BAC Information

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BAC

Clone NameB6Ng01-156A24
Chromosome18 (Build37)
Map Location 21,323,904 - 21,450,061
singlet/doubletdoublet
Overlap geneGm944
Upstream geneDsg1c, Dsg1a, Dsg1b, Dsg4, LOC435558, Dsg3, Tpi-rs10, Dsg2, Ttr, LOC100040823, B4galt6, D030074E01Rik, Rnf125, Rnf138, Mep1b, EG622978
Downstream geneLOC665722, LOC225264, Klhl14, 4921528I01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156A24.bB6Ng01-156A24.g
ACCDH950669DH950670
length9801,121
definitionDH950669|Mus musculus domesticus DNA, BAC clone: B6Ng01-156A24, 5' end.DH950670|Mus musculus domesticus DNA, BAC clone: B6Ng01-156A24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,323,904 - 21,324,887)(21,448,944 - 21,450,061)
sequence
gaattcataactacaaacatttcaatagtgtatcccattgccatatttat
ggcattctttttttttattattttcacatgtgtgtatgcatgcgtacata
caagcatacacatgtgcatgtggaggcctgatgttaagaatcatctgtga
ccattcttctacctgttcactgagccaggaactctcagtcaaacccagat
ctcactgatctggctagtcttgttaatcagcttgcaggtgatcaactgcc
tctgccttctgaggttggaatcacaggtgggctgccatgctcacctaaca
tttatggaggttctagggatctgaactctggcgagggcttcagccactga
gccatctctcaggacctacgccagttttgagttagaaaataaatttttct
atgtaggtaaaatatttctctgtaggtttaaatttatagaaaaacaactc
tccacctcaaaaatctgtctcttggaaaacagctttgtctaagcctagat
agtgctaatttcattttgtctttctccaggggacgtaagaaccaaacatg
gcgggttcttttgtttgtttgtttgttattttttttttttttaccccttc
agtctacagagaacaccaatatcgcagttcattcacttggagtgtattta
ctaagcacacaaagttctggatatgtcattatacaaatttcctaagctct
ctctctctctagcaatggttctttgaaggaaggaaagtgaatattttagt
gattaatgcaaaccggatgtgatggtttaaaactctgtaagcaataaata
actcttgttataaaatattgatgcttaccagtatggaactcaatccaagt
ccacttgtctctggattctctaagctcacatttcatatgctaacctgtgg
ccgcagacttgtaagcagcgtctcattacacacagatattatttatttgt
gctttgtaagcgtgtgtgtgtgtgtgtgtg
gaattcttagcactgtggagatatttgttattctggataatactgaccgt
gcactgcaagtaaaagcacagaggagactgcggttgttgagtggtgttta
tgtatatatccctggaaagagttaggctacactgtgtctggtggcttgtt
ttcttaactcactcgagaaaaatttcttcagtcagacactctttcttcca
tattaagatgatagttttgttaataccatactttaagatgttagaattga
aactctcctgtctttctctcagggaactagatttacatactcaaagtaga
caagggccaccccctttctgttgcaccattgtttctaatcatatttactc
ccatgtaggcagtcacaaacactggttattggaggcttctgtctgttcat
aaaaaggttaaagaactccctgagaaaaccctgcagaacatgtgagcatc
tacctctgctggttctgtttcttctccaagtggtgctcactttgaagtcc
cattctctggtagtcacagtagaccagcaagagtggtcagaaccactctc
ctgtcatttctgtccttagtctatgcctctgggtctttcatcccagattg
tttcaggtgttcacatttaggatatctcagcattcagttttaccttgggg
ccactgtccacaaagtcagtcgagctccaggcccaagttaaataacaact
taattagttgagagagaggcacatgtgtgtatgagttagaagtgctctag
aaggttcagattacctacttaaaaataacaagtcacaggaagctttatta
agaggctcccttattgttttctatttattttggtcccattatttggccag
ttaaaatggagtcagagtagataggttcagcagaaatttcagaacctcat
ttatcacggttattgtattatcagccaaggttaatttcagtcatgcatta
caagttgaaacacacacacacatacacagcgacacagtgacttacacaca
tagacaaggccttattctatgttgtcacgactgaaatccaggtccagtgt
tgaagacttacgctgttgggtgcttttctgttctggtttcctcaagctgt
gggttctgtccaagggtgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_21323904_21324887
seq2: B6Ng01-156A24.b_51_1030

seq1  GAATTCATAACTACAAACATTTCAATAGTGTATCCCATTGCCATATTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAACTACAAACATTTCAATAGTGTATCCCATTGCCATATTTAT  50

seq1  GGCATTCTTTTTTTTTATTATTTTCACATGTGTGTATGCATGCGTACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTCTTTTTTTTTATTATTTTCACATGTGTGTATGCATGCGTACATA  100

seq1  CAAGCATACACATGTGCATGTGGAGGCCTGATGTTAAGAATCATCTGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATACACATGTGCATGTGGAGGCCTGATGTTAAGAATCATCTGTGA  150

seq1  CCATTCTTCTACCTGTTCACTGAGCCAGGAACTCTCAGTCAAACCCAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTTCTACCTGTTCACTGAGCCAGGAACTCTCAGTCAAACCCAGAT  200

seq1  CTCACTGATCTGGCTAGTCTTGTTAATCAGCTTGCAGGTGATCAACTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGATCTGGCTAGTCTTGTTAATCAGCTTGCAGGTGATCAACTGCC  250

seq1  TCTGCCTTCTGAGGTTGGAATCACAGGTGGGCTGCCATGCTCACCTAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTTCTGAGGTTGGAATCACAGGTGGGCTGCCATGCTCACCTAACA  300

seq1  TTTATGGAGGTTCTAGGGATCTGAACTCTGGCGAGGGCTTCAGCCACTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGAGGTTCTAGGGATCTGAACTCTGGCGAGGGCTTCAGCCACTGA  350

seq1  GCCATCTCTCAGGACCTACGCCAGTTTTGAGTTAGAAAATAAATTTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTCTCAGGACCTACGCCAGTTTTGAGTTAGAAAATAAATTTTTCT  400

seq1  ATGTAGGTAAAATATTTCTCTGTAGGTTTAAATTTATAGAAAAACAACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGGTAAAATATTTCTCTGTAGGTTTAAATTTATAGAAAAACAACTC  450

seq1  TCCACCTCAAAAATCTGTCTCTTGGAAAACAGCTTTGTCTAAGCCTAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCAAAAATCTGTCTCTTGGAAAACAGCTTTGTCTAAGCCTAGAT  500

seq1  AGTGCTAATTTCATTTTGTCTTTCTCCAGGGGACGTAAGAACCAAACATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTAATTTCATTTTGTCTTTCTCCAGGGGACGTAAGAACCAAACATG  550

seq1  GCGGGTTCTTTTGTTTGTTTGTTTGTTATTTTTTTTTTTTTTACCCCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGTTCTTTTGTTTGTTTGTTTGTTATTTTTTTTTTTTTTACCCCTTC  600

seq1  AGTCTACAGAGAACACCAATATCGCAGTTCATTCACTTGGAGTGTATTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTACAGAGAACACCAATATCGCAGTTCATTCACTTGGAGTGTATTTA  650

seq1  CTAAGCACACAAAGTTCTGGATATGTCATTATACAAATTTCCTAAGCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCACACAAAGTTCTGGATATGTCATTATACAAATTTCCTAAGCTCT  700

seq1  CTCTCTCTCTAGCAATGGTTCTTTGAAGGAAGGAAAGTGAATATTTTAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTAGCAATGGTTCTTTGAAGGAAGGAAAGTGAATATTTTAGT  750

seq1  GATTAATGCAAACCGGATGTGATGGTTTAAAACTCTGTAAGCAATAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAATGCAAACCGGATGTGATGGTTTAAAACTCTGTAAGCAATAAATA  800

seq1  ACTCTTGTTATAAAATATTGATGCTTACCAGTATGGAACTCAATCCAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGTTATAAAATATTGATGCTTACCAGTATGGAACTCAATCCAAGT  850

seq1  CCACTTGTCTCTGGATTCTCTAAGCTCACATTTCATATGCTAACCTGTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGTCTCTGGATTCTCTAAGCTCACATTTCATATGCTAACCTGTGG  900

seq1  CCGCAGACTTGTAAGCAGCGTCTCAATTACACACAGAATATTATTTTATT  950
      |||||||||||||||||||||||| ||||||||||| |||||| ||||||
seq2  CCGCAGACTTGTAAGCAGCGTCTC-ATTACACACAG-ATATTA-TTTATT  947

seq1  TGTTGCTTTGTAAGCGTGTGTGTGTGTGTGTGTG  984
      || |||||||||||||||||||||||||||||||
seq2  TG-TGCTTTGTAAGCGTGTGTGTGTGTGTGTGTG  980

seq1: chr18_21448944_21450061
seq2: B6Ng01-156A24.g_60_1180 (reverse)

seq1  AGTCACC--TTGACAGAACCAACAGCTTGAAGGAAACAGAACAGAAAGGC  48
      |||||||  | ||||||||| ||||||||| | || ||||||||||| ||
seq2  AGTCACCCTTGGACAGAACCCACAGCTTGAGGAAACCAGAACAGAAAAGC  50

seq1  A-CCAACAGCGTAAGTCTTCAACACTGGACCTGGATTTCAGTCGTGACAA  97
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAACAGCGTAAGTCTTCAACACTGGACCTGGATTTCAGTCGTGACAA  100

seq1  CATAGAATAAGG-CTTGTCTATGTTGTGTAAGTCACTGTTGTCGCTGTGT  146
      |||||||||||| |||||||||| |||||||||||||| |||||||||||
seq2  CATAGAATAAGGCCTTGTCTATG-TGTGTAAGTCACTG-TGTCGCTGTGT  148

seq1  ATGTGTGTGTGTGTTTCAACTTGTAATGCATGACTGAAATTAACCTTGGC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTGTGTGTTTCAACTTGTAATGCATGACTGAAATTAACCTTGGC  198

seq1  TGAT-ATACAATAACCGTGATAAATGAGGTTCTGAAATTTCTGCTGAACC  245
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATACAATAACCGTGATAAATGAGGTTCTGAAATTTCTGCTGAACC  248

seq1  TATCTACTCTGACTCCATTTTAACTGGCCAAATAATGGGACCAAAATAAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTACTCTGACTCCATTTTAACTGGCCAAATAATGGGACCAAAATAAA  298

seq1  TAGAAAACAATAAGGGAGCCTCTTAATAAAGCTTCCTGTGACTTGTTATT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAACAATAAGGGAGCCTCTTAATAAAGCTTCCTGTGACTTGTTATT  348

seq1  TTTAAGTAGGTAATCTGAACCTTCTAGAGCACTTCTAACTCATACACACA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTAGGTAATCTGAACCTTCTAGAGCACTTCTAACTCATACACACA  398

seq1  TGTGCCTCTCTCTCAACTAATTAAGTTGTTATTTAACTTGGGCCTGGAGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTCTCTCTCAACTAATTAAGTTGTTATTTAACTTGGGCCTGGAGC  448

seq1  TCGACTGACTTTGTGGACAGTGGCCCCAAGGTAAAACTGAATGCTGAGAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACTGACTTTGTGGACAGTGGCCCCAAGGTAAAACTGAATGCTGAGAT  498

seq1  ATCCTAAATGTGAACACCTGAAACAATCTGGGATGAAAGACCCAGAGGCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAAATGTGAACACCTGAAACAATCTGGGATGAAAGACCCAGAGGCA  548

seq1  TAGACTAAGGACAGAAATGACAGGAGAGTGGTTCTGACCACTCTTGCTGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTAAGGACAGAAATGACAGGAGAGTGGTTCTGACCACTCTTGCTGG  598

seq1  TCTACTGTGACTACCAGAGAATGGGACTTCAAAGTGAGCACCACTTGGAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGTGACTACCAGAGAATGGGACTTCAAAGTGAGCACCACTTGGAG  648

seq1  AAGAAACAGAACCAGCAGAGGTAGATGCTCACATGTTCTGCAGGGTTTTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACAGAACCAGCAGAGGTAGATGCTCACATGTTCTGCAGGGTTTTC  698

seq1  TCAGGGAGTTCTTTAACCTTTTTATGAACAGACAGAAGCCTCCAATAACC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGAGTTCTTTAACCTTTTTATGAACAGACAGAAGCCTCCAATAACC  748

seq1  AGTGTTTGTGACTGCCTACATGGGAGTAAATATGATTAGAAACAATGGTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTGTGACTGCCTACATGGGAGTAAATATGATTAGAAACAATGGTG  798

seq1  CAACAGAAAGGGGGTGGCCCTTGTCTACTTTGAGTATGTAAATCTAGTTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAAAGGGGGTGGCCCTTGTCTACTTTGAGTATGTAAATCTAGTTC  848

seq1  CCTGAGAGAAAGACAGGAGAGTTTCAATTCTAACATCTTAAAGTATGGTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAGAAAGACAGGAGAGTTTCAATTCTAACATCTTAAAGTATGGTA  898

seq1  TTAACAAAACTATCATCTTAATATGGAAGAAAGAGTGTCTGACTGAAGAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAAACTATCATCTTAATATGGAAGAAAGAGTGTCTGACTGAAGAA  948

seq1  ATTTTTCTCGAGTGAGTTAAGAAAACAAGCCACCAGACACAGTGTAGCCT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTCGAGTGAGTTAAGAAAACAAGCCACCAGACACAGTGTAGCCT  998

seq1  AACTCTTTCCAGGGATATATACATAAACACCACTCAACAACCGCAGTCTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTTCCAGGGATATATACATAAACACCACTCAACAACCGCAGTCTC  1048

seq1  CTCTGTGCTTTTACTTGCAGTGCACGGTCAGTATTATCCAGAATAACAAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGCTTTTACTTGCAGTGCACGGTCAGTATTATCCAGAATAACAAA  1098

seq1  TATCTCCACAGTGCTAAGAATTC  1118
      |||||||||||||||||||||||
seq2  TATCTCCACAGTGCTAAGAATTC  1121