BAC Information

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BAC

Clone NameB6Ng01-156B04
Chromosome18 (Build37)11 (Build37)
Map Location 56,806,015 - 56,806,16468,611,734 - 68,612,061
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC667401, LOC667409, LOC629043, LOC100043099, LOC629057, LOC100043104, LOC676543, LOC667432, Gramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171
Downstream geneLmnb1, March3, C330018D20Rik, Megf10, LOC672445, Prrc1, 1700011I03Rik, 4930511M06Rik, 2210409D07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156B04.bB6Ng01-156B04.g
ACCDH950675DH950676
length926328
definitionDH950675|Mus musculus domesticus DNA, BAC clone: B6Ng01-156B04, 5' end.DH950676|Mus musculus domesticus DNA, BAC clone: B6Ng01-156B04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(56,806,015 - 56,806,164)(68,611,734 - 68,612,061)
sequence
gaattccaggacagccagggttacacagagaaaccctgtctcagaaaaac
caaaaccaaacaaaaacccaatgctttaatcaaagatatgtctcccaagc
agtgtaaactccacagtcccaggaactctgtcctaacagtgtcagtaagt
ctatgtggaataaataagtagatataaaagttgatttatttttcccaggt
accttctctgtgtagccctggctgtcctatagttgctctgtagataaaag
gtgtgtgccgccaccacccagctcgcatagatttttgttgttttgttttt
ttaagtatttgtccttggggctggagagattgttgcaggaaatatctttt
aaaaaaaaaaaaaaaaaaaaaaaaaaagaacgtcacattcctgtgcttgt
gcctttggggtctggccagctatgcactggcaagcaatggccaacctgtt
tttaatctcatggagactcttgacccagaactccacaatctctccaccca
gcttgttaggttctcactggtgggtcactaccacaccaagcccatgcttc
aaatcccctacagcctttgtggtgcacatctggcaaacccactccttgct
gccgtacctttctctcttgaacccagatgagctagctgagtgaaggaaaa
cacaaaacaaacttagttcagaaacaatggtaactcagtctctgggcaca
acaactaaaacctaatcttgtaagctttattaaaatgtgattcctccagc
ggtgaatccttgaggatccaccatggtactgggaaactctagcaggtaca
tcttacttatgtaagatgccttgtgctgtccccagtcgaaaaatggttat
aagtactggctgctcttgcagaggatctgggttcaattcccagtaattcc
cagcatccacatggcagcttacactg
ctccctcccctctcctagttcaaagccaacctggagaagaacaaacaggg
cctggagacagacaacaaggagctggcgtgtgaggtgaaggtgctgcagc
aggtgaaggcggagtcagagcacaagaggaagaagctggatgcccaggtc
caggagctccatgccaaggtgtcagagggtgacaggctcagggtagagct
ggccgagaaagcaaacaagctacaggtatgggctctggcggcgtgttctg
ttgcatacctggaaagtgttgtcccgattaaatatggcagctcgagggta
tgtgtgtgtatgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_56806015_56806164
seq2: B6Ng01-156B04.b_49_346 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  AAAAAACAAAACAACAAAAATCTATGCGAGCTGGGTGGTGGCGGCACACA  50

seq1  --------------------------------------------------  0
                                                        
seq2  CCTTTTATCTACAGAGCAACTATAGGACAGCCAGGGCTACACAGAGAAGG  100

seq1  -------AAAAAACAAAACAAC--------------AAAAAACCCA----  25
              ||||| ||| ||||              |   |  |||    
seq2  TACCTGGGAAAAATAAATCAACTTTTATATCTACTTATTTATTCCACATA  150

seq1  -AGTTAAT----CT-TTAG---------CTTGGGACATGATTAGAGAT--  58
       | ||| |    || ||||         | |||||| ||  | ||| |  
seq2  GACTTACTGACACTGTTAGGACAGAGTTCCTGGGAC-TG--TGGAGTTTA  197

seq1  AAATGCCATAGGGA-ACA-ATATAGAAATAAATCA---ACTTTTTG----  99
       | |||  | |||| ||| || |   | |||| ||     ||||||    
seq2  CACTGC--TTGGGAGACATATCTTTGATTAAAGCATTGGGTTTTTGTTTG  245

seq1  --TTTTGTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTG  147
        ||| |||||| |||||||||||||||||||||| ||||||||||||||
seq2  GTTTTGGTTTTTCTGAGACAGGGTTTCTCTGTGTAACCCTGGCTGTCCTG  295

seq1  GAA  150
      |||
seq2  GAA  298

seq1: chr11_68611734_68612061
seq2: B6Ng01-156B04.g_74_401

seq1  CTCCCTCCCCTCTCCTAGTTCAAAGCCAACCTGGAGAAGAACAAACAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCCCCTCTCCTAGTTCAAAGCCAACCTGGAGAAGAACAAACAGGG  50

seq1  CCTGGAGACAGACAACAAGGAGCTGGCGTGTGAGGTGAAGGTGCTGCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGACAGACAACAAGGAGCTGGCGTGTGAGGTGAAGGTGCTGCAGC  100

seq1  AGGTGAAGGCGGAGTCAGAGCACAAGAGGAAGAAGCTGGATGCCCAGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAAGGCGGAGTCAGAGCACAAGAGGAAGAAGCTGGATGCCCAGGTC  150

seq1  CAGGAGCTCCATGCCAAGGTGTCAGAGGGTGACAGGCTCAGGGTAGAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCTCCATGCCAAGGTGTCAGAGGGTGACAGGCTCAGGGTAGAGCT  200

seq1  GGCCGAGAAAGCAAACAAGCTACAGGTATGGGCTCTGGCGGCGTGTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGAGAAAGCAAACAAGCTACAGGTATGGGCTCTGGCGGCGTGTTCTG  250

seq1  TTGCATACCTGGAAAGTGTTGTCCCGATTAAATATGGCAGCTCGAGGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATACCTGGAAAGTGTTGTCCCGATTAAATATGGCAGCTCGAGGGTA  300

seq1  TGTGTGTGTATGTGTGTGTGTGTGTGTG  328
      ||||||||||||||||||||||||||||
seq2  TGTGTGTGTATGTGTGTGTGTGTGTGTG  328