BAC Information

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BAC

Clone NameB6Ng01-156K02
Chromosome18 (Build37)
Map Location 3,243,261 - 3,336,229
singlet/doubletdoublet
Overlap geneCrem
Upstream geneLOC664794
Downstream geneEG621440, Cul2, EG621501, Bambi, LOC100039273, LOC435549, EG664867, LOC621666, Lyzl1, LOC383374, LOC664909, Map3k8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156K02.bB6Ng01-156K02.g
ACCDH951083DH951084
length1,137310
definitionDH951083|Mus musculus domesticus DNA, BAC clone: B6Ng01-156K02, 5' end.DH951084|Mus musculus domesticus DNA, BAC clone: B6Ng01-156K02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,243,261 - 3,244,419)(3,335,920 - 3,336,229)
sequence
gaattcttcatgttgtgtgcaaagctctaggtggtttgtcacacctgata
tacaggtatgctctggatagtggctcaccacctcttacagtaccatacac
agtggcacttcagctacatctgtaacagtggatcccaacaaccttcacca
cagttagaggatatactacctgactacactgttagctgattggatatttg
gttgtgtaaattgctagattaacacaaaaacatgaatgtgttagttatat
agtaccacataataaggtcggtccagacttagtggtgtcaaatggcgttg
ataacttcatagtttctgtggaccaggaatccagctctggttcaataggg
tcctatgactcagggcctgtcacaaagcaaagagcctgtggtctcctcag
tgcaggaagatctgcttccagtcaaagcagtggatgctttctcaatactc
tggtagctgcctgtggatcacatatagtatccaggttggtggtcagaaat
gcaaattcttcctaactagggcacctgggaaacattccttctgtccattc
actaagttatctccccttttatgctcaggagagaactgagaggagcctct
gtaggccccagcatctgcatagctttctctcctcagagctctgtgttgtg
ggttcttgtgtaccttgtcatcaccagactcaactctgtttccccagaca
aggagactagtggctcagctggcttccatgcacacaagcaggaatcattc
tagacactatgtatgacaatcccagaggccttctcaccagcttcccttcc
acggatcccaaacttgtgcttacaatcacgttcacacactatccatcatg
gactcagacagaatcccctgcatctttcttatcatcctgttgtcagacct
cttcagctacccaactagcataccagttgtatagtattcgtgatcttgat
ttggctgagacaaaacaccttttcatgtgattattggaatatggtttcaa
tatataatcatatgtttttgataactcctgtgtgtgaggcttttttctta
acttaaattttatttatgtggtggatattgtgtctataataaggtgtaca
ctgtgcatctaggtccaaaaaactaggaattgcatta

tggccaaatcttaatgagaatttaatttctcatgttattaagtaagtatt
gggttataaaattgagccaggtactctactgggatgcttgcaaatgccct
gtcccatttagatagacttttaaaaatacttaaaaaatatttaattttga
aaggtgtgtgtgtgagagagagagagagagggagggagagagagagagag
agagagagagagagagagagagagaatatgaatgaatcctatgatatttg
ggtgctcttgaatctggcgttacagtggctgtgctctgtctggtgtgaga
gctgggaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_3243261_3244419
seq2: B6Ng01-156K02.b_46_1182

seq1  GAATTCTTCATGTTGTGTGCAAAGCTCTAGGTGGTTTGTCACACCTGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATGTTGTGTGCAAAGCTCTAGGTGGTTTGTCACACCTGATA  50

seq1  TACAGGTATGCTCTGGATAGTGGCTCACCACCTCTTACAGTACCATACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGTATGCTCTGGATAGTGGCTCACCACCTCTTACAGTACCATACAC  100

seq1  AGTGGCACTTCAGCTACATCTGTAACAGTGGATCCCAACAACCTTCACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCACTTCAGCTACATCTGTAACAGTGGATCCCAACAACCTTCACCA  150

seq1  CAGTTAGAGGATATACTACCTGACTACACTGTTAGCTGATTGGATATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAGAGGATATACTACCTGACTACACTGTTAGCTGATTGGATATTTG  200

seq1  GTTGTGTAAATTGCTAGATTAACACAAAAACATGAATGTGTTAGTTATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTAAATTGCTAGATTAACACAAAAACATGAATGTGTTAGTTATAT  250

seq1  AGTACCACATAATAAGGTCGGTCCAGACTTAGTGGTGTCAAATGGCGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCACATAATAAGGTCGGTCCAGACTTAGTGGTGTCAAATGGCGTTG  300

seq1  ATAACTTCATAGTTTCTGTGGACCAGGAATCCAGCTCTGGTTCAATAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTCATAGTTTCTGTGGACCAGGAATCCAGCTCTGGTTCAATAGGG  350

seq1  TCCTATGACTCAGGGCCTGTCACAAAGCAAAGAGCCTGTGGTCTCCTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGACTCAGGGCCTGTCACAAAGCAAAGAGCCTGTGGTCTCCTCAG  400

seq1  TGCAGGAAGATCTGCTTCCAGTCAAAGCAGTGGATGCTTTCTCAATACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGAAGATCTGCTTCCAGTCAAAGCAGTGGATGCTTTCTCAATACTC  450

seq1  TGGTAGCTGCCTGTGGATCACATATAGTATCCAGGTTGGTGGTCAGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGCTGCCTGTGGATCACATATAGTATCCAGGTTGGTGGTCAGAAAT  500

seq1  GCAAATTCTTCCTAACTAGGGCACCTGGGAAACATTCCTTCTGTCCATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTCTTCCTAACTAGGGCACCTGGGAAACATTCCTTCTGTCCATTC  550

seq1  ACTAAGTTATCTCCCCTTTTATGCTCAGGAGAGAACTGAGAGGAGCCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTTATCTCCCCTTTTATGCTCAGGAGAGAACTGAGAGGAGCCTCT  600

seq1  GTAGGCCCCAGCATCTGCATAGCTTTCTCTCCTCAGAGCTCTGTGTTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCCCCAGCATCTGCATAGCTTTCTCTCCTCAGAGCTCTGTGTTGTG  650

seq1  GGTTCTTGTGTACCTTGTCATCACCAGACTCAACTCTGTTTCCCCAGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTGTGTACCTTGTCATCACCAGACTCAACTCTGTTTCCCCAGACA  700

seq1  AGGAGACTAGTGGCTCAGCTGGCTTCCATGCACACAAGCAGGAATCATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACTAGTGGCTCAGCTGGCTTCCATGCACACAAGCAGGAATCATTC  750

seq1  TAGACACTATGTATGACAATCCCAGAGGCCTTCTCACCAGCTTCCCTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACTATGTATGACAATCCCAGAGGCCTTCTCACCAGCTTCCCTTCC  800

seq1  ACGGATCCCAAACTTGTGCTTACAATCAGGTTCACACACTATCCATCATG  850
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACGGATCCCAAACTTGTGCTTACAATCACGTTCACACACTATCCATCATG  850

seq1  GACTCAGACAGAATCCCCTGCATCTTCCTTATCATCCTGTTGCCAGACCT  900
      |||||||||||||||||||||||||| ||||||||||||||| |||||||
seq2  GACTCAGACAGAATCCCCTGCATCTTTCTTATCATCCTGTTGTCAGACCT  900

seq1  CTTCAGCTACCCAACTAGCATACCAGTTGTATAGTATTTCGTGATCTTGA  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTTCAGCTACCCAACTAGCATACCAGTTGTATAGTA-TTCGTGATCTTGA  949

seq1  TTTGGCTGAGACAAAACACCTTTTCATGTGATTATTGGGAATATTGGTTT  1000
      |||||||||||||||||||||||||||||||||||| |||||| ||||||
seq2  TTTGGCTGAGACAAAACACCTTTTCATGTGATTATT-GGAATA-TGGTTT  997

seq1  CCAATATATAATCATATGTTTTTTGATTAACTCCCTGTTGTGTGAGGGTT  1050
       ||||||||||||||||| ||||||| ||||| |||| ||||||| || |
seq2  -CAATATATAATCATATG-TTTTTGA-TAACT-CCTG-TGTGTGA-GGCT  1041

seq1  TTTTTCTTTAAACTTTAAATTTTTATTTTATGTGTGTGGATATTGTGTCT  1100
      ||||||||  ||| |||||||||   |||||||| |||||||||||||||
seq2  TTTTTCTT--AAC-TTAAATTTT--ATTTATGTG-GTGGATATTGTGTCT  1085

seq1  ATATATAAGTGTGTACCACATGTGCATCTAGTGTCCACAAAAACTAGGAG  1150
      ||| ||||| ||||| ||| ||||||||||| ||||| ||||||||||| 
seq2  ATA-ATAAG-GTGTA-CAC-TGTGCATCTAG-GTCCA-AAAAACTAGGA-  1128

seq1  ATGGCATTA  1159
      || ||||||
seq2  ATTGCATTA  1137


seq1: chr18_3335920_3336229
seq2: B6Ng01-156K02.g_71_380 (reverse)

seq1  AGTTCCCAGCTCTCACACCAGGCAGTGCACAGCCACTGTAACGCCAGCTT  50
      ||||||||||||||||||||| ||| ||||||||||||||||||||| ||
seq2  AGTTCCCAGCTCTCACACCAGACAGAGCACAGCCACTGTAACGCCAGATT  50

seq1  CAAGAGCACCCAAATATCATAGGATTCATTCATATTCTCTCTCTCTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCACCCAAATATCATAGGATTCATTCATATTCTCTCTCTCTCTCT  100

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTCTCTCTCTCTCTCTCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTCTCTCTCTCTCTCTCACA  150

seq1  CACACACCTTTCAAAATTAAATATTTTTTAAGTATTTTTAAAAGTCTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACCTTTCAAAATTAAATATTTTTTAAGTATTTTTAAAAGTCTATC  200

seq1  TAAATGGGACAGGGCATTTGCAAGCATCCCAGTAGAGTACCTGGCTCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGGACAGGGCATTTGCAAGCATCCCAGTAGAGTACCTGGCTCAAT  250

seq1  TTTATAACCCAATACTTACTTAATAACATGAGAAATTAAATTCTCATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAACCCAATACTTACTTAATAACATGAGAAATTAAATTCTCATTAA  300

seq1  GATTTGGCCA  310
      ||||||||||
seq2  GATTTGGCCA  310


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