BAC Information

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BAC

Clone NameB6Ng01-156M04
Chromosome18 (Build37)
Map Location 43,571,893 - 43,719,407
singlet/doubletdoublet
Overlap geneLOC100042074, LOC100042807, Jakmip2
Upstream geneLOC100042767, LOC100042027, Tcerg1, Gpr151, LOC100042037, Ppp2r2b, LOC100042046, LOC100042051, EG666594, Stk32a, Dpysl3
Downstream geneSpink3, Scgb3a2, Gm94, Spink5, EG433178, LOC666969, EG433180, Spink12, LOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot, Dcp2, Mcc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156M04.bB6Ng01-156M04.g
ACCDH951180DH951181
length4921,065
definitionDH951180|Mus musculus domesticus DNA, BAC clone: B6Ng01-156M04, 5' end.DH951181|Mus musculus domesticus DNA, BAC clone: B6Ng01-156M04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,571,893 - 43,572,390)(43,718,330 - 43,719,407)
sequence
agaagttgcccacaaaactacaagtagaactatcacgtaacccagatcca
ccactctgggtattcctcccttctcctcctcctccctctacccagacttc
atgtgagcatactcagagacactacacatcagtgttcatggcatcattat
tcacattagctaaatgacggaaccgacttgtatgttcaccaactaagcaa
tggataaagaatggttttatattcaccatggagtttttcagccatgaata
taaatgaaattgtggtatttgtaggaaaatggatgcaactgaagatgatc
atattatctgaactaaaagtcagtgtcagaaagacaagtattgcgactct
cctctcatttgttgattctaggttctctagatgcatggaatcctgtgtta
aaaatgacttgaaattaggagtgaagagaaggggaacaaagaggaactga
tggaactgaggagggagggaggaatgtgatgatagatgggtg
gaattccatcttatggagtctcacgccactctctacaacaattcccagtt
ttataggtaagagctgtttgaagcaattatgtattttagaattactacaa
aaatacccatcagatcttatcaatatgcaaaacattgtatgatgggcatg
agttgattaagttgtacccagaaatgtgtatagggtctaaattaacagca
actggtatttttagagctaagtgtccgtctccctcataaacacccttaag
tctattcggagcacactgtatctgacccacgtgggacatgtgagtgtctc
aaattcactgtctcgaggagttctagccttcatgtcagagaaaggttttt
tcttagcatctgtctctgtgcttccgcaaatcagctagaaaatggcgaca
aggaaagtcaatcctaccttagccatatctccgttgggattattggcatg
gtctacagccaaccttgttcactgagtggatgatttgcaaccacatccat
ggctgctctgccgaggtgttcctttgctgtgctcacctaactccagggtt
tattttatcagatagagaagcaggaagcagagaatcaccggctacagcag
gaacttcaggatgccagggaccagaatgagctgctggagtttcgcaacct
agaactggaagtaaggaactgctgatgttaatggcggcatggtcttgact
tgtgcaggcgatgaattaagcatttcagagttacgctcttttctagaccc
cagaggtagttcaagataatgtaactgtgacagtcaagactacatacctt
agaaacgttgcctacgccatgtatctgtctagtaatgataaattttaaag
aagcttcagactgtcctcatggggactgtgctttcccaacaactagctga
tggattttaggaaatgtctacattattctggcaaacttgacgtccttgtt
ttgggggatttgttgttttagtaaacatatcaaacacgtatcattggagt
cttatgaaatctgattgagtctggtgatgacaaactatttgattttcttt
gattttgccactgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_43571893_43572390
seq2: B6Ng01-156M04.b_44_541

seq1  GAATTCAGAAGTTGCCCACAAAACTACAAGTAGAACTATCACGTAACCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGTTGCCCACAAAACTACAAGTAGAACTATCACGTAACCCA  50

seq1  GATCCACCACTCTGGGTATTCCTCCCTTCTCCTCCTCCTCCCTCTACCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCACCACTCTGGGTATTCCTCCCTTCTCCTCCTCCTCCCTCTACCCA  100

seq1  GACTTCATGTGAGCATACTCAGAGACACTACACATCAGTGTTCATGGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCATGTGAGCATACTCAGAGACACTACACATCAGTGTTCATGGCAT  150

seq1  CATTATTCACATTAGCTAAATGACGGAACCGACTTGTATGTTCACCAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTCACATTAGCTAAATGACGGAACCGACTTGTATGTTCACCAACT  200

seq1  AAGCAATGGATAAAGAATGGTTTTATATTCACCATGGAGTTTTTCAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATGGATAAAGAATGGTTTTATATTCACCATGGAGTTTTTCAGCCA  250

seq1  TGAATATAAATGAAATTGTGGTATTTGTAGGAAAATGGATGCAACTGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATAAATGAAATTGTGGTATTTGTAGGAAAATGGATGCAACTGAAG  300

seq1  ATGATCATATTATCTGAACTAAAAGTCAGTGTCAGAAAGACAAGTATTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCATATTATCTGAACTAAAAGTCAGTGTCAGAAAGACAAGTATTGC  350

seq1  GACTCTCCTCTCATTTGTTGATTCTAGGTTCTCTAGATGCATGGAATCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTCCTCTCATTTGTTGATTCTAGGTTCTCTAGATGCATGGAATCCT  400

seq1  GTGTTAAAAATGACTTGAAATTAGGAGTGAAGAGAAGGGGAACAAAGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAAAAATGACTTGAAATTAGGAGTGAAGAGAAGGGGAACAAAGAGG  450

seq1  AACTGATGGAACTGAGGAGGGAGGGAGGAATGTGATGATAGATGGGTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATGGAACTGAGGAGGGAGGGAGGAATGTGATGATAGATGGGTG  498

seq1: chr18_43718330_43719407
seq2: B6Ng01-156M04.g_68_1132 (reverse)

seq1  ATCAGTGGCAAAAATCATAGAAAATTCAAATAGGTGTTTGTCATCACCCA  50
      ||||||||| ||||||| |||||| |||||||   ||||||||||| |||
seq2  ATCAGTGGC-AAAATCAAAGAAAA-TCAAATA---GTTTGTCATCA-CCA  44

seq1  GAACTTCAATCAGATTTCAT-AGACTCCAATGAATACGTGGTTTGATATG  99
      ||   ||||||||||||||| ||||||||||| |||||| ||||||||||
seq2  GA--CTCAATCAGATTTCATAAGACTCCAATG-ATACGT-GTTTGATATG  90

seq1  TTTTACTTAAAAACAACAAATCCCCCAAAACAAGGACGTCAAGTTTGGCC  149
       ||||||  ||||||||||||||||||||||||||||||||||||| |||
seq2  -TTTACT--AAAACAACAAATCCCCCAAAACAAGGACGTCAAGTTT-GCC  136

seq1  AGAATAATGTAGACATTTCCTAAAATCCATCAGCTAGTTGTTGGGAAAGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAATGTAGACATTTCCTAAAATCCATCAGCTAGTTGTTGGGAAAGC  186

seq1  ACAGTCCCCATGAGGACAGTCTGAAGCTTCTTTAAAATTTATCATTACTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCCCCATGAGGACAGTCTGAAGCTTCTTTAAAATTTATCATTACTA  236

seq1  GACAGATACATGGCGTAGGCAACGTTTCTAAGGTATGTAGTCTTGACTGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATACATGGCGTAGGCAACGTTTCTAAGGTATGTAGTCTTGACTGT  286

seq1  CACAGTTACATTATCTTGAACTACCTCTGGGGTCTAGAAAAGAGCGTAAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTACATTATCTTGAACTACCTCTGGGGTCTAGAAAAGAGCGTAAC  336

seq1  TCTGAAATGCTTAATTCATCGCCTGCACAAGTCAAGACCATGCCGCCATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAATGCTTAATTCATCGCCTGCACAAGTCAAGACCATGCCGCCATT  386

seq1  AACATCAGCAGTTCCTTACTTCCAGTTCTAGGTTGCGAAACTCCAGCAGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCAGCAGTTCCTTACTTCCAGTTCTAGGTTGCGAAACTCCAGCAGC  436

seq1  TCATTCTGGTCCCTGGCATCCTGAAGTTCCTGCTGTAGCCGGTGATTCTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTGGTCCCTGGCATCCTGAAGTTCCTGCTGTAGCCGGTGATTCTC  486

seq1  TGCTTCCTGCTTCTCTATCTGATAAAATAAACCCTGGAGTTAGGTGAGCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCTGCTTCTCTATCTGATAAAATAAACCCTGGAGTTAGGTGAGCA  536

seq1  CAGCAAAGGAACACCTCGGCAGAGCAGCCATGGATGTGGTTGCAAATCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAGGAACACCTCGGCAGAGCAGCCATGGATGTGGTTGCAAATCAT  586

seq1  CCACTCAGTGAACAAGGTTGGCTGTAGACCATGCCAATAATCCCAACGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCAGTGAACAAGGTTGGCTGTAGACCATGCCAATAATCCCAACGGA  636

seq1  GATATGGCTAAGGTAGGATTGACTTTCCTTGTCGCCATTTTCTAGCTGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGGCTAAGGTAGGATTGACTTTCCTTGTCGCCATTTTCTAGCTGAT  686

seq1  TTGCGGAAGCACAGAGACAGATGCTAAGAAAAAACCTTTCTCTGACATGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGGAAGCACAGAGACAGATGCTAAGAAAAAACCTTTCTCTGACATGA  736

seq1  AGGCTAGAACTCCTCGAGACAGTGAATTTGAGACACTCACATGTCCCACG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGAACTCCTCGAGACAGTGAATTTGAGACACTCACATGTCCCACG  786

seq1  TGGGTCAGATACAGTGTGCTCCGAATAGACTTAAGGGTGTTTATGAGGGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCAGATACAGTGTGCTCCGAATAGACTTAAGGGTGTTTATGAGGGA  836

seq1  GACGGACACTTAGCTCTAAAAATACCAGTTGCTGTTAATTTAGACCCTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGACACTTAGCTCTAAAAATACCAGTTGCTGTTAATTTAGACCCTAT  886

seq1  ACACATTTCTGGGTACAACTTAATCAACTCATGCCCATCATACAATGTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTTCTGGGTACAACTTAATCAACTCATGCCCATCATACAATGTTT  936

seq1  TGCATATTGATAAGATCTGATGGGTATTTTTGTAGTAATTCTAAAATACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATTGATAAGATCTGATGGGTATTTTTGTAGTAATTCTAAAATACA  986

seq1  TAATTGCTTCAAACAGCTCTTACCTATAAAACTGGGAATTGTTGTAGAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGCTTCAAACAGCTCTTACCTATAAAACTGGGAATTGTTGTAGAGA  1036

seq1  GTGGCGTGAGACTCCATAAGATGGAATTC  1078
      |||||||||||||||||||||||||||||
seq2  GTGGCGTGAGACTCCATAAGATGGAATTC  1065