BAC Information

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BAC

Clone NameB6Ng01-157E11
Chromosome18 (Build37)
Map Location 17,279,212 - 17,280,377
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040202, Ppia-ps18_172.1, EG665509, Cdh2, LOC665519, 1700001G01Rik
Downstream gene4921533I20Rik, LOC100040647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157E11.bB6Ng01-157E11.g
ACCDH951557DH951558
length1,0951,126
definitionDH951557|Mus musculus domesticus DNA, BAC clone: B6Ng01-157E11, 5' end.DH951558|Mus musculus domesticus DNA, BAC clone: B6Ng01-157E11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcatatattgaaccacctctgcatcagtggcatgaagaatgctt
ttttatgctgaatgattttcttgatgtgttcttgtattggtttgcaagaa
ttttatgttgaatttttgccttgatattcataagggaaattggactgaac
ttctctttcttctctttctttgttgggtctttgtgttgtttaagtatcag
ggtaactgtggcctcatagaataaattaggtagtgtttcttttgtggaat
agtttgtggagtatcggttttagctcttctttgaaagtcttgtaggattc
tgcactaaatccatctgaccctgggcttttatatttggttgggagacttt
ggtgactgcttctttttccctatggtactgttaagtagtttacctgattt
tgatttaactttgatatatataatatgtctagatattcagccattccatt
cagattttccatattcgtgcaatacaaattatttttggatttcctcagtt
tctgttgtttgggggtgaagagttctataggtatctgttaagtccatttg
gttcataacatctgttagtttcattatttctctgtttagttactgtttaa
tgacctttctttgctgggagttgagtcatgaagtactccactattattat
gtccaattcaatgtgtgatttgatctttattaagaaaaatttttggcaaa
tatgatgtgcccttgtatttgagacaaagatgtttcaaattgagatgtca
tcctgctggattcctccattgatgaatatgaagtcttcttcccctttcct
tttggttattatttttttgaaagtctattttattagatatttgaactttt
tcctacttccatttgcttggaaaactttttccagccctttactctgtggt
agtatatatctttgtgctgatgtgtgtttcttgtatgcatagatgatgga
tctgtggtacaaatccgtccatatctcgtggtcttttattttgaacaagt
cagggtaaaagaaataatgaccaatattgttagtcctcgtatttttaggc
ggggggggatgcggggtggaggtactccctctggtttgccgagag
gaattcctttacagggtgtaggtcatataggtcacccactccttcattgg
ctgtgcagaaggactccactgtatggcatcagggaaatccagagaaatgt
ccatgtcctcaggtttagtatcaggaaatgtcctcatgtgtaatgaaatt
attcaaggaattgtggatttgacatggtataataaatacaaaactgttat
atcaaaattttatatatgtttacatatttaattttatatatgcttacatc
cattatttaaatggatgtgggtaagataccaaattcagaaattattccac
aatagataaattatgtttcaaagattgtacttaaattctcattttacatt
acttttattctacgacatggtgatctgtctttcttactatctactttctc
atgtgtttgaccccaagagagcatagaacagtactttaaagctatagcct
gcagcctccctacctctagtcttacattttcttatctcaaccagagtgtg
catcattcttaattctttcctcttccatgtctttcatgacctattctcat
gtctatcttacttatcatatgcttattctctctataaactctgcgccaca
tccagtgctatctctagtccatatttctgtgatcttttatatggaaaaag
tatttgttactagtctataagttctgtattgtgccaggtttcccatgaat
gaattttaccaactccaaagctaagtaactttgtgactgttgaatttgtc
taaccttacttcctatttactcttccctttgaccttaaactctgcaaaga
gtagattgtctttttctctgaatacagcaatacctgttctgctctacaaa
ctttaaacatatagtacttttcagacatattactattttaacatgacctc
aactacataattcttataccacagttggctgttatatatttcgttttata
gcatttataaacattatatctatgactgcattttgatgtaggatgacaga
tgtgttatatcactgctactaatattggttttataaccttaaaaatacca
taacataacatatatatgttgcttatcgagctgtggaacctctttagcca
gagaaactgtcctttaaatgtaacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_17279212_17280377
seq2: B6Ng01-157E11.g_68_1193 (reverse)

seq1  ATGTTATCATTTTTAAAATGTGACAGTTTTTTCTCTGTGCTAAAAGAGGT  50
      |||||| |||||   |||   |||||   |||||||| ||| ||||||||
seq2  ATGTTA-CATTT---AAA--GGACAG---TTTCTCTG-GCT-AAAGAGGT  39

seq1  TTCACAAGCTCTGATAAGCAAACCATTATATATGGTTTATGGTTATGGGT  100
      | ||| ||||| |||||||||  || ||||||||  |||| |||||||  
seq2  TCCAC-AGCTC-GATAAGCAA--CA-TATATATG--TTAT-GTTATGG--  79

seq1  TATTTTTTATGTTTATAAAAACCCAATATATAGGTTAGCAGTTGATATAA  150
      || |||||| | ||||||||  ||||||| |||  |||||| ||||||||
seq2  TA-TTTTTAAGGTTATAAAA--CCAATAT-TAG--TAGCAG-TGATATAA  122

seq1  CCAACATCTGTCATTCCTAACATCAAAAATTGCAGTCAATAGATATAATT  200
      |  |||||||||| |||| |||||||||  ||||||| |||||||||| |
seq2  C--ACATCTGTCA-TCCT-ACATCAAAA--TGCAGTC-ATAGATATAA-T  164

seq1  GTTTTATTAAATGCTATAAAAATGAAATATATAACAGCCAACTGTGGTAA  250
      ||||   |||||||||| |||| ||||||||||||||||||||||||| |
seq2  GTTT--ATAAATGCTAT-AAAACGAAATATATAACAGCCAACTGTGGT-A  210

seq1  TAAGAATTATGTAGTTGAGGTCATGTTAAAATAGTAATATGTCTGAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATTATGTAGTTGAGGTCATGTTAAAATAGTAATATGTCTGAAAAG  260

seq1  TACTATATGTTTAAAGTTTGTAGAGCAGAACAGGTATTGCTGTATTCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATATGTTTAAAGTTTGTAGAGCAGAACAGGTATTGCTGTATTCAGA  310

seq1  GAAAAAGACAATCTACTCTTTGCAGAGTTTAAGGTCAAAGGGAAGAGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGACAATCTACTCTTTGCAGAGTTTAAGGTCAAAGGGAAGAGTAA  360

seq1  ATAGGAAGTAAGGTTAGACAAATTCAACAGTCACAAAGTTACTTAGCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAGTAAGGTTAGACAAATTCAACAGTCACAAAGTTACTTAGCTTT  410

seq1  GGAGTTGGTAAAATTCATTCATGGGAAACCTGGCACAATACAGAACTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTGGTAAAATTCATTCATGGGAAACCTGGCACAATACAGAACTTAT  460

seq1  AGACTAGTAACAAATACTTTTTCCATATAAAAGATCACAGAAATATGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAGTAACAAATACTTTTTCCATATAAAAGATCACAGAAATATGGAC  510

seq1  TAGAGATAGCACTGGATGTGGCGCAGAGTTTATAGAGAGAATAAGCATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATAGCACTGGATGTGGCGCAGAGTTTATAGAGAGAATAAGCATAT  560

seq1  GATAAGTAAGATAGACATGAGAATAGGTCATGAAAGACATGGAAGAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGTAAGATAGACATGAGAATAGGTCATGAAAGACATGGAAGAGGAA  610

seq1  AGAATTAAGAATGATGCACACTCTGGTTGAGATAAGAAAATGTAAGACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAAGAATGATGCACACTCTGGTTGAGATAAGAAAATGTAAGACTA  660

seq1  GAGGTAGGGAGGCTGCAGGCTATAGCTTTAAAGTACTGTTCTATGCTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAGGGAGGCTGCAGGCTATAGCTTTAAAGTACTGTTCTATGCTCTC  710

seq1  TTGGGGTCAAACACATGAGAAAGTAGATAGTAAGAAAGACAGATCACCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTCAAACACATGAGAAAGTAGATAGTAAGAAAGACAGATCACCAT  760

seq1  GTCGTAGAATAAAAGTAATGTAAAATGAGAATTTAAGTACAATCTTTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTAGAATAAAAGTAATGTAAAATGAGAATTTAAGTACAATCTTTGAA  810

seq1  ACATAATTTATCTATTGTGGAATAATTTCTGAATTTGGTATCTTACCCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATTTATCTATTGTGGAATAATTTCTGAATTTGGTATCTTACCCAC  860

seq1  ATCCATTTAAATAATGGATGTAAGCATATATAAAATTAAATATGTAAACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTTAAATAATGGATGTAAGCATATATAAAATTAAATATGTAAACA  910

seq1  TATATAAAATTTTGATATAACAGTTTTGTATTTATTATACCATGTCAAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAAATTTTGATATAACAGTTTTGTATTTATTATACCATGTCAAAT  960

seq1  CCACAATTCCTTGAATAATTTCATTACACATGAGGACATTTCCTGATACT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATTCCTTGAATAATTTCATTACACATGAGGACATTTCCTGATACT  1010

seq1  AAACCTGAGGACATGGACATTTCTCTGGATTTCCCTGATGCCATACAGTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGAGGACATGGACATTTCTCTGGATTTCCCTGATGCCATACAGTG  1060

seq1  GAGTCCTTCTGCACAGCCAATGAAGGAGTGGGTGACCTATATGACCTACA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTTCTGCACAGCCAATGAAGGAGTGGGTGACCTATATGACCTACA  1110

seq1  CCCTGTAAAGGAATTC  1166
      ||||||||||||||||
seq2  CCCTGTAAAGGAATTC  1126