BAC Information

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BAC

Clone NameB6Ng01-157F18
Chromosome18 (Build37)
Map Location 31,188,231 - 31,322,758
singlet/doubletdoublet
Overlap geneRit2
Upstream genePik3c3, LOC666094, LOC666100, EG666111, EG666114, LOC433168
Downstream geneEG666130, Syt4, LOC383420, Slc25a46, Sap130, LOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157F18.bB6Ng01-157F18.g
ACCDH951615DH951616
length9741,141
definitionDH951615|Mus musculus domesticus DNA, BAC clone: B6Ng01-157F18, 5' end.DH951616|Mus musculus domesticus DNA, BAC clone: B6Ng01-157F18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,188,231 - 31,189,011)(31,321,608 - 31,322,758)
sequence
gaattctcagagtgctagagtaaatgtgaacacaggatttgtgagttttc
agaagacagaacgtgtacctctcaaagttgtttgcaaaagcagtgattta
gcatttctgatctttgggttgcctgggataaccaagggagtaaattacta
ttgggaagaactagaatagcaacacagaagtttgttacagggtatgtttt
gttgagactcaccatgggattctggaaattgatctacttcataagaagag
acgctaagcactaaagaatgtaagaggacaaaaaggagtcaaaaaacata
aatgaacaaacaaacaaagacaagatcccttcaaagaatggactgggacg
tgatcagagatttctcaaaggaagaaaaatatagctaagaagtatcttta
aaaacattcatcatacctagtaaatagagaactgaaaattaattcaagtt
tgagatttcatctcactcacattagaatggagatggtcaacagaacaacc
aacaacaacaacaacaaacctgaagaagtagaggaaagggaaccctcact
cactatgggtaggattgcaaactggtgcaggccctataggaatcagagta
gagaattcttaaaagcttaccaataaatctactatatgagctagctatcc
cattccttagactatgcccagaggaattgaattctcttccacagatagcg
ctcagccatcttcactattgctctattcacaagagctagaaaatggaaac
agcctaaatgtcctttatccaaaaccgggagtacttccttttacacaaag
aatcactgttcattgacatagagaatgaatcatgaacttggtaggcaaat
gcattaaacaggaaaagattatactgagtgaggtaacctaataggcataa
tatttttctttcatgggagattcctaattcccatattcaggggtgagcaa
ataaagagatggagtaactaaaga
gaattcttgttaattatccatgaatgttgaacaatgaccttacattttca
ttttttcactaggactataacttatagagtggctcctgtattgcaaactt
ggtttatttcaaagtgtattagagtcagagatttttcaggacctactttc
atagtagcctaattctatagttcttaaattctcattgttcaatgtcaaca
ttatgattgatagtcttcccagtattttaagtgtaaaagtccaggagatt
tcaactacattttccccatcttcacacactgatttattttctcctttcat
attagataagctgtccccagtgttttgaggttcaaggaaattgcttggca
tagctaggattggaaccagactgtgtcactggaaacatgcactgcagatc
ctgatgtgttggcattgaaggaactgccctttgatcaactccaggaaaga
cactatcctcagccctaagtcttaaggaactgcaagtggtcattttagac
tttagttttctgggtgttcaaactgtcagtcaaatttagttttcttcctg
tatcctgattttaatatcttattttctacgttctttgctgtttagctatg
aatattttccttcattatatgtattcttttaagccacattgaatcttaga
tgcctgacttgtgtaaatgctcaataaatatttgatgaataagctaagca
gagtatgtatactatctatgatacactgcatttctaaaaatacagacaga
cagagcaacttataatgatggagagagtgttattttctgggggaaaaaga
tagtattcccagacatatttttcattttaggtacaattttactccatgtt
acctacatttataaaatcgttttgctcattttcgtcttcattgacctatt
gaacttgcataggaattcagattgagacggaggatttattttcatactat
tttcagttctggttttcacatacattgtaataattgataccagctgaatt
tttgtctatgtttattggttctattcttcttctatcaaaaaaatgaagga
aggcaatgatactggtgtggtgaaacactcctgggtgagcttggcacttg
caggtcagtcaccgaggcttgttgaattcaagctacctagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_31188231_31189011
seq2: B6Ng01-157F18.b_45_825

seq1  GAATTCTCAGAGTGCTAGAGTAAATGTGAACACAGGATTTGTGAGTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGAGTGCTAGAGTAAATGTGAACACAGGATTTGTGAGTTTTC  50

seq1  AGAAGACAGAACGTGTACCTCTCAAAGTTGTTTGCAAAAGCAGTGATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACAGAACGTGTACCTCTCAAAGTTGTTTGCAAAAGCAGTGATTTA  100

seq1  GCATTTCTGATCTTTGGGTTGCCTGGGATAACCAAGGGAGTAAATTACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCTGATCTTTGGGTTGCCTGGGATAACCAAGGGAGTAAATTACTA  150

seq1  TTGGGAAGAACTAGAATAGCAACACAGAAGTTTGTTACAGGGTATGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAGAACTAGAATAGCAACACAGAAGTTTGTTACAGGGTATGTTTT  200

seq1  GTTGAGACTCACCATGGGATTCTGGAAATTGATCTACTTCATAAGAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGACTCACCATGGGATTCTGGAAATTGATCTACTTCATAAGAAGAG  250

seq1  ACGCTAAGCACTAAAGAATGTAAGAGGACAAAAAGGAGTCAAAAAACATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTAAGCACTAAAGAATGTAAGAGGACAAAAAGGAGTCAAAAAACATA  300

seq1  AATGAACAAACAAACAAAGACAAGATCCCTTCAAAGAATGGACTGGGACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACAAACAAACAAAGACAAGATCCCTTCAAAGAATGGACTGGGACG  350

seq1  TGATCAGAGATTTCTCAAAGGAAGAAAAATATAGCTAAGAAGTATCTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAGAGATTTCTCAAAGGAAGAAAAATATAGCTAAGAAGTATCTTTA  400

seq1  AAAACATTCATCATACCTAGTAAATAGAGAACTGAAAATTAATTCAAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTCATCATACCTAGTAAATAGAGAACTGAAAATTAATTCAAGTT  450

seq1  TGAGATTTCATCTCACTCACATTAGAATGGAGATGGTCAACAGAACAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTTCATCTCACTCACATTAGAATGGAGATGGTCAACAGAACAACC  500

seq1  AACAACAACAACAACAAACCTGAAGAAGTAGAGGAAAGGGAACCCTCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAACAACAACAAACCTGAAGAAGTAGAGGAAAGGGAACCCTCACT  550

seq1  CACTATGGGTAGGATTGCAAACTGGTGCAGGCCCTATAGGAATCAGAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATGGGTAGGATTGCAAACTGGTGCAGGCCCTATAGGAATCAGAGTA  600

seq1  GAGAATTCTTAAAAGCTTACCAATAAATCTACTATATGAGCTAGCTATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTCTTAAAAGCTTACCAATAAATCTACTATATGAGCTAGCTATCC  650

seq1  CATTCCTTAGACTATGCCCAGAGGAATTGAATTCTCTTCCACAGATAGCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTTAGACTATGCCCAGAGGAATTGAATTCTCTTCCACAGATAGCG  700

seq1  CTCAGCCATCTTCACTATTGCTCTATTCACAAGAGCTAGAAAATGGAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCATCTTCACTATTGCTCTATTCACAAGAGCTAGAAAATGGAAAC  750

seq1  AGCCTAAATGTCCTTTATCCAAAACCGGGAG  781
      |||||||||||||||||||||||||||||||
seq2  AGCCTAAATGTCCTTTATCCAAAACCGGGAG  781

seq1: chr18_31321608_31322758
seq2: B6Ng01-157F18.g_66_1206 (reverse)

seq1  ACTAGGGTAGCTTTGAATTCACAAAGCTCTGTGTGACTGTGCCCTGCAAG  50
      |||| |||||| |||||||||  |||| ||  |||||  || ||||||||
seq2  ACTA-GGTAGC-TTGAATTCAACAAGC-CTCGGTGAC--TGACCTGCAAG  45

seq1  TGCCAAGCTCA--CAGGAGTGTAT-ACCACACACCCAGGTGTTCATTGCT  97
      |||||||||||  ||||||||| | ||||||   ||||    ||||||| 
seq2  TGCCAAGCTCACCCAGGAGTGTTTCACCACA---CCAG--TATCATTGCC  90

seq1  TTTCTTTTCATTTTTTTGATAGAAGGAAGAATAGAACCAATAAACATAGA  147
      || |  |||||||||||||||||| |||||||||||||||||||||||||
seq2  TTCC--TTCATTTTTTTGATAGAA-GAAGAATAGAACCAATAAACATAGA  137

seq1  CAAAAATTCAGCTGGTATCAATTTATTACAATGTATGTGAAAACCAGAAC  197
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAAAAATTCAGCTGGTATCAA-TTATTACAATGTATGTGAAAACCAGAAC  186

seq1  TGAAAATAGTATGGAGAATAAATCTTCCGTCTCAATCTG-ATTCCTATGC  246
      |||||||||||| || |||||||| |||||||||||||| ||||||||||
seq2  TGAAAATAGTAT-GAAAATAAATCCTCCGTCTCAATCTGAATTCCTATGC  235

seq1  AAGTTCAATAGGTCAATGAAGACGAAAATGAGC-AAACGATTTTATAAAT  295
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAGTTCAATAGGTCAATGAAGACGAAAATGAGCAAAACGATTTTATAAAT  285

seq1  GTAGGTAACATGGAGTAAAATTGTACCTAAAATGAAAAATATGTCTGGGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTAACATGGAGTAAAATTGTACCTAAAATGAAAAATATGTCTGGGA  335

seq1  ATACTATCTTTTTCCCCCAGAAAATAACACTCTCTCCATCATTATAAGTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATCTTTTTCCCCCAGAAAATAACACTCTCTCCATCATTATAAGTT  385

seq1  GCTCTGTCTGTCTGTATTTTTAGAAATGCAGTGTATCATAGATAGTATAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTCTGTCTGTATTTTTAGAAATGCAGTGTATCATAGATAGTATAC  435

seq1  ATACTCTGCTTAGCTTATTCATCAAATATTTATTGAGCATTTACACAAGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTGCTTAGCTTATTCATCAAATATTTATTGAGCATTTACACAAGT  485

seq1  CAGGCATCTAAGATTCAATGTGGCTTAAAAGAATACATATAATGAAGGAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATCTAAGATTCAATGTGGCTTAAAAGAATACATATAATGAAGGAA  535

seq1  AATATTCATAGCTAAACAGCAAAGAACGTAGAAAATAAGATATTAAAATC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCATAGCTAAACAGCAAAGAACGTAGAAAATAAGATATTAAAATC  585

seq1  AGGATACAGGAAGAAAACTAAATTTGACTGACAGTTTGAACACCCAGAAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATACAGGAAGAAAACTAAATTTGACTGACAGTTTGAACACCCAGAAA  635

seq1  ACTAAAGTCTAAAATGACCACTTGCAGTTCCTTAAGACTTAGGGCTGAGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGTCTAAAATGACCACTTGCAGTTCCTTAAGACTTAGGGCTGAGG  685

seq1  ATAGTGTCTTTCCTGGAGTTGATCAAAGGGCAGTTCCTTCAATGCCAACA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTCTTTCCTGGAGTTGATCAAAGGGCAGTTCCTTCAATGCCAACA  735

seq1  CATCAGGATCTGCAGTGCATGTTTCCAGTGACACAGTCTGGTTCCAATCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGATCTGCAGTGCATGTTTCCAGTGACACAGTCTGGTTCCAATCC  785

seq1  TAGCTATGCCAAGCAATTTCCTTGAACCTCAAAACACTGGGGACAGCTTA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTATGCCAAGCAATTTCCTTGAACCTCAAAACACTGGGGACAGCTTA  835

seq1  TCTAATATGAAAGGAGAAAATAAATCAGTGTGTGAAGATGGGGAAAATGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATATGAAAGGAGAAAATAAATCAGTGTGTGAAGATGGGGAAAATGT  885

seq1  AGTTGAAATCTCCTGGACTTTTACACTTAAAATACTGGGAAGACTATCAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAAATCTCCTGGACTTTTACACTTAAAATACTGGGAAGACTATCAA  935

seq1  TCATAATGTTGACATTGAACAATGAGAATTTAAGAACTATAGAATTAGGC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATGTTGACATTGAACAATGAGAATTTAAGAACTATAGAATTAGGC  985

seq1  TACTATGAAAGTAGGTCCTGAAAAATCTCTGACTCTAATACACTTTGAAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGAAAGTAGGTCCTGAAAAATCTCTGACTCTAATACACTTTGAAA  1035

seq1  TAAACCAAGTTTGCAATACAGGAGCCACTCTATAAGTTATAGTCCTAGTG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCAAGTTTGCAATACAGGAGCCACTCTATAAGTTATAGTCCTAGTG  1085

seq1  AAAAAATGAAAATGTAAGGTCATTGTTCAACATTCATGGATAATTAACAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGAAAATGTAAGGTCATTGTTCAACATTCATGGATAATTAACAA  1135

seq1  GAATTC  1151
      ||||||
seq2  GAATTC  1141