BAC Information

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BAC

Clone NameB6Ng01-157I09
Chromosome18 (Build37)
Map Location 78,823,243 - 78,869,775
singlet/doubletdoublet
Overlap genenone
Upstream gene8030462N17Rik, 4930465K10Rik, Ccdc5, Atp5a1, Pstpip2, 5430411K18Rik, Cd33l3, Slc14a1, Slc14a2, EG620155
Downstream geneSetbp1, LOC100039242, LOC100039250
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157I09.bB6Ng01-157I09.g
ACCDH951734DH951735
length944377
definitionDH951734|Mus musculus domesticus DNA, BAC clone: B6Ng01-157I09, 5' end.DH951735|Mus musculus domesticus DNA, BAC clone: B6Ng01-157I09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,823,243 - 78,823,851)(78,869,389 - 78,869,775)
sequence
gaattcaccaagcacacacagacaagtgagataaccattcataagcaatg
ggctcagagaaagatctgtttgccatcaatgctcatgcatacgtattcaa
agaaaatcccacttctattttctttttttgtttgttttttgttttctttt
tcttctttttttattagatattttcttcatttatatccaaatgctatccc
caaagttccctataccctccactgccctgctccccaatccacccactcct
gcttcctggccctgtcattcccctatactggggcatatgatcttcacaag
accaagggcctctcctcccattgatggctgactaggctatcctctgctac
atatgcaactagagacacaggtctggggggtactggttagttcatattgt
tgttcctcctatagggttgcagacccctttagctccttggatattttctc
taactccttcattaggggccctgtgtttcatccaatagctgactgtgagc
atccacttctgtatttgccaggcactagcatagcctcataagagagagct
atgtcagggtcctgtcagcaaaagctttctggcatatgtaatagagtctg
ggtttggtggttgtatatgggatggatacccgagtggggcagtctctgga
tggtccttccttttgtctcagctctgaactttgtctctgtaactccttcc
atgggtattttgttccccattctaaggaggaacaaagtatccacactata
cccagaagatgttccaacttgtaataaggacacatgctccactatgttca
tagcacccttatatataatagaagctagaaataacccagatgtccctcaa
cagaggaatggatacagaaaatgtggtacatttatacaatggagtactac
tcagcaattaaaaacaatgaatttatgaattcttaggcaaatgg
atagtcactacctcgctggcggctgcaaaggggacagatgcccaaggagt
ccctcagtcagtggtcgctactgatggtgccagtgaagaggggttctaga
tggtcaaattgtaataccacacagcatgttcctattgtcctttctacatt
ttcaaccttgtatctaaaacataggctgtaactactgtggatcacagacc
ccgggtttctgaatattttcttgcaacatagaaagatgcatttctttaca
ctatgaaatacgttatgatgactcccacaaaggagtgatctccttggttt
ggtgtgtgtgtgtctctctctctctctctctctctctctctctctctctc
tctctctctctctctgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_78823243_78823851
seq2: B6Ng01-157I09.b_46_654

seq1  GAATTCACCAAGCACACACAGACAAGTGAGATAACCATTCATAAGCAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAAGCACACACAGACAAGTGAGATAACCATTCATAAGCAATG  50

seq1  GGCTCAGAGAAAGATCTGTTTGCCATCAATGCTCATGCATACGTATTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGAGAAAGATCTGTTTGCCATCAATGCTCATGCATACGTATTCAA  100

seq1  AGAAAATCCCACTTCTATTTTCTTTTTTTGTTTGTTTTTTGTTTTCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATCCCACTTCTATTTTCTTTTTTTGTTTGTTTTTTGTTTTCTTTT  150

seq1  TCTTCTTTTTTTATTAGATATTTTCTTCATTTATATCCAAATGCTATCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTTTTTATTAGATATTTTCTTCATTTATATCCAAATGCTATCCC  200

seq1  CAAAGTTCCCTATACCCTCCACTGCCCTGCTCCCCAATCCACCCACTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTCCCTATACCCTCCACTGCCCTGCTCCCCAATCCACCCACTCCT  250

seq1  GCTTCCTGGCCCTGTCATTCCCCTATACTGGGGCATATGATCTTCACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTGGCCCTGTCATTCCCCTATACTGGGGCATATGATCTTCACAAG  300

seq1  ACCAAGGGCCTCTCCTCCCATTGATGGCTGACTAGGCTATCCTCTGCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGGGCCTCTCCTCCCATTGATGGCTGACTAGGCTATCCTCTGCTAC  350

seq1  ATATGCAACTAGAGACACAGGTCTGGGGGGTACTGGTTAGTTCATATTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCAACTAGAGACACAGGTCTGGGGGGTACTGGTTAGTTCATATTGT  400

seq1  TGTTCCTCCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGATATTTTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTCCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGATATTTTCTC  450

seq1  TAACTCCTTCATTAGGGGCCCTGTGTTTCATCCAATAGCTGACTGTGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCCTTCATTAGGGGCCCTGTGTTTCATCCAATAGCTGACTGTGAGC  500

seq1  ATCCACTTCTGTATTTGCCAGGCACTAGCATAGCCTCATAAGAGAGAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTTCTGTATTTGCCAGGCACTAGCATAGCCTCATAAGAGAGAGCT  550

seq1  ATGTCAGGGTCCTGTCAGCAAAAGCTTTCTGGCATATGTAATAGAGTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGGGTCCTGTCAGCAAAAGCTTTCTGGCATATGTAATAGAGTCTG  600

seq1  GGTTTGGTG  609
      |||||||||
seq2  GGTTTGGTG  609

seq1: chr18_78869389_78869775
seq2: B6Ng01-157I09.g_67_449 (reverse)

seq1  ACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50
      ||||||||||||    ||||||||||||||||||||||||||||||||||
seq2  ACACACACACAC----AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  46

seq1  AGAGAGAGAGAGAGAGAGACACACACACACCAAACCAAGGAGATCACTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGACACACACACACCAAACCAAGGAGATCACTCC  96

seq1  TTTGTGGGAGTCATCATAACGTATTTCATAGTGTAAAGAAATGCATCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGGAGTCATCATAACGTATTTCATAGTGTAAAGAAATGCATCTTT  146

seq1  CTATGTTGCAAGAAAATATTCAGAAACCCGGGGTCTGTGATCCACAGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTGCAAGAAAATATTCAGAAACCCGGGGTCTGTGATCCACAGTAG  196

seq1  TTACAGCCTATGTTTTAGATACAAGGTTGAAAATGTAGAAAGGACAATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGCCTATGTTTTAGATACAAGGTTGAAAATGTAGAAAGGACAATAG  246

seq1  GAACATGCTGTGTGGTATTACAATTTGACCATCTAGAACCCCTCTTCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGCTGTGTGGTATTACAATTTGACCATCTAGAACCCCTCTTCACT  296

seq1  GGCACCATCAGTAGCGACCACTGACTGAGGGACTCCTTGGGCATCTGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCATCAGTAGCGACCACTGACTGAGGGACTCCTTGGGCATCTGTCC  346

seq1  CCTTTGCAGCCGCCAGCGAGGTAGTGACTATGAATTC  387
      |||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCAGCCGCCAGCGAGGTAGTGACTATGAATTC  383