BAC Information

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BAC

Clone NameB6Ng01-158N21
Chromosome18 (Build37)
Map Location 36,469,325 - 36,643,840
singlet/doubletdoublet
Overlap gene0610010O12Rik, Pfdn1
Upstream geneSil1, LOC100041423, LOC666460, LOC666462, EG383341, EG436583, Matr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5, LOC100042131, Psd2, LOC100042150, LOC100041531, Pura
Downstream geneHbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2, EG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158N21.bB6Ng01-158N21.g
ACCDH952699DH952700
length1,1361,044
definitionDH952699|Mus musculus domesticus DNA, BAC clone: B6Ng01-158N21, 5' end.DH952700|Mus musculus domesticus DNA, BAC clone: B6Ng01-158N21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,642,705 - 36,643,840)(36,469,325 - 36,470,355)
sequence
gaattctatgcccctgaaagtggaaggaaagaaaccactctacaaactta
acctctgacctacacacacacacacatacacacacacacacacacacaca
cacacacacacacacacacacacacactgtgacactctgtggcacacaga
ttgcacccccaccccatcccagtgtacacacacactgataaaaatgatga
tgatgataaataaaataaaattcctttgctaattttgatgacaagtcatg
tctttgggaacaccattttgaagtagtaatttaaaaaaatctgacagctg
ggtgtagtggtgcacgcctttaatcccagaactcaggagtcagaggcagg
taatctctgtgagttcaagaccagcctggtctacaaagtgaatttcagag
ctacgtagtgagatcccatctttaaaaaatttatctgactattattcctt
attttatgtgtaccggtgctttgcttgtagatcacactcgtgcctggtgc
tcgaggaagccagaagattcctggagctggaattatggagggctgtgagc
tgctatgtggacacagggaattgaaggcatgtcctctgcatcacagagct
ctttcctgcttgctgggccacctctgcacctgaagagatgcaattcttaa
cctgggttattgaggcctttctcaaacattaaggaatgtagtggtttgat
aagactggtcaccataggctcatagctttgaatgcttagggagtggcatt
aggagatgtggttttgtaggaggaagtttgtcactgggtgggctttgagg
ttttaaatgttcaagccaggcccattgcctctctttcttcctgctgcctc
tccagtttcatgtctgcctgcttgctgccctgcttcctgttgtgacagaa
tggactaaccctctgaactgtaagctagccccatttaaatgttttcctta
taaaggttgctttgggtacggcatctctacacagcaataggattcttgac
taggacaggggctacccagatccagaacaacatctaaagacaccagccat
atgcttgctggagaattcctgagacaggctggttaccccacacacctcag
aattccaaagcattgatgcatcaggtcttttctcta
gaattctcttcctttagcaggttgtggtggtacgtgcctgtaatcccaac
acctaggtagaggaaggaggatcagaaatttgaagtacactgggcagtgg
tggcgcacgccttttaatcctagcacttgggaggcagaggtaagtggatt
tctgagttcgagggcagcctggtctacagagtgagttccaggacagccag
ggctatacagagaaatcctgtctcgaaaaaccaaaaaacaaacaaaaaaa
acaaaaaacaaaaaaaagaattcttgagttcaaggccagcctgtgctgtt
taagatcctgtcttaaaaggagtgtgggagtaggtaggaaattcttcctg
attttaaatgaggttaaaatgaggctcagctacatttaaaataaatgtag
ggtctttagttagactcaaaaagcaaagtcatggggctggaagatggctc
agtggttaaaagcactggctgctcttccagaggttccaagttcaattccc
agcacccacatgtctcacagctgtctgtaactccagtttcagggggatcc
aacaccctcacacaggcatacatgccggcaaaataccaattcacataaaa
acaaaaaactaacagaaaccaggggctggagagttcagcagttaagtgtg
attactgctcctctaatggacctgaagtcagttctcagcacccacgtcta
gtgactcacagccggccatctgtgcttctaattccaagaatctagtgtcc
tcgtctggtctctgtggacactacatatatggcatatacaagcacacatg
ccaaaaaaaaaataactcccttcttgggaggggtgacaataaagtggggg
cagtcgatggggtaaaagtctttcagcagcagtcaatgtttcaaggcaga
aatgacttagaatggcaagcatgtctacagcttaacagccagtcttccat
ccagctggagggaaatcccaccctgagtccctcccccttccgcttagtcc
ttttctactctttttactgtgcaagaagactccttgtctctgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_36642705_36643840
seq2: B6Ng01-158N21.b_45_1180 (reverse)

seq1  TAGAGAAATGAACTTGATGCATCAATGCTTTGGGAATCCTGAGTGTTGTG  50
      |||||||| | || ||||||||||||||||| ||||| |||||   ||||
seq2  TAGAGAAAAG-ACCTGATGCATCAATGCTTT-GGAATTCTGAGGTGTGTG  48

seq1  AGTATACCAGCCTGTCT-AGGATATCTTCAGC-AGCATAT-GCTGTGTGT  97
       |   |||||||||||| ||||  ||| |||| ||||||| |||| ||||
seq2  GGGTAACCAGCCTGTCTCAGGAATTCTCCAGCAAGCATATGGCTG-GTGT  97

seq1  CTTTAGATGTTGTTCTGGATCTGGGTAGCCCCTGTCTTAGTC-AGGATCC  146
      |||||||||||||||||||||||||||||||||||| ||||| || ||||
seq2  CTTTAGATGTTGTTCTGGATCTGGGTAGCCCCTGTCCTAGTCAAGAATCC  147

seq1  TATTGCTGTGTAGAGATGCCGTGACCAAAGCAACCTTTATAAGGAAAACA  196
      ||||||||||||||||||||||  ||||||||||||||||||||||||||
seq2  TATTGCTGTGTAGAGATGCCGTACCCAAAGCAACCTTTATAAGGAAAACA  197

seq1  TTTAAATGGGGCTAGCTTACAGTTCAGAGGGTTAGTCCATTCTTGTCACA  246
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTAAATGGGGCTAGCTTACAGTTCAGAGGGTTAGTCCATTC-TGTCACA  246

seq1  ACAGGAAGCAGGGCAGCAAGCAGGCAGACATGAAACTGGAGAGGCAGCAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAGCAGGGCAGCAAGCAGGCAGACATGAAACTGGAGAGGCAGCAG  296

seq1  GAAGAAAGAGAGGCAATGGGCCTGGCTTGAACATTTAAAACCTCAAAGCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAGAGAGGCAATGGGCCTGGCTTGAACATTTAAAACCTCAAAGCC  346

seq1  CACCCAGTGACAAACTTCCTCCTACAAAACCACATCTCCTAATGCCACTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGTGACAAACTTCCTCCTACAAAACCACATCTCCTAATGCCACTC  396

seq1  CCTAAGCATTCAAAGCTATGAGCCTATGGTGACCAGTCTTATCAAACCAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGCATTCAAAGCTATGAGCCTATGGTGACCAGTCTTATCAAACCAC  446

seq1  TACATTCCTTAATGTTTGAGAAAGGCCTCAATAACCCAGGTTAAGAATTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCCTTAATGTTTGAGAAAGGCCTCAATAACCCAGGTTAAGAATTG  496

seq1  CATCTCTTCAGGTGCAGAGGTGGCCCAGCAAGCAGGAAAGAGCTCTGTGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTTCAGGTGCAGAGGTGGCCCAGCAAGCAGGAAAGAGCTCTGTGA  546

seq1  TGCAGAGGACATGCCTTCAATTCCCTGTGTCCACATAGCAGCTCACAGCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGGACATGCCTTCAATTCCCTGTGTCCACATAGCAGCTCACAGCC  596

seq1  CTCCATAATTCCAGCTCCAGGAATCTTCTGGCTTCCTCGAGCACCAGGCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATAATTCCAGCTCCAGGAATCTTCTGGCTTCCTCGAGCACCAGGCA  646

seq1  CGAGTGTGATCTACAAGCAAAGCACCGGTACACATAAAATAAGGAATAAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTGTGATCTACAAGCAAAGCACCGGTACACATAAAATAAGGAATAAT  696

seq1  AGTCAGATAAATTTTTTAAAGATGGGATCTCACTACGTAGCTCTGAAATT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGATAAATTTTTTAAAGATGGGATCTCACTACGTAGCTCTGAAATT  746

seq1  CACTTTGTAGACCAGGCTGGTCTTGAACTCACAGAGATTACCTGCCTCTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGTAGACCAGGCTGGTCTTGAACTCACAGAGATTACCTGCCTCTG  796

seq1  ACTCCTGAGTTCTGGGATTAAAGGCGTGCACCACTACACCCAGCTGTCAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGAGTTCTGGGATTAAAGGCGTGCACCACTACACCCAGCTGTCAG  846

seq1  ATTTTTTTAAATTACTACTTCAAAATGGTGTTCCCAAAGACATGACTTGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTAAATTACTACTTCAAAATGGTGTTCCCAAAGACATGACTTGT  896

seq1  CATCAAAATTAGCAAAGGAATTTTATTTTATTTATCATCATCATCATTTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAATTAGCAAAGGAATTTTATTTTATTTATCATCATCATCATTTT  946

seq1  TATCAGTGTGTGTGTACACTGGGATGGGGTGGGGGTGCAATCTGTGTGCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTGTGTGTGTACACTGGGATGGGGTGGGGGTGCAATCTGTGTGCC  996

seq1  ACAGAGTGTCACAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTGTCACAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  1046

seq1  TGTGTGTGTGTGTATGTGTGTGTGTGTGTAGGTCAGAGGTTAAGTTTGTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTATGTGTGTGTGTGTGTAGGTCAGAGGTTAAGTTTGTA  1096

seq1  GAGTGGTTTCTTTCCTTCCACTTTCAGGGGCATAGAATTC  1136
      ||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGTTTCTTTCCTTCCACTTTCAGGGGCATAGAATTC  1136

seq1: chr18_36469325_36470355
seq2: B6Ng01-158N21.g_69_1112

seq1  GAATTCTCTTCCTTTAGCAGGTTGTGGTGGTACGTGCCTGTAATCCCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCCTTTAGCAGGTTGTGGTGGTACGTGCCTGTAATCCCAAC  50

seq1  ACCTAGGTAGAGGAAGGAGGATCAGAAATTTGAAGTACACTGGGCAGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGTAGAGGAAGGAGGATCAGAAATTTGAAGTACACTGGGCAGTGG  100

seq1  TGGCGCACGCCTTTTAATCCTAGCACTTGGGAGGCAGAGGTAAGTGGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGCACGCCTTTTAATCCTAGCACTTGGGAGGCAGAGGTAAGTGGATT  150

seq1  TCTGAGTTCGAGGGCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTCGAGGGCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAG  200

seq1  GGCTATACAGAGAAATCCTGTCTCGAAAAACCAAAAAACAAACAAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATACAGAGAAATCCTGTCTCGAAAAACCAAAAAACAAACAAAAAAA  250

seq1  ACAAAAAACAAAAAAAAGAATTCTTGAGTTCAAGGCCAGCCTGTGCTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAACAAAAAAAAGAATTCTTGAGTTCAAGGCCAGCCTGTGCTGTT  300

seq1  TAAGATCCTGTCTTAAAAGGAGTGTGGGAGTAGGTAGGAAATTCTTCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATCCTGTCTTAAAAGGAGTGTGGGAGTAGGTAGGAAATTCTTCCTG  350

seq1  ATTTTAAATGAGGTTAAAATGAGGCTCAGCTACATTTAAAATAAATGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATGAGGTTAAAATGAGGCTCAGCTACATTTAAAATAAATGTAG  400

seq1  GGTCTTTAGTTAGACTCAAAAAGCAAAGTCATGGGGCTGGAAGATGGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTAGTTAGACTCAAAAAGCAAAGTCATGGGGCTGGAAGATGGCTC  450

seq1  AGTGGTTAAAAGCACTGGCTGCTCTTCCAGAGGTTCCAAGTTCAATTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTAAAAGCACTGGCTGCTCTTCCAGAGGTTCCAAGTTCAATTCCC  500

seq1  AGCACCCACATGTCTCACAGCTGTCTGTAACTCCAGTTTCAGGGGGATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCACATGTCTCACAGCTGTCTGTAACTCCAGTTTCAGGGGGATCC  550

seq1  AACACCCTCACACAGGCATACATGCCGGCAAAATACCAATTCACAT-AAA  599
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AACACCCTCACACAGGCATACATGCCGGCAAAATACCAATTCACATAAAA  600

seq1  ACAAAAAACTAACAGAAACCAGGGGCTGGAGAGTTCAGCAGTTAAGTGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAACTAACAGAAACCAGGGGCTGGAGAGTTCAGCAGTTAAGTGTG  650

seq1  ATTACTGCTCCTCTAATGGACCTGAAGTCAGTTCTCAGCACCCACGTCTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGCTCCTCTAATGGACCTGAAGTCAGTTCTCAGCACCCACGTCTA  700

seq1  GTGACTCACAGCCGGCCATCTGTGCTTCTAATTCCAAGAATCTAGTGTCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCACAGCCGGCCATCTGTGCTTCTAATTCCAAGAATCTAGTGTCC  750

seq1  TCGTCTGGTCTCTGTGGACACTACATATATGGCATATACAAGCACACATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCTGGTCTCTGTGGACACTACATATATGGCATATACAAGCACACATG  800

seq1  CC-AAAAAAAAATAACT-CCTTCTTCGGAGGGGTGACAATAAAGT-GGGG  846
      || |||||||||||||| ||||||| ||||||||||||||||||| ||||
seq2  CCAAAAAAAAAATAACTCCCTTCTTGGGAGGGGTGACAATAAAGTGGGGG  850

seq1  CAGTCGAT-GGGTTAAAGTC-TTCAGCAGCAG-CCATGTTTC-AGGCAG-  891
      |||||||| |||| |||||| ||||||||||| | ||||||| |||||| 
seq2  CAGTCGATGGGGTAAAAGTCTTTCAGCAGCAGTCAATGTTTCAAGGCAGA  900

seq1  AATGACTTAGAATGGCAAGCATGTCTACAGC-TAACAGCCAG-CCTCCAT  939
      ||||||||||||||||||||||||||||||| |||||||||| | |||||
seq2  AATGACTTAGAATGGCAAGCATGTCTACAGCTTAACAGCCAGTCTTCCAT  950

seq1  CCAGCTGGAGGGAAA-CCCACCCTGAG-CCCTCCCCCTTGCAGCTTTAGT  987
      ||||||||||||||| ||||||||||| ||||||||||| | || |||||
seq2  CCAGCTGGAGGGAAATCCCACCCTGAGTCCCTCCCCCTT-CCGC-TTAGT  998

seq1  CC-TCTCTACTCTTTTTACTGTGCAAAGAGGA--CCCTGTCTCTGAC  1031
      || | ||||||||||||||||||| |||| ||  || ||||||||||
seq2  CCTTTTCTACTCTTTTTACTGTGC-AAGAAGACTCCTTGTCTCTGAC  1044