BAC Information

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BAC

Clone NameB6Ng01-159I02
Chromosome18 (Build37)
Map Location 42,248,263 - 42,364,473
singlet/doubletdoublet
Overlap geneSh3rf2, EG435561, Plac8l1, LOC433177, Lars
Upstream geneLOC677182, LOC100041988, LOC100041997, Prelid2, Gm851
Downstream geneEG625929, LOC100042757, Rbm27, Pou4f3, LOC100042767, LOC100042027, Tcerg1, Gpr151, LOC100042037, Ppp2r2b, LOC100042046, LOC100042051, EG666594
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159I02.bB6Ng01-159I02.g
ACCDH953152DH953153
length1,1261,076
definitionDH953152|Mus musculus domesticus DNA, BAC clone: B6Ng01-159I02, 5' end.DH953153|Mus musculus domesticus DNA, BAC clone: B6Ng01-159I02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,248,263 - 42,249,402)(42,363,365 - 42,364,473)
sequence
gaattctactccagaattatggatacagctcagtggtagagtacttgctt
gcatttgaaagccctgggtttgatctccagaacttaagaacaacaacaaa
caaacaaacaaactctgtttctaaggggtcttgtttctaggggtcctgtt
tctctgactccctgaatctacacagtatggctgataaagccctctggttc
attttaagctaggggtgccttttctgtctcccaaactggagattataaat
atacccagtgaagtccatcgggctggttaatgtcctcctactttgtctgg
agttatgtgagaagacattattacagggaaagctaactgtacaaaaggtg
tgtcaggtcacctcctaagtgtttctagacccatggccttttcaaagaga
gtctctatgcatttgcaaagatacttagaaaaatagaacggtgttcttca
ctgctatcatttcaggaaacatgctcagattagaaccatcaactcggagt
atcttattttctttcctggttgtgttcctataaataaatatttgtgatcc
aggagtgtgtctgtttgtctgtctatctgtctgtctgtgtgcttgtgctg
gcgcgcgcatgtgtgtgtttccgtgtctgtctctgtgggtatgtctgcgt
gtatgttttaatcagctctaaattcatttgttgaattccataggactgaa
tgagccatcacataataattttacctcagtaggagagaagttgtaactag
ttcacggggtaattatagggcagctttctgccaggctttaaagatagact
ttgaaatgtttatttttttcacttgcctactgtcatgtgtagaaagaggt
tctagctcctgggaaacccgccagagtttaaatgagggccagctagagag
agagcacaaagagttgggtcttatcttttcgtgttcagacttctgggaca
cagatttatcctacacatgggtatgtgatctccatagagactctatagaa
ttatgacagatgcacagccacaatctcagaagtgtactccttggcaacat
tcacaatccctggaaactgcagatgtgtggattttggatctacctcaact
tactgtcagtagtggaatggaagaag
gaattcctcagcattgtgttgtcattgctttctatctgttgtcttttctc
atggaatctggtgtagttcctatttatttactcataccagctgtgagtaa
tacacagttttttaagtttggtcttagaaactgctgtaaattttggaaaa
tggatagcattagcaaagtttgaaattgacattcgtgtgagaatccacag
aagagatctaaccttgatactctccataggccctcagattgctttgatat
gtacatattgaatatgtgcgctagaaaagcagttcaattcaataccatac
ttcatagtctgtatgctgcagtagacagcaagcagcccaattagtgccaa
ttgtattgagggtgactgtggtctaggtatgggaaacactcggctcaaac
catcatttcactccacaaaggccactgggcaaatcttgatgataatgact
ttaaatcactcagacccaagccacatgtgaactaataacctggaggtgag
gctccattgcgtatcaccagtccctagggcctttcagtcgctcttatctt
ttctctaagtgcctgaaaccttgtgtagttgcagacttaaatttcaacat
ttttagtgatgagagagatcgaggataagaacagatatgaaggtcactaa
gaaagccctatgaatttattggcagtaatgaactacatggcaaaacatca
aatcaaatatgttttgtcacttagaagcccgattgagtgttaaggtttct
ttgaaatagtttaaattagatttggttgaaatgatgagggtcgactgtta
gagagctgcagcgaatgtataaaatcttctggcagaacttattactacac
tgatagcagaatacttggtgccaccgaggcacagatgaaatcgcaatagc
tgtgccatgaattgtatccatgcaataggaagccacgtgagctctgctgc
tgctgctgctgctgctgctgctgctgctgctgctcttgtttagtttcagt
tagttcaggctgtgcttgtctggggtggctgtgtaagtctctgcaaggct
ctgacactcgcagcaggttggctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_42248263_42249402
seq2: B6Ng01-159I02.b_45_1170

seq1  GAATTCTACTCCAGAATTATGGATACAGCTCAGTGGTAGAGTACTTGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACTCCAGAATTATGGATACAGCTCAGTGGTAGAGTACTTGCTT  50

seq1  GCATTTGAAAGCCCTGGGTTTGATCTCCAGAACTTAAGAACAACAACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGAAAGCCCTGGGTTTGATCTCCAGAACTTAAGAACAACAACAAA  100

seq1  CAAACAAACAAACTCTGTTTCTAAGGGGTCTTGTTTCTAGGGGTCCTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAACTCTGTTTCTAAGGGGTCTTGTTTCTAGGGGTCCTGTT  150

seq1  TCTCTGACTCCCTGAATCTACACAGTATGGCTGATAAAGCCCTCTGGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGACTCCCTGAATCTACACAGTATGGCTGATAAAGCCCTCTGGTTC  200

seq1  ATTTTAAGCTAGGGGTGCCTTTTCTGTCTCCCAAACTGGAGATTATAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAGCTAGGGGTGCCTTTTCTGTCTCCCAAACTGGAGATTATAAAT  250

seq1  ATACCCAGTGAAGTCCATCGGGCTGGTTAATGTCCTCCTACTTTGTCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCAGTGAAGTCCATCGGGCTGGTTAATGTCCTCCTACTTTGTCTGG  300

seq1  AGTTATGTGAGAAGACATTATTACAGGGAAAGCTAACTGTACAAAAGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGTGAGAAGACATTATTACAGGGAAAGCTAACTGTACAAAAGGTG  350

seq1  TGTCAGGTCACCTCCTAAGTGTTTCTAGACCCATGGCCTTTTCAAAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGTCACCTCCTAAGTGTTTCTAGACCCATGGCCTTTTCAAAGAGA  400

seq1  GTCTCTATGCATTTGCAAAGATACTTAGAAAAATAGAACGGTGTTCTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTATGCATTTGCAAAGATACTTAGAAAAATAGAACGGTGTTCTTCA  450

seq1  CTGCTATCATTTCAGGAAACATGCTCAGATTAGAACCATCAACTCGGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATCATTTCAGGAAACATGCTCAGATTAGAACCATCAACTCGGAGT  500

seq1  ATCTTATTTTCTTTCCTGGTTGTGTTCCTATAAATAAATATTTGTGATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATTTTCTTTCCTGGTTGTGTTCCTATAAATAAATATTTGTGATCC  550

seq1  AGGAGTGTGTCTGTTTGTCTGTCTATCTGTCTGTCTGTGTGCTTGTGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGTGTCTGTTTGTCTGTCTATCTGTCTGTCTGTGTGCTTGTGCTG  600

seq1  GCGCGCGCATGTGTGTGTTTCCGTGTCTGTCTCTGTGGGTATGTCTGCGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGCGCATGTGTGTGTTTCCGTGTCTGTCTCTGTGGGTATGTCTGCGT  650

seq1  GTATGTTTTAATCAGCTCTAAATTCATTTGTTGAATTCCATAGGACTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTTTTAATCAGCTCTAAATTCATTTGTTGAATTCCATAGGACTGAA  700

seq1  TGAGCCATCACATAATAATTTTACCTCAGTAGGAGAGAAGTTGTAACTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATCACATAATAATTTTACCTCAGTAGGAGAGAAGTTGTAACTAG  750

seq1  TTCACGGGGTAATTATAGGGCAGCTTTCTGCCAGGCTTTAAAGATAGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACGGGGTAATTATAGGGCAGCTTTCTGCCAGGCTTTAAAGATAGACT  800

seq1  TTGAAATGTTTATTTTTTTCACTTGCCTACTGTCATGTGTAGAAAGAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATGTTTATTTTTTTCACTTGCCTACTGTCATGTGTAGAAAGAGGT  850

seq1  TCCAGCTCCTGGGATACCCGCCAGAG-TTAAATGAGGGCCAGCTAGAGAG  899
      || ||||||||||| ||||||||||| |||||||||||||||||||||||
seq2  TCTAGCTCCTGGGAAACCCGCCAGAGTTTAAATGAGGGCCAGCTAGAGAG  900

seq1  AGAGGCACAAAGAGTTGGGTCTTATCTTTCCGTGTTCAGACTTCTGGGAC  949
      ||| ||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGA-GCACAAAGAGTTGGGTCTTATCTTTTCGTGTTCAGACTTCTGGGAC  949

seq1  ACAGATTTATCCTACCACATTGGTATGTTGATCTCCATAGAGACCTCAAT  999
      |||||||||||||| ||||| |||||| ||||||||||||||| ||| ||
seq2  ACAGATTTATCCTA-CACATGGGTATG-TGATCTCCATAGAGA-CTCTAT  996

seq1  AGAATTATGACAAGATGCACAGCACACATCTTCAGAAGTGTAACCCCTGG  1049
      ||||||||||| ||||||||||| ||||   |||||||||||  || |||
seq2  AGAATTATGAC-AGATGCACAGC-CACAATCTCAGAAGTGTACTCCTTGG  1044

seq1  GCCAACATTCAC-ATCCCTGGAAACTGGCCAGATGTGTGGATTTTTGGAT  1098
        |||||||||| ||||||||||||||  |||||||||||| ||||||||
seq2  --CAACATTCACAATCCCTGGAAACTG--CAGATGTGTGGA-TTTTGGAT  1089

seq1  CCCACCTCAAACCTACTGTGTCAGTAAGTGGATGGGAAGAAG  1140
       | ||||| ||| |||  ||||||| ||||||  ||||||||
seq2  -CTACCTC-AACTTAC--TGTCAGT-AGTGGAATGGAAGAAG  1126

seq1: chr18_42363365_42364473
seq2: B6Ng01-159I02.g_68_1143 (reverse)

seq1  AAAAGCAAACCCTGCCTGCGAGTGCTCAGAGCCTCTGCAGAGACCTTACA  50
      |||||| || |||| ||||||||| ||||||||| |||||||| ||||||
seq2  AAAAGCCAA-CCTG-CTGCGAGTG-TCAGAGCCT-TGCAGAGA-CTTACA  45

seq1  CAGCCCACCCCAAGACAAAGCACAGGCCCTGAAAACTAACCTGAAAACTA  100
      ||| ||||||| |||| ||||||||  ||||  |||||| ||| ||||| 
seq2  CAG-CCACCCC-AGAC-AAGCACAG--CCTG--AACTAA-CTG-AAACT-  85

seq1  AAACAAGAGGCAGGCAGGCAGGCAGGCAGGCAGGCAGGCAGGCAGGCAGG  150
      |||||||| ||| ||| ||| ||| ||| ||| ||| ||| ||| ||| |
seq2  AAACAAGA-GCA-GCA-GCA-GCA-GCA-GCA-GCA-GCA-GCA-GCA-G  124

seq1  CAGGCAGGCAGAGCCTCACCGTGGGCTTCCTATTTGCATGGATACAATTC  200
      || ||| |||||| |||| ||| ||||||||| |||||||||||||||||
seq2  CA-GCA-GCAGAG-CTCA-CGT-GGCTTCCTA-TTGCATGGATACAATTC  168

seq1  ATGGCAACAGCTATTGCGATTTCATCTGTGCCTCGGTGGCACCAAGTATT  250
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGC-ACAGCTATTGCGATTTCATCTGTGCCTCGGTGGCACCAAGTATT  217

seq1  CTGCTATCAGTGTAGTAATAAGTTCTGCCAGAAGATTTTATACATTCGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATCAGTGTAGTAATAAGTTCTGCCAGAAGATTTTATACATTCGCT  267

seq1  GCAGCTCTCTAACAGTCGACCCTCATCATTTCAACCAAATCTAATTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTCTCTAACAGTCGACCCTCATCATTTCAACCAAATCTAATTTAAA  317

seq1  CTATTTCAAAGAAACCTTAACACTCAATCGGGCTTCTAAGTGACAAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCAAAGAAACCTTAACACTCAATCGGGCTTCTAAGTGACAAAACA  367

seq1  TATTTGATTTGATGTTTTGCCATGTAGTTCATTACTGCCAATAAATTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGATTTGATGTTTTGCCATGTAGTTCATTACTGCCAATAAATTCAT  417

seq1  AGGGCTTTCTTAGTGACCTTCATATCTGTTCTTATCCTCGATCTCTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTTCTTAGTGACCTTCATATCTGTTCTTATCCTCGATCTCTCTCA  467

seq1  TCACTAAAAATGTTGAAATTTAAGTCTGCAACTACACAAGGTTTCAGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAAAAATGTTGAAATTTAAGTCTGCAACTACACAAGGTTTCAGGCA  517

seq1  CTTAGAGAAAAGATAAGAGCGACTGAAAGGCCCTAGGGACTGGTGATACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGAAAAGATAAGAGCGACTGAAAGGCCCTAGGGACTGGTGATACG  567

seq1  CAATGGAGCCTCACCTCCAGGTTATTAGTTCACATGTGGCTTGGGTCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAGCCTCACCTCCAGGTTATTAGTTCACATGTGGCTTGGGTCTGA  617

seq1  GTGATTTAAAGTCATTATCATCAAGATTTGCCCAGTGGCCTTTGTGGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTAAAGTCATTATCATCAAGATTTGCCCAGTGGCCTTTGTGGAGT  667

seq1  GAAATGATGGTTTGAGCCGAGTGTTTCCCATACCTAGACCACAGTCACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGATGGTTTGAGCCGAGTGTTTCCCATACCTAGACCACAGTCACCC  717

seq1  TCAATACAATTGGCACTAATTGGGCTGCTTGCTGTCTACTGCAGCATACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATACAATTGGCACTAATTGGGCTGCTTGCTGTCTACTGCAGCATACA  767

seq1  GACTATGAAGTATGGTATTGAATTGAACTGCTTTTCTAGCGCACATATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATGAAGTATGGTATTGAATTGAACTGCTTTTCTAGCGCACATATTC  817

seq1  AATATGTACATATCAAAGCAATCTGAGGGCCTATGGAGAGTATCAAGGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTACATATCAAAGCAATCTGAGGGCCTATGGAGAGTATCAAGGTT  867

seq1  AGATCTCTTCTGTGGATTCTCACACGAATGTCAATTTCAAACTTTGCTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTCTTCTGTGGATTCTCACACGAATGTCAATTTCAAACTTTGCTAA  917

seq1  TGCTATCCATTTTCCAAAATTTACAGCAGTTTCTAAGACCAAACTTAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATCCATTTTCCAAAATTTACAGCAGTTTCTAAGACCAAACTTAAAA  967

seq1  AACTGTGTATTACTCACAGCTGGTATGAGTAAATAAATAGGAACTACACC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGTATTACTCACAGCTGGTATGAGTAAATAAATAGGAACTACACC  1017

seq1  AGATTCCATGAGAAAAGACAACAGATAGAAAGCAATGACAACACAATGCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCATGAGAAAAGACAACAGATAGAAAGCAATGACAACACAATGCT  1067

seq1  GAGGAATTC  1109
      |||||||||
seq2  GAGGAATTC  1076