BAC Information

Click to search

BAC

Clone NameB6Ng01-159N15
Chromosome16 (Build37)18 (Build37)
Map Location 23,430,914 - 23,431,78956,807,016 - 56,807,229
singlet/doubletsingletsinglet
Overlap geneRtp1
Upstream geneEtv5, Dgkg, LOC671242, LOC666459, Crygs, Tbccd1, Dnajb11, Ahsg, Fetub, Hrg, Kng2, LOC624311, LOC666486, LOC666489, Kng1, LOC666493, Eif4a2, Rfc4, Adipoq, LOC100043541, EG625835, BC106179, St6gal1
Downstream geneMasp1, LOC100043018, Rtp4, EG625969, LOC100043023, Sst, Rtp2, Bcl6, EG433009, LOC666580, LOC100043564, 1110054M08Rik, Lpp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159N15.bB6Ng01-159N15.g
ACCDH953395DH953396
length874134
definitionDH953395|Mus musculus domesticus DNA, BAC clone: B6Ng01-159N15, 5' end.DH953396|Mus musculus domesticus DNA, BAC clone: B6Ng01-159N15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(23,430,914 - 23,431,789)(56,807,016 - 56,807,229)
sequence
gaattcatcagaattgggatgagggacaaggcctgaaggaaccaggctga
agggagactcggactctggaaagcaactagggagcaaaccattactagat
gcccgatggcaagtctgggagactgctcttgtcccttgggcactcacata
gagcaaggaggatggcgtcctggggaaactaatggaccctggggactgtc
aacacaccgccctacctccgggctctgtttttgtcagcatccacatctcc
tcaccctttcctggcctgtttcctccctccacatgaccctctcttctttt
tctttccaccgctggcaggttccactgttcctggtgctggcacacctggc
agtcaccccatgtagtcatcctcttccacatgtacctggacaaggctcag
cgcgctggttcggtgcgcatgcgtgtgttcaagcagctctgctacgagtg
cggtacagcacggctggatgagtccagcatgctggaggagaacatcgaaa
gcctggtggacaacctcatcaccagtttgcgagagcagtgctacggggag
cgtggtggccactaccgcatccatgtggccagccggcaggacaaccggcg
acaccgcggagagttctgcgaggcctgccaggaaggcatcgtgcactgga
agcccagtgagaagctgctggaggaggaggcgaccacctacaccttctcc
cgtgctcccagccccaccaaaccgcagctgaaacaggctcagctgcaact
tctgctccattccctggtgcttattttgggccacggttttgatgctcatc
atctacctgcaattctccttccgtacttctgtctaagcttggggtgggga
gtcagttggtgggaaggggtgagg
aaacactcaagaggcagaggcaggcagatctgtatgagctagaaatcagc
ctggtccacacattgagttcaggatggccagggttgcatagtgagactct
taagaagaagggagaaaggaaggaaggaaggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_23430914_23431789
seq2: B6Ng01-159N15.b_45_918

seq1  GAATTCATCAGAATTGGGATGAGGGACAAGGCCTGAAGGAACCAGGCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAGAATTGGGATGAGGGACAAGGCCTGAAGGAACCAGGCTGA  50

seq1  AGGGAGACTCGGACTCTGGAAAGCAACTAGGGAGCAAACCATTACTAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGACTCGGACTCTGGAAAGCAACTAGGGAGCAAACCATTACTAGAT  100

seq1  GCCCGATGGCAAGTCTGGGAGACTGCTCTTGTCCCTTGGGCACTCACATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGATGGCAAGTCTGGGAGACTGCTCTTGTCCCTTGGGCACTCACATA  150

seq1  GAGCAAGGAGGATGGCGTCCTGGGGAAACTAATGGACCCTGGGGACTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGGAGGATGGCGTCCTGGGGAAACTAATGGACCCTGGGGACTGTC  200

seq1  AACACACCGCCCTACCTCCGGGCTCTGTTTTTGTCAGCATCCACATCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACCGCCCTACCTCCGGGCTCTGTTTTTGTCAGCATCCACATCTCC  250

seq1  TCACCCTTTCCTGGCCTGTTTCCTCCCTCCACATGACCCTCTCTTCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTTTCCTGGCCTGTTTCCTCCCTCCACATGACCCTCTCTTCTTTT  300

seq1  TCTTTCCACCGCTGGCAGGTTCCACTGTTCCTGGTGCTGGCACACCTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCACCGCTGGCAGGTTCCACTGTTCCTGGTGCTGGCACACCTGGC  350

seq1  AGTCACCCCATGTAGTCATCCTCTTCCACATGTACCTGGACAAGGCTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACCCCATGTAGTCATCCTCTTCCACATGTACCTGGACAAGGCTCAG  400

seq1  CGCGCTGGTTCGGTGCGCATGCGTGTGTTCAAGCAGCTCTGCTACGAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGCTGGTTCGGTGCGCATGCGTGTGTTCAAGCAGCTCTGCTACGAGTG  450

seq1  CGGTACAGCACGGCTGGATGAGTCCAGCATGCTGGAGGAGAACATCGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTACAGCACGGCTGGATGAGTCCAGCATGCTGGAGGAGAACATCGAAA  500

seq1  GCCTGGTGGACAACCTCATCACCAGTTTGCGAGAGCAGTGCTACGGGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTGGACAACCTCATCACCAGTTTGCGAGAGCAGTGCTACGGGGAG  550

seq1  CGTGGTGGCCACTACCGCATCCATGTGGCCAGCCGGCAGGACAACCGGCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGTGGCCACTACCGCATCCATGTGGCCAGCCGGCAGGACAACCGGCG  600

seq1  ACACCGCGGAGAGTTCTGCGAGGCCTGCCAGGAAGGCATCGTGCACTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCGCGGAGAGTTCTGCGAGGCCTGCCAGGAAGGCATCGTGCACTGGA  650

seq1  AGCCCAGTGAGAAGCTGCTGGAGGAGGAGGCGACCACCTACACCTTCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGTGAGAAGCTGCTGGAGGAGGAGGCGACCACCTACACCTTCTCC  700

seq1  CGTGCTCCCAGCCCCACCAAACCGCAGGCTGAAACAGGCTCAGGCTGCAA  750
      |||||||||||||||||||||||||| ||||||||||||||| |||||||
seq2  CGTGCTCCCAGCCCCACCAAACCGCA-GCTGAAACAGGCTCA-GCTGCAA  748

seq1  CTTCTGCTCCATTCCCTGGTGCTTATTTTGGGCCACGGTTTTGATGCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCTCCATTCCCTGGTGCTTATTTTGGGCCACGGTTTTGATGCTCA  798

seq1  TCATCTACCTGCAATTCTCCTTCCGTACTTCTGTCTAAGCTTGGGGTGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTACCTGCAATTCTCCTTCCGTACTTCTGTCTAAGCTTGGGGTGGG  848

seq1  GAGTCAGTTGGTGGGAAGGGGTGAGG  876
      ||||||||||||||||||||||||||
seq2  GAGTCAGTTGGTGGGAAGGGGTGAGG  874

seq1: chr18_56807016_56807229
seq2: B6Ng01-159N15.g_82_205 (reverse)

seq1  CTTCCTTCCTTCCTTCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  50
                                                        
seq2  --------------------------------------------------  0

seq1  CTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCTCT  100
                              || ||| ||| ||| ||| ||||   
seq2  ------------------------CTTCCTTCCTTCCTTCCTTTCTC---  23

seq1  CTCTTTCTTTCTTTCTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCT  150
                | ||||| | ||||    || || || || | ||||||| 
seq2  ----------CCTTCTTCTTAAGA----GTCTCACTATGCAACCCTGGCC  59

seq1  GTCCTGGAACTGACTTTGTAGACCAGGCTGGCCTCGAACTC--AGAAATC  198
       |||| ||||| | | ||| ||||||||||   || | |||  | | |||
seq2  ATCCT-GAACTCAATGTGTGGACCAGGCTGATTTCTAGCTCATACAGATC  108

seq1  TGCCTGCCTCTGCCTC  214
      ||||||||||||||||
seq2  TGCCTGCCTCTGCCTC  124