BAC Information

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BAC

Clone NameB6Ng01-160B09
Chromosome18 (Build37)
Map Location 84,141,653 - 84,308,959
singlet/doubletdoublet
Overlap geneTshz1, Zadh2, LOC669856
Upstream geneZfp516, LOC100041001, 4921531P14Rik, LOC665284
Downstream geneZfp407, Cndp1, EG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik, Cyb5, Fbxo15, 1700034H14Rik, LOC100039765
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160B09.bB6Ng01-160B09.g
ACCDH953555DH953556
length1,1451,065
definitionDH953555|Mus musculus domesticus DNA, BAC clone: B6Ng01-160B09, 5' end.DH953556|Mus musculus domesticus DNA, BAC clone: B6Ng01-160B09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,141,653 - 84,142,822)(84,307,886 - 84,308,959)
sequence
gaattcattaaggtaaagtctaaagaaagaccgggagttaaaatgcctgc
gtggctggggataatctcagcaggtagatttcaacagtttgcagaggact
ctgaacattctttccggtattagcagagtggccaacaccctttcggactg
gggctggtattcagcagctctgcggttctctttcacatggtgtccagaac
tcaagttcagataaggtctatagagagagaagaaaataatagattacagt
tgccagagctttgggacatggaagctagtcacaccaggcaagtcatccaa
ggaggtctttctataaaaaggaccacaggacacttttcaaggattacaca
gactggcttcatccatttttaccctttccttgctaggaggaacagaacac
ttcttccttttgctggttgagtctacctcctatacccttaacacagcacc
atgggccataccaggatgtctactcggacgtttcagggatctagtatcac
aattaggaaggtattgaagtctgttctatttttatcgacacaaagctcca
tagagatgcgcttctatggtctttctagcaatgcagagagacttcatcct
ctgcagactgcaacctacacggaggtccttcagggatctggtcaatgttc
tcaatgaatcatgagaatgaaccatggcctatgtgtaaaccaggaagtgc
ttcatgtcctccagctgcctccttgcgtgccccattgaggttcaagataa
caaacaaaaaaaagatcccagcctccaatcaaccacactgtcaagacaag
tagttgtacgtgattccctatttcctggaggcagtcccaagcaggcctga
ctatggcatggagcggctgagtctccaaatccaccaaggagggagagcca
gactctggaagctggcattcccatctccttggcagcatctgctctcctaa
gcatttcaatgtctgtgtgtctatgttcatgaaatagacataaagcactc
tcagttgttgaagagcaaaggagtgactgtgtgactatttcttaatacac
tgtttaacattcactaaacctcaatctttaaacttgcaattgctccccct
agcctaccagcagcgaagaacacacagaggcataggatacagcct
gaattctaggttggcaattaggctttttatttagcactttaaagatggta
attaattccttgttttctggattccataatttttgttgaagaagcaactg
tcagtgatagttttgcaactttgaacataaagcaccatctatgcctgcct
gacacttctctctgcctgactctcagctgtgagaactctagggggtgctg
agctgtgggtatcctgcacaggttctcaaggcgtgtctggtctacacaga
cgtaccccttccatcagtttcagaaagcagtcacagttccttctaatgct
gcccttgcccttcctccctctcccagacggtcgactacgcaagatgtctt
ttgttctctttccatgtgttcagcgtggtgctgtctgctgtagactccgt
tttctatttgttggtcctctgcattactgatcctcctttctctccagacc
cagtcttcatctggtccatcagttggtttgatttttctcctttacctcta
tagtgttaactcttttacgtggattctggttctttgataaaacaaacaaa
acaaaacaacaagaacaacaaaaaccctctacactgtcatctctttcttc
gactgcatcatttcaaagaacacacctgtcatgaagtgtgctcatctgtt
tgtctgttcctgttttcttctgtctcttggcatagttctcctttttctct
gagcaacaaatatggcggatgagccactgtggggttgccctctctggtag
cgagagtggggaggtcacaccttcctccagtctgtgactgagcacttcca
gctggccctgcaggttctcaagtctcaaattttcttacttctctctcgtt
tccagctggacctagcatcaccttctatgtctgtctgtctgtttcccctc
cctctctctcctgttcggtccttatctctccccctctctgtctctctctt
tcgccctctatctcatacctgtgcatcaatatattatgtatcttcactac
taccaagtctctctgttctacctatattgcctctgccatactgtctataa
gtatattggcatctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_84141653_84142822
seq2: B6Ng01-160B09.b_43_1187

seq1  GAATTCATTAAGGTAAAGTCTAAAGAAAGACCGGGAGTTAAAATGCCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAAGGTAAAGTCTAAAGAAAGACCGGGAGTTAAAATGCCTGC  50

seq1  GTGGCTGGGGATAATCTCAGCAGGTAGATTTCAACAGTTTGCAGAGGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGGGGATAATCTCAGCAGGTAGATTTCAACAGTTTGCAGAGGACT  100

seq1  CTGAACATTCTTTCCGGTATTAGCAGAGTGGCCAACACCCTTTCGGACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACATTCTTTCCGGTATTAGCAGAGTGGCCAACACCCTTTCGGACTG  150

seq1  GGGCTGGTATTCAGCAGCTCTGCGGTTCTCTTTCACATGGTGTCCAGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGTATTCAGCAGCTCTGCGGTTCTCTTTCACATGGTGTCCAGAAC  200

seq1  TCAAGTTCAGATAAGGTCTATAGAGAGAGAAGAAAATAATAGATTACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTCAGATAAGGTCTATAGAGAGAGAAGAAAATAATAGATTACAGT  250

seq1  TGCCAGAGCTTTGGGACATGGAAGCTAGTCACACCAGGCAAGTCATCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGAGCTTTGGGACATGGAAGCTAGTCACACCAGGCAAGTCATCCAA  300

seq1  GGAGGTCTTTCTATAAAAAGGACCACAGGACACTTTTCAAGGATTACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTCTTTCTATAAAAAGGACCACAGGACACTTTTCAAGGATTACACA  350

seq1  GACTGGCTTCATCCATTTTTACCCTTTCCTTGCTAGGAGGAACAGAACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGCTTCATCCATTTTTACCCTTTCCTTGCTAGGAGGAACAGAACAC  400

seq1  TTCTTCCTTTTGCTGGTTGAGTCTACCTCCTATACCCTTAACACAGCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTTTTGCTGGTTGAGTCTACCTCCTATACCCTTAACACAGCACC  450

seq1  ATGGGCCATACCAGGATGTCTACTCGGACGTTTCAGGGATCTAGTATCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCCATACCAGGATGTCTACTCGGACGTTTCAGGGATCTAGTATCAC  500

seq1  AATTAGGAAGGTATTGAAGTCTGTTCTATTTTTATCGACACAAAGCTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGGAAGGTATTGAAGTCTGTTCTATTTTTATCGACACAAAGCTCCA  550

seq1  TAGAGATGCGCTTCTATGGTCTTTCTAGCAATGCAGAGAGACTTCATCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATGCGCTTCTATGGTCTTTCTAGCAATGCAGAGAGACTTCATCCT  600

seq1  CTGCAGACTGCAACCTACACGGAGGTCCTTCAGGGATCTGGTCAATGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGACTGCAACCTACACGGAGGTCCTTCAGGGATCTGGTCAATGTTC  650

seq1  TCAATGAATCATGAGAATGAACCATGGCCTATGTGTAAACCAGGAAGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGAATCATGAGAATGAACCATGGCCTATGTGTAAACCAGGAAGTGC  700

seq1  TTCATGTCCTCCAGCTGCCTCCTTGCGTGCCCCATTGAGGTTCAAGATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTCCTCCAGCTGCCTCCTTGCGTGCCCCATTGAGGTTCAAGATAA  750

seq1  CAAACAAAAAAAAGATCCCAGCCTCCAATCAACCACACTGTCAAGACAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAAAAAAAGATCCCAGCCTCCAATCAACCACACTGTCAAGACAAG  800

seq1  TAGTTGTACGTGATTCCCTATTTCCTGGAGGCAGTCCCAAGCAGGCCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGTACGTGATTCCCTATTTCCTGGAGGCAGTCCCAAGCAGGCCTGA  850

seq1  CTATGGCATGGAGCGGCTGAGTCTCCAAATCCACCAAGGAGGGAGAAGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTATGGCATGGAGCGGCTGAGTCTCCAAATCCACCAAGGAGGGAG-AGCC  899

seq1  AGACTCTGGAAGCTGGCATTCCCATCTCCTTGGCCAGCATCTGCCTCTCC  950
      ||||||||||||||||||||||||||||||||| ||||||||| |||| |
seq2  AGACTCTGGAAGCTGGCATTCCCATCTCCTTGG-CAGCATCTG-CTCT-C  946

seq1  CTAAGCATTTCAATGTCTGTGTGTCTATTGTTCCATGAAATAGGAACAAT  1000
      ||||||||||||||||||||||||||| |||| ||||||||||  || ||
seq2  CTAAGCATTTCAATGTCTGTGTGTCTA-TGTT-CATGAAATAG--AC-AT  991

seq1  AAAGCCACTCTCAGTTGTTGGAAGAGGCCAAAGGAGTGACCTGTGTGAAC  1050
      |||| |||||||||||||| ||||||  ||||||||||| ||||||| ||
seq2  AAAG-CACTCTCAGTTGTT-GAAGAG--CAAAGGAGTGA-CTGTGTG-AC  1035

seq1  TATTTCCTAAATACACTGTTTTAACCAATTCAACTTACACTCAATTCTAT  1100
      ||||| || ||||||||| ||||||  |||| ||| |  ||||| ||| |
seq2  TATTT-CTTAATACACTG-TTTAAC--ATTC-ACTAAACCTCAA-TCT-T  1078

seq1  TAAAACTGCAGTGGCTCCCCCTAGCCTACCAAGCAGCGAAGAACACACAG  1150
      ||||  |||| | ||||||||||||||||| |||||||||||||||||||
seq2  TAAACTTGCAATTGCTCCCCCTAGCCTACC-AGCAGCGAAGAACACACAG  1127

seq1  AGGGCATAGAAATACAGCCT  1170
      | |||||||  |||||||||
seq2  A-GGCATAG-GATACAGCCT  1145

seq1: chr18_84307886_84308959
seq2: B6Ng01-160B09.g_68_1132 (reverse)

seq1  AAGATGGCCAAATATAC-TATAGACAGATAGACAGAGGCATATATAGGTA  49
      ||||||  | ||||||| |||||||||   | |||||||| |||||||||
seq2  AAGATG--CCAATATACTTATAGACAGTATGGCAGAGGCA-ATATAGGTA  47

seq1  GAACAGAGAGACTGTGGGTAGTAGTGAGGATACATAATATATGGATGCAC  99
      ||||||||||||  | ||||||||||| |||||||||||||| |||||||
seq2  GAACAGAGAGAC--TTGGTAGTAGTGAAGATACATAATATATTGATGCAC  95

seq1  AGGTATGAGATAGAGGGCGAAAGAGAGAGACAGAGAGGGAGAGAGATAGA  149
      ||||||||||||||||||||||||||||||||||||||| ||||||||  
seq2  AGGTATGAGATAGAGGGCGAAAGAGAGAGACAGAGAGGGGGAGAGATAAG  145

seq1  GACAGAAACAGAGAGAGAGAGAAGGGGGAAACAGACAGACAGACATAGAG  199
      ||| |||   ||||||||| ||  ||||||||||||||||||||||||| 
seq2  GACCGAACAGGAGAGAGAGGGA--GGGGAAACAGACAGACAGACATAGAA  193

seq1  GCTGATGCTAGGTACAGCTTGGAAACAGAGAGAGAAGTAAGAAAATTCTG  249
      | ||||||||||| |||| ||||||| |||||||||||||||||||| ||
seq2  GGTGATGCTAGGTCCAGC-TGGAAAC-GAGAGAGAAGTAAGAAAATT-TG  240

seq1  AGACTTGAGAACCTGCAGGGCCAGCTGGAAGTGCTCAGTCACAGACTGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGAGAACCTGCAGGGCCAGCTGGAAGTGCTCAGTCACAGACTGGA  290

seq1  GGAAGGTGTGACCTCCCCACTCTCGCTACCAGAGAGGGCAAACCCACAGT  349
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGAAGGTGTGACCTCCCCACTCTCGCTACCAGAGAGGGCAACCCCACAGT  340

seq1  GGCTCATCCGCCATATTTGTTGCTCAGAGAAAAAGGAGAACTATGCCAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCATCCGCCATATTTGTTGCTCAGAGAAAAAGGAGAACTATGCCAAG  390

seq1  AGACAGAAGAAAACAGGAACAGACAAACAGATGAGCACACTTCATGACAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAAGAAAACAGGAACAGACAAACAGATGAGCACACTTCATGACAG  440

seq1  GTGTGTTCTTTGAAATGATGCAGTCGAAGAAAGAGATGACAGTGTAGAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTCTTTGAAATGATGCAGTCGAAGAAAGAGATGACAGTGTAGAGG  490

seq1  GTTTTTGTTGTTCTTGTTGTTTTGTTTTGTTTGTTTTATCAAAGAACCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTTGTTCTTGTTGTTTTGTTTTGTTTGTTTTATCAAAGAACCAG  540

seq1  AATCCACGTAAAAGAGTTAACACTATAGAGGTAAAGGAGAAAAATCAAAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCACGTAAAAGAGTTAACACTATAGAGGTAAAGGAGAAAAATCAAAC  590

seq1  CAACTGATGGACCAGATGAAGACTGGGTCTGGAGAGAAAGGAGGATCAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGATGGACCAGATGAAGACTGGGTCTGGAGAGAAAGGAGGATCAGT  640

seq1  AATGCAGAGGACCAACAAATAGAAAACGGAGTCTACAGCAGACAGCACCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGAGGACCAACAAATAGAAAACGGAGTCTACAGCAGACAGCACCA  690

seq1  CGCTGAACACATGGAAAGAGAACAAAAGACATCTTGCGTAGTCGACCGTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGAACACATGGAAAGAGAACAAAAGACATCTTGCGTAGTCGACCGTC  740

seq1  TGGGAGAGGGAGGAAGGGCAAGGGCAGCATTAGAAGGAACTGTGACTGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGAGGGAGGAAGGGCAAGGGCAGCATTAGAAGGAACTGTGACTGCT  790

seq1  TTCTGAAACTGATGGAAGGGGTACGTCTGTGTAGACCAGACACGCCTTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAACTGATGGAAGGGGTACGTCTGTGTAGACCAGACACGCCTTGA  840

seq1  GAACCTGTGCAGGATACCCACAGCTCAGCACCCCCTAGAGTTCTCACAGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGTGCAGGATACCCACAGCTCAGCACCCCCTAGAGTTCTCACAGC  890

seq1  TGAGAGTCAGGCAGAGAGAAGTGTCAGGCAGGCATAGATGGTGCTTTATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTCAGGCAGAGAGAAGTGTCAGGCAGGCATAGATGGTGCTTTATG  940

seq1  TTCAAAGTTGCAAAACTATCACTGACAGTTGCTTCTTCAACAAAAATTAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGTTGCAAAACTATCACTGACAGTTGCTTCTTCAACAAAAATTAT  990

seq1  GGAATCCAGAAAACAAGGAATTAATTACCATCTTTAAAGTGCTAAATAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCCAGAAAACAAGGAATTAATTACCATCTTTAAAGTGCTAAATAAA  1040

seq1  AAGCCTAATTGCCAACCTAGAATTC  1074
      |||||||||||||||||||||||||
seq2  AAGCCTAATTGCCAACCTAGAATTC  1065