MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-160H08
Chromosome	18 (Build37)
Map Location	20,607,144 - 20,608,244
singlet/doublet	singlet
Overlap gene	Dsg4
Upstream gene	LOC665629, Dsc3, Dsc2, Dsc1, Dsg1c, Dsg1a, Dsg1b
Downstream gene	LOC435558, Dsg3, Tpi-rs10, Dsg2, Ttr, LOC100040823, B4galt6, D030074E01Rik, Rnf125, Rnf138, Mep1b, EG622978, Gm944, LOC665722
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC665629 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665629
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Dsc3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13507 MGI:1194993
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dsc2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13506 MGI:103221
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dsc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13505 MGI:109173
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dsg1c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:211924 MGI:2664358
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dsg1a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13510 MGI:94930
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 34 ESTs, 8 Proteins

name	Dsg1b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:225256 MGI:2664357
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dsg4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16769 MGI:2661061
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC435558 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:435558
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 34 Proteins pseudo : _no_value

name	Dsg3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13512 MGI:99499
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tpi-rs10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:665674 MGI:98798
definition	gene_synonym : Tpi-10 note : triosephosphate isomerase related sequence 10 pseudo : _no_value

name	Dsg2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13511 MGI:1196466
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ttr (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22139 MGI:98865
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040823 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040823
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 708 ESTs, 6 Proteins

name	B4galt6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56386 MGI:1928380
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	D030074E01Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75964 MGI:2443008
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rnf125 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67664 MGI:1914914
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rnf138 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56515 MGI:1929211
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Mep1b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17288 MGI:96964
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG622978 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:622978 MGI:3647253
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 363 ESTs, 8 Proteins

name	Gm944 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381126 MGI:2685790
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665722 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665722
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 3 Proteins pseudo : _no_value

name	Dsc3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133778946 GeneID:13507 MGI:1194993
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : desmocollin 3 transcript_id : NM_007882.3

name	Dsc2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142348049 GeneID:13506 MGI:103221
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : desmocollin 2 transcript_id : NM_013505.3

name	Dsc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142362408 GeneID:13505 MGI:109173
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : desmocollin 1 transcript_id : NM_013504.3

name	Dsg1c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:32129204 GeneID:211924 MGI:2664358
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : desmoglein 1 gamma transcript_id : NM_181680.1

name	Dsg1a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94404300 GeneID:13510 MGI:94930
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 34 ESTs, 7 Proteins product : desmoglein 1 alpha, transcript variant 1 transcript_id : XM_484705.3

name	Dsg1a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94404301 GeneID:13510 MGI:94930
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 31 ESTs, 3 Proteins product : desmoglein 1 alpha, transcript variant 2 transcript_id : XM_980693.1

name	Dsg1b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:32129200 GeneID:225256 MGI:2664357
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : desmoglein 1 beta transcript_id : NM_181682.1

name	Dsg4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328476 GeneID:16769 MGI:2661061
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : desmoglein 4 transcript_id : NM_181564.2

name	Dsg3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142376201 GeneID:13512 MGI:99499
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : desmoglein 3 transcript_id : NM_030596.3

name	Dsg2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22779878 GeneID:13511 MGI:1196466
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : desmoglein 2 transcript_id : NM_007883.1

name	Ttr (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802400 GeneID:22139 MGI:98865
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transthyretin transcript_id : NM_013697.2

name	LOC100040823 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149269683 GeneID:100040823
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 708 ESTs, 6 Proteins product : similar to ribosomal protein L35 transcript_id : XM_001475468.1

name	B4galt6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:9790036 GeneID:56386 MGI:1928380
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6 transcript_id : NM_019737.1

name	D030074E01Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119964701 GeneID:75964 MGI:2443008
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA D030074E01 gene transcript_id : NM_029491.2

name	Rnf125 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142350216 GeneID:67664 MGI:1914914
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ring finger protein 125 transcript_id : NM_026301.2

name	Rnf138 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46488940 GeneID:56515 MGI:1929211
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ring finger protein 138 transcript_id : NM_207623.1

name	Rnf138 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46488938 GeneID:56515 MGI:1929211
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ring finger protein 138 transcript_id : NM_019706.2

name	Mep1b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6678861 GeneID:17288 MGI:96964
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : meprin 1 beta transcript_id : NM_008586.1

name	EG622978 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94404305 GeneID:622978 MGI:3647253
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 363 ESTs, 8 Proteins product : predicted gene, EG622978 transcript_id : XM_888302.2

name	Gm944 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:134288887 GeneID:381126 MGI:2685790
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gene model 944, (NCBI) transcript_id : NM_001033445.2

name	Dsc3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:133778947 GeneID:13507 MGI:1194993
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0030057 - desmosome [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0001701 - embryonic development (sensu Mammalia) [Evidence IMP]; GO:0007156 - homophilic cell adhesion [Evidence IEA] codon_start : 1 product : desmocollin 3 protein_id : NP_031908.3

name	Dsc2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305007 CCDS:CCDS29077.1 GeneID:13506 MGI:103221
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0007156 - homophilic cell adhesion [Evidence IEA] codon_start : 1 product : desmocollin 2 protein_id : NP_038533.1

name	Dsc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981297 CCDS:CCDS29078.1 GeneID:13505 MGI:109173
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0030057 - desmosome [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0007156 - homophilic cell adhesion [Evidence IEA] codon_start : 1 exception : mismatches in translation product : desmocollin 1 protein_id : NP_038532.2

name	Dsg1c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:32129205 CCDS:CCDS29079.1 GeneID:211924 MGI:2664358
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0030057 - desmosome [Evidence TAS] [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0007156 - homophilic cell adhesion [Evidence IEA] codon_start : 1 note : desmoglein 1gamma; desmoglein 6 product : desmoglein 1 gamma protein_id : NP_859008.1

name	Dsg1a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51770799 GeneID:13510 MGI:94930
definition	codon_start : 1 product : desmoglein 1 alpha isoform 1 protein_id : XP_484705.1

name	Dsg1a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94404302 GeneID:13510 MGI:94930
definition	codon_start : 1 product : desmoglein 1 alpha isoform 2 protein_id : XP_985787.1

name	Dsg1b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:32129201 CCDS:CCDS29081.1 GeneID:225256 MGI:2664357
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0030057 - desmosome [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0007156 - homophilic cell adhesion [Evidence IEA] codon_start : 1 note : desmoglein 1beta; desmoglein 5 product : desmoglein 1 beta protein_id : NP_859010.1

name	Dsg4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31621307 CCDS:CCDS29082.1 GeneID:16769 MGI:2661061
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0030057 - desmosome [Evidence IMP]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0042640 - anagen [Evidence IMP]; GO:0007155 - cell adhesion [Evidence IEA]; GO:0016337 - cell-cell adhesion [Evidence IMP]; GO:0007156 - homophilic cell adhesion [Evidence IEA]; GO:0030216 - keratinocyte differentiation [Evidence IMP] codon_start : 1 note : lanceolate hair product : desmoglein 4 protein_id : NP_853543.1

name	Dsg3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625833 CCDS:CCDS29083.1 GeneID:13512 MGI:99499
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0030057 - desmosome [Evidence TAS]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence TAS]; GO:0016020 - membrane [Evidence IEA]; GO:0005914 - spot adherens junction [Evidence TAS] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence TAS]; GO:0007156 - homophilic cell adhesion [Evidence IEA] codon_start : 1 product : desmoglein 3 protein_id : NP_085099.2

name	Dsg2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22779879 CCDS:CCDS29084.1 GeneID:13511 MGI:1196466
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0030057 - desmosome [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0007156 - homophilic cell adhesion [Evidence IEA] codon_start : 1 exception : mismatches in translation product : desmoglein 2 protein_id : NP_031909.1

name	Ttr (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305599 CCDS:CCDS29085.1 GeneID:22139 MGI:98865
definition	GO_function : GO:0005386 - carrier activity [Evidence IEA]; GO:0005179 - hormone activity [Evidence IEA]; GO:0016918 - retinal binding [Evidence IEA]; GO:0019841 - retinol binding [Evidence IEA]; GO:0005496 - steroid binding [Evidence IEA] GO_process : GO:0006590 - thyroid hormone generation [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : transthyretin protein_id : NP_038725.1

name	LOC100040823 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149269684 GeneID:100040823
definition	codon_start : 1 product : similar to ribosomal protein L35 protein_id : XP_001475518.1

name	B4galt6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9790037 CCDS:CCDS29086.1 GeneID:56386 MGI:1928380
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0008378 - galactosyltransferase activity [Evidence ISS]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030145 - manganese ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0030148 - sphingolipid biosynthesis [Evidence TAS] codon_start : 1 function : catalyzes the synthesis of lactosylceramide note : UDP-Gal:glucosylceramide beta-1,4-galactosyltransferase; beta-1, 4-galactosyltransferase VI product : UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6 protein_id : NP_062711.1

name	D030074E01Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:119964702 CCDS:CCDS29087.1 GeneID:75964 MGI:2443008
definition	GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 product : hypothetical protein LOC75964 protein_id : NP_083767.2

name	Rnf125 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28076895 CCDS:CCDS29088.1 GeneID:67664 MGI:1914914
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006955 - immune response [Evidence IEA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 product : ring finger protein 125 protein_id : NP_080577.1

name	Rnf138 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46488941 CCDS:CCDS29090.1 GeneID:56515 MGI:1929211
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : ring finger protein 138 isoform 1 protein_id : NP_997506.1

name	Rnf138 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46488939 CCDS:CCDS29089.1 GeneID:56515 MGI:1929211
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : ring finger protein 138 isoform 2 protein_id : NP_062680.2

name	Mep1b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678862 GeneID:17288 MGI:96964
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008533 - astacin activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004238 - meprin A activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 exception : mismatches in translation note : meprin beta product : meprin 1 beta protein_id : NP_032612.1

name	EG622978 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82995837 GeneID:622978 MGI:3647253
definition	codon_start : 1 product : similar to ribosomal protein L27a-like protein_id : XP_893395.1

name	Gm944 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:134288888 CCDS:CCDS29091.1 GeneID:381126 MGI:2685790
definition	codon_start : 1 product : hypothetical protein LOC381126 protein_id : NP_001028617.2

name	LOC665629 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665629
definition	number : 2 pseudo : _no_value

name	LOC665629 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665629
definition	number : 1 pseudo : _no_value

name	LOC435558 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:435558
definition	number : 1 pseudo : _no_value

name	LOC435558 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:435558
definition	number : 2 pseudo : _no_value

name	LOC435558 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:435558
definition	number : 3 pseudo : _no_value

name	LOC435558 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:435558
definition	number : 4 pseudo : _no_value

name	LOC665722 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149269686 GeneID:665722
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 3 Proteins product : similar to Translocase of outer mitochondrial membrane 20 homolog (yeast) pseudo : _no_value transcript_id : XR_032341.1

clone name	MSMg01-115P08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-090O15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-320H14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-208N23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-457M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-311M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-127E03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-268I18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-465B11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-458L13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-394K09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-354H21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-063H22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-176L05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-457D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-344H14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-061O19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-418I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-135A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515E13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-501K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-423H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-102A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-181B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-052C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388K10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-459I04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-524K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-446D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-182E16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-065D02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-401J16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-306K05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-523M05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-466D15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098F05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439N03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-493O01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-068G11
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-385P22
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-167B10
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-378N15
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-406E08
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-521M06
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-056D10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-305G10
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-274P19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-161C09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-326M13
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-355G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-546O23
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-341L01
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-132D14
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-099A16
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-405C04
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-466D15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-390O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-079L08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-171D10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-510A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-323K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-295K15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-356A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-541D04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299I16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-385M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-082C12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-334H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-075J18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-325J21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-168K19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-152J01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-447M14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-334N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-405I20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-184D03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-510F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-271B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-288O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-165K01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387L22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-194A06
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-129C22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-472N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-093E23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-135H21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-293P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-295P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-471L03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119I06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-093K11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-138B22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-206F05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-152N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-184K21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-269A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-326F07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-480D02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-358H15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-486G11
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-056P19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-142J14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-146N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-214C13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-435O06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-318L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015O14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149O08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-300E21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-130K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045E20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-148J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134H20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-033I09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-083G23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-256E21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-054C08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-026O22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-061M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014O22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-320O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269L07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-031B07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-184I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156M23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-281I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193E01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-341I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250J05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-286L13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-245A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198E07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-136I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005F09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-091C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220G22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-165I02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-309P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-260O20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-050D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160H08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-212A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310L02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-026J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294P18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-283D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283F12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061G21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-229B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091I05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-275N21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-080E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308M06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-275G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164N18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-022N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049D03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-075M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225A07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-023M06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-107A03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-283H04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-293K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274G05
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-160H08.b	B6Ng01-160H08.g
ACC	DH953827	DH953828
length	1,186	1,108
definition	DH953827\|Mus musculus domesticus DNA, BAC clone: B6Ng01-160H08, 5' end.	DH953828\|Mus musculus domesticus DNA, BAC clone: B6Ng01-160H08, 3' end.
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	gaattccttgtgggggaatgagtagcagggataactaagatttgggccat ctttggatcaatatgatctagatgtgcaccctgcagtttcctttctatca gagctagctcctttttcagcctcagctaataattttcttgggctgtttaa atctttacatcttgtaatgtttgaaattaattacttggctctcaagtagc caaaccaattatagaccacagccagtaaataaatatctcccaataatttc tggagatcattaaaagcccttacttggtctctcctgatttgtaccttttg tgctgtaacctttttaggcttcttttacactctaggtaattaatagaatg tcccctttgtctttttaggcttcttttacactctaggtaattaatagaat gtcccctttgtcttttttcaggggtgacttgtgaactccaacaaggcaaa gttttctttatttcatcagacatactctccaacatatttctatctgaatc agtcaataacatgtaatggtaaattatggattgagaaaattacttatgaa tcctctctaatgctattgtacaaaatattggcacaagataggactgttta acattccttctggtaggagtttccaaagatatctctttactggacaactt ctattaaaggtaggtactgagaaagcaaacctttccttatcatgttcatg taaatgaattgtgataaaagcaatcttttaaatccatcactacatagagc attccttagttaacaagtaaggaatgggattccaggctgcaaggaacaca ttgactgaataattttattaattgctctgagatctttcaacatcttccat ttgccagatatctttttaatgacaaatacaagagaattccagggctagtg actcttctgtatgttgagcctgtagctgctcttggtctagcggttctagt gcctgcaactttttcttttgtcattgaccactgttcatgcaaataatatt gtttagtcacacccttagtggtaagctattggtgtcccagggtaaagttg aatgtccagccttctgtttatcttgtttttagaccggtacatactctgcc tttgaataccttttgtttcctgcatttggaccagtggaagtttgtcccgt cctccctgcctatctatctcttcctacacgtatcag	gaattcatggtcatcttcaggaaggttgaggctcacttaggctttttcaa atatgaaagcaagggaggcaggctgcagagatggctcagtaattaataat gcatatggttcttgtggaggacttgaactcagttctcaacctccatttca ggtggcttgcactggtctctaattccagcttcaggagagactgatgccta tggcctccaagggcacctgtattcatataaacacacacacccacacacac atacttttatttaaaaaactaaatgaagtaaaacaaaaccactagagatt tggcttcttttttcaggctttctatgcaaacaaaatcagagaattaacag taaatatcaactatatgtgtactatgcacatatccatcatacagaaattg cacatgcatgcacaagtgcacacacacacacacacacacacacacacacg cacacacactgttgtataatcctacaatgagcttttgagctaatgtcatt tttcccaccacagtttgaagcttggagaggctcagttgtgttaggtccca accccagccatctctcttgtagattagatcagactgtgaagtaagccaga ggataacctatcgaatctctggagcggggattgatcggccaccttacgga gtgttcaccatcaaccctcggactggagaaatcaatattacctcagtggt ggacagagagataaccccactgttcctgggtaaagtcctggtcatggatt ttttattaatttttaaaaaatgtttccctccttttaaaaaaaaaggaaaa ttaatcaagtcggtggattaaaaataatatagtagatttgaaacatttaa aagatttgaaagagtaagaaaagtctgaaggagctaagttggtgtcccat gtactacacctgtttatgaacaagttccatatcatttcaatagctaggtc cagtatagtctgaattgtattccattttctggagaattattttttcagag tgtttgctaattagcagctttgcttctgctttggccaagatcaatggcga gttctcacttcccggagggagaagaacttggggagaaccactggagctct agagtgaa
quality values	Open. Hide. 47 34 33 39 61 61 53 53 9 31 50 37 29 50 50 61 61 35 29 55 55 55 55 55 47 32 18 11 28 19 28 38 20 20 19 33 41 52 35 47 59 59 59 59 59 59 52 59 49 59 59 61 59 59 59 59 59 59 59 41 49 59 52 59 59 59 61 59 59 59 36 59 59 59 59 59 59 59 59 61 59 59 59 52 52 44 59 59 59 59 59 59 59 59 59 59 52 59 52 41 29 61 59 59 59 59 59 59 61 61 61 61 61 61 59 59 59 59 52 59 59 59 59 59 44 59 59 59 59 59 59 59 59 59 59 61 61 59 59 59 59 59 59 59 61 59 59 59 59 59 59 61 61 59 59 59 59 61 59 61 61 59 59 61 52 59 59 61 61 59 59 59 61 61 61 61 59 59 59 59 59 61 61 61 61 61 61 61 59 61 61 61 61 59 59 59 59 59 49 59 61 59 61 59 59 59 59 59 61 61 61 61 61 59 61 59 59 59 59 59 59 59 61 59 59 59 59 59 61 61 59 59 59 61 61 61 61 61 61 61 61 61 59 61 59 61 61 61 61 59 59 61 61 61 59 59 61 59 59 59 59 59 59 59 59 59 59 61 61 59 59 59 59 59 59 59 43 43 59 61 61 61 61 59 59 59 59 59 59 59 59 52 52 59 61 61 61 61 52 52 49 59 52 52 59 52 59 59 59 61 61 61 61 59 59 59 59 59 59 61 61 61 61 59 59 59 59 59 52 59 59 59 59 59 52 59 52 55 61 55 55 61 61 55 61 52 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 37 38 27 29 39 43 61 61 61 61 61 61 55 61 55 61 61 61 55 52 43 55 41 52 55 61 61 61 61 61 61 52 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 55 41 49 55 55 61 55 61 61 61 61 61 61 50 55 61 55 55 55 61 61 61 61 61 61 61 61 61 55 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 53 61 53 61 61 61 50 61 53 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 53 61 61 50 52 61 50 53 52 61 50 61 61 61 47 47 52 52 52 50 52 61 47 52 53 53 61 61 61 61 61 61 47 47 61 61 61 61 53 33 47 61 53 50 61 61 61 53 45 61 52 61 61 61 53 61 61 61 61 53 61 61 57 57 57 57 50 53 53 46 57 57 57 43 39 57 46 33 52 57 42 53 53 53 52 53 41 38 47 27 34 40 57 47 43 29 42 45 47 43 47 53 35 57 57 31 53 45 50 53 50 39 53 57 57 53 53 53 53 45 53 47 28 50 32 47 53 34 53 53 40 57 53 30 53 53 35 53 34 45 42 40 37 37 32 53 35 38 53 34 47 43 37 42 30 57 50 57 45 53 42 41 39 30 22 45 41 26 47 30 52 34 50 31 38 28 53 53 43 19 41 13 13 27 32 29 44 23 26 52 32 57 38 45 52 41 52 35 39 39 29 38 33 10 23 33 42 38 47 32 41 57 37 31 37 53 37 20 34 42 10 38 38 36 53 53 57 38 37 34 27 40 42 40 21 57 40 42 44 37 26 28 47 52 27 38 38 38 32 33 27 33 20 26 16 16 37 24 33 30 21 41 50 40 26 29 31 10 8 41 21 27 31 21 52 26 32 30 11 6 7 6 18 21 37 57 47 37 41 10 11 33 27 53 27 29 32 31 31 28 52 36 52 27 26 32 37 41 25 22 36 40 23 28 34 37 22 33 29 32 29 21 57 45 35 14 9 25 23 57 35 37 39 20 24 41 30 28 37 14 20 13 40 38 57 19 30 25 32 30 33 36 28 22 23 32 30 25 44 51 29 25 21 28 26 19 47 25 29 24 44 30 51 51 51 36 29 14 9 21 9 10 13 39 17 34 28 33 25 29 16 20 6 31 36 19 21 16 21 10 15 46 46 31 25 22 17 7 20 7 8 21 18 11 18 26 14 21 8 12 10 27 23 21 20 38 17 22 29 16 29 19 28 14 32 28 28 11 7 10 13 29 19 29 24 17 12 24 11 17 15 34 28 21 34 35 27 21 24 33 23 30 24 24 18 28 14 28 24 29 43 28 23 19 26 51 51 23 19 10 29 14 15 19 22 34 26 23 18 20 27 29 21 19 29 20 6 11 14 18 51 15 15 13 14 12 12 27 14 28 12 41 23 21 8 9 30 32 18 30 7 51 24 34 30 16 6 9 28 35 9 21 13 11 6 14 23 29 11 15 36 7 8 16 7 38 27 17 7 5 8 6 10 24 21 19 28 12 8 28 17 5 13 5 10 11 9 8 33 16 8 8 21 10 14 19 38 28 8 6 31 25 14 27 9 38 14 8 8 14 7 6 8 5 5 8 15 10 12 14 6 8 6 7 7 8 17 14 16 29 35 9 8 15 18 8 35 12 12 25 24 35 9 21 10 29 33 11 25 17 13 11 8 29 29 14 8 5 5 6 10 12 4 4 5 4 4 6 7 7 19 18 5 3 3 4 14 5 4 11 8 21 8 36 13 13 5 12 5 5 4 4 7 14 4 4 15 5 5 5 4 7 3 5 4 4 5 13 5 5 6 3 5 5 4	Open. Hide. 55 47 37 47 55 24 17 29 43 37 27 21 25 37 36 61 55 49 49 52 61 61 59 59 59 59 59 59 61 59 61 59 59 59 52 59 59 59 59 49 61 59 61 59 61 59 59 59 49 52 59 59 49 59 43 43 49 44 59 59 52 59 59 59 55 61 59 61 59 59 59 61 59 61 61 59 52 45 61 59 59 61 61 61 59 61 59 59 43 52 52 59 59 59 59 61 55 55 61 61 61 59 59 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 59 59 59 59 59 43 36 59 61 59 59 59 52 52 59 61 59 59 52 43 59 59 59 59 41 49 59 59 61 61 59 61 61 61 59 59 59 61 61 59 59 59 61 59 59 59 59 59 59 61 61 59 59 61 61 61 61 59 59 59 55 59 61 59 61 59 59 61 59 59 59 61 61 59 59 59 61 61 52 55 55 59 59 52 59 59 61 59 59 59 59 59 61 61 59 59 59 59 59 45 59 52 59 59 59 59 59 59 59 52 59 52 59 52 59 59 59 52 59 49 59 52 59 52 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 59 59 61 61 61 59 61 61 61 61 61 61 59 61 59 61 61 61 61 59 59 61 59 59 61 59 61 61 61 59 59 59 59 59 59 61 61 61 59 61 61 61 61 61 61 61 61 61 61 55 55 55 55 61 61 61 61 61 55 61 61 55 52 55 55 61 52 61 61 55 61 55 55 49 61 52 61 55 55 61 55 55 55 55 52 55 55 55 61 61 61 61 61 55 55 61 61 61 61 61 61 61 61 61 55 55 55 55 55 55 61 50 45 50 49 55 49 55 50 55 43 55 50 55 55 55 50 49 34 55 55 50 55 55 61 50 49 50 50 55 55 50 49 61 61 61 50 55 49 50 49 43 55 49 49 50 49 50 49 50 49 50 49 55 50 55 43 55 50 50 49 50 43 47 43 50 43 50 43 50 43 50 43 50 50 61 53 61 61 61 52 61 52 61 50 61 43 50 53 50 45 50 39 50 50 50 61 53 53 53 50 50 50 61 53 50 52 53 61 61 61 61 61 52 50 50 42 50 50 61 47 52 50 53 53 61 61 61 50 50 50 34 50 47 47 61 53 53 61 61 53 53 61 61 50 61 61 53 61 47 61 45 61 50 61 42 53 53 42 17 42 57 57 53 57 46 53 43 13 16 10 15 17 19 22 53 53 53 47 53 47 42 47 47 28 53 53 57 57 43 57 57 33 53 40 45 24 43 34 45 50 38 46 40 40 43 26 46 45 50 53 42 45 45 47 33 38 38 53 43 45 53 47 32 57 32 53 37 28 50 36 52 52 45 39 45 38 26 31 43 45 53 53 53 53 57 47 38 34 42 53 38 47 50 39 34 36 50 38 45 47 39 25 12 34 30 53 53 52 32 50 37 32 46 47 23 17 22 7 12 27 30 46 25 30 53 41 39 42 43 57 53 45 50 34 47 52 20 34 57 46 52 42 53 53 53 36 41 24 52 40 35 52 20 23 38 35 38 39 24 32 7 31 40 19 39 44 50 32 37 50 53 38 52 31 25 30 12 14 31 53 46 57 28 52 29 43 21 22 18 38 23 17 57 18 15 29 46 11 17 30 43 40 36 33 32 28 30 22 27 33 22 15 9 53 57 57 53 33 27 22 44 30 15 25 53 53 45 41 30 53 53 53 53 15 20 34 25 53 40 48 53 41 33 33 48 31 57 57 25 25 51 46 45 45 39 44 39 23 15 39 25 44 45 44 29 29 29 19 20 24 12 44 26 23 11 5 26 17 44 30 15 8 34 36 47 46 46 29 22 20 25 9 21 29 36 34 9 17 28 31 7 37 6 30 28 51 22 34 32 15 47 13 20 29 33 25 14 28 20 51 51 29 28 46 39 33 29 9 30 23 22 18 36 51 51 36 11 10 22 23 17 16 9 22 28 28 17 29 28 19 16 7 8 9 28 29 14 20 10 28 46 33 12 13 21 6 12 31 33 22 21 16 29 29 20 29 21 51 23 15 19 23 19 15 16 6 32 30 20 32 22 13 14 11 9 9 23 20 33 46 32 16 14 23 23 20 27 28 15 10 18 9 24 23 28 11 17 16 8 13 9 22 6 22 15 22 15 34 11 10 10 12 21 28 28 13 9 13 6 7 5 6 24 8 31 8 22 5 8 32 9 8 9 6 7 5 4 10 8 24 25 9 8 6 8 21 13 14 8 13 11 19 15 14 10 8 35 15 11 12 19 23 26 14 20 15 9 6 6 8 9 30 11 22 33 29 8 10 29 19 8 8 8 29 15 21 10 13 33 8 14 26 4 25 9 14 4 3 4 14 9 4 4 3 7 19 29 9 10 13 12 14 18 12 4 3 15 5 7 11 5 7 9 15 7 4 2 3 5 11 5 14 17 3 4 7 8 5 9 4 4 7 11 7 5 4 6 4 4 3 4 7

Alignment Information

BAC End 1

BAC End 2

seq1: chr18_20607144_20608244
seq2: B6Ng01-160H08.g_67_1174

seq1  GAATTCATGGTCATCTTCAGGAAGGTTGAGGCTCACTTAGGCTTTTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGTCATCTTCAGGAAGGTTGAGGCTCACTTAGGCTTTTTCAA  50

seq1  ATATGAAAGCAAGGGAGGCAGGCTGCAGAGATGGCTCAGTAATTAATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAAGCAAGGGAGGCAGGCTGCAGAGATGGCTCAGTAATTAATAAT  100

seq1  GCATATGGTTCTTGTGGAGGACTTGAACTCAGTTCTCAACCTCCATTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGGTTCTTGTGGAGGACTTGAACTCAGTTCTCAACCTCCATTTCA  150

seq1  GGTGGCTTGCACTGGTCTCTAATTCCAGCTTCAGGAGAGACTGATGCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTTGCACTGGTCTCTAATTCCAGCTTCAGGAGAGACTGATGCCTA  200

seq1  TGGCCTCCAAGGGCACCTGTATTCATATAAACACACACACCCACACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCCAAGGGCACCTGTATTCATATAAACACACACACCCACACACAC  250

seq1  ATACTTTTATTTAAAAAACTAAATGAAGTAAAACAAAACCACTAGAGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTTATTTAAAAAACTAAATGAAGTAAAACAAAACCACTAGAGATT  300

seq1  TGGCTTCTTTTTTCAGGCTTTCTATGCAAACAAAATCAGAGAATTAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCTTTTTTCAGGCTTTCTATGCAAACAAAATCAGAGAATTAACAG  350

seq1  TAAATATCAACTATATGTGTACTATGCACATATCCATCATACAGAAATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATCAACTATATGTGTACTATGCACATATCCATCATACAGAAATTG  400

seq1  CACATGCATGCACAAGTGCACACACACACACACACACACACACACACACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCATGCACAAGTGCACACACACACACACACACACACACACACACG  450

seq1  CACACACACTGTTGTATAATCCTACAATGAGCTTTTGAGCTAATGTCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACTGTTGTATAATCCTACAATGAGCTTTTGAGCTAATGTCATT  500

seq1  TTTCCCACCACAGTTTGAAGCTTGGAGAGGCTCAGTTGTGTTAGGTCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCACCACAGTTTGAAGCTTGGAGAGGCTCAGTTGTGTTAGGTCCCA  550

seq1  ACCCCAGCCATCTCTCTTGTAGATTAGATCAGACTGTGAAGTAAGCCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGCCATCTCTCTTGTAGATTAGATCAGACTGTGAAGTAAGCCAGA  600

seq1  GGATAACCTATCGAATCTCTGGAGCGGGGATTGATCGGCCACCTTACGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAACCTATCGAATCTCTGGAGCGGGGATTGATCGGCCACCTTACGGA  650

seq1  GTGTTCACCATCAACCCTCGGACTGGAGAAATCAATATTACCTCAGTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCACCATCAACCCTCGGACTGGAGAAATCAATATTACCTCAGTGGT  700

seq1  GGACAGAGAGATAACCCCACTGTTCCTGG--TAAGTCCTGGTCATGGA-T  747
      |||||||||||||||||||||||||||||   |||||||||||||||| |
seq2  GGACAGAGAGATAACCCCACTGTTCCTGGGTAAAGTCCTGGTCATGGATT  750

seq1  TTTTATTAATTTTTTAAAAAATGTTTCCCTCCTTTTAAAAAAAAAGGAAA  797
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTAA-TTTTTAAAAAATGTTTCCCTCCTTTTAAAAAAAAAGGAAA  799

seq1  ATTAATCAAGTCGGTGGATTAAAAATAATATAGTAGA-TTGAAACAATTA  846
      ||||||||||||||||||||||||||||||||||||| |||||||| |||
seq2  ATTAATCAAGTCGGTGGATTAAAAATAATATAGTAGATTTGAAACATTTA  849

seq1  AAAGATTTGAAAGAGTAAGAAAAGTCTGAAGGAGCTAAGTTGGTGTCCCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTTGAAAGAGTAAGAAAAGTCTGAAGGAGCTAAGTTGGTGTCCCA  899

seq1  TGTACTACACCTGTTTATGAACAAGTTCCAATATCATTTCAATAGCTAGG  946
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGTACTACACCTGTTTATGAACAAGTTCC-ATATCATTTCAATAGCTAGG  948

seq1  TTCCAGTATAGTCTGAATTGTATTTCATATTCT-GAGAAATATTATTTCA  995
       ||||||||||||||||||||||| ||| |||| ||||| |||| |||| 
seq2  -TCCAGTATAGTCTGAATTGTATTCCATTTTCTGGAGAATTATTTTTTC-  996

seq1  AGAGTG-TTGCTAATTAAGCAGCTTTGC-TCTGCTTT-GCCCAGATCCAT  1042
      |||||| ||||||||| ||||||||||| |||||||| ||| |||| || 
seq2  AGAGTGTTTGCTAATT-AGCAGCTTTGCTTCTGCTTTGGCCAAGAT-CAA  1044

seq1  TGCCGAGCTCTCAACTCCCG--AGGAGAAG-ACTTGGAGAG-ACCACTGG  1088
      || |||| |||||  |||||   ||||||| |||||| ||| ||||||||
seq2  TGGCGAGTTCTCACTTCCCGGAGGGAGAAGAACTTGGGGAGAACCACTGG  1094

seq1  AGCTC-AGAGTGAA  1101
      ||||| ||||||||
seq2  AGCTCTAGAGTGAA  1108

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information