BAC Information

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BAC

Clone NameB6Ng01-161E11
Chromosome18 (Build37)
Map Location 38,028,785 - 38,187,961
singlet/doubletdoublet
Overlap geneDiap1, Hdac3, 4631403P03Rik, Fchsd1, Centd3
Upstream geneEG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5
Downstream genePcdh1, LOC100042583, 1700086O06Rik, 0610009O20Rik, Pcdh12, Rnf14, Gnpda1, LOC240219, LOC100041839, Ndfip1, Spry4, 9630014M24Rik, LOC100041865, LOC100041875, LOC100042671, LOC666809, LOC100041894, Fgf1, EG545253, Arhgap26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161E11.bB6Ng01-161E11.g
ACCDH954438DH954439
length1,117449
definitionDH954438|Mus musculus domesticus DNA, BAC clone: B6Ng01-161E11, 5' end.DH954439|Mus musculus domesticus DNA, BAC clone: B6Ng01-161E11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,028,785 - 38,029,938)(38,187,507 - 38,187,961)
sequence
gaattcctggatagccagggatatatagacaccctatcttgaaatccatg
aacccccccccaaaaaaaaaccccactcaaatcaactgtatctatatccc
acatcttttgctatgtgcatggggaccctgtcaaactaccagaagaccag
catcagatatggtcatcaatggatcaaaaccctcccagaactacaacagt
cttggttcctcccataagactataagattttgattcatattctgttgagg
cgttagtgtcaaatgtctgacacacaatacatattcaatgaataaagatc
aggattgtcagctggacttgtttatatgaaaaaaaacaaaaacaaaacaa
cctacttagggccagtgagatggctcaatagataaagtacttttcatgtg
ttgtgaggacccgagttaggtcctagaacccatgtaagccagacgtggta
tcaagagtctgtaatctcagttctctacagcaagctgggagatggggaca
ggagaatccttgaagtttgcaggccagccagactggcataaacagtgttg
aacagaagagaccctggctcaaacaaggtagaaggtaagggtcagcaccc
aaggctgcccccccccctttagctgctacatacatatgctacggcattca
aacacatgtgtgcacactctctccctttctcaatttaaaaagaaaatcat
ccaggttaaatacacagaaaggctaaagtcaaaggactaagaaagtatga
gtttatagcaaacaaattctaactaaaaggaagttcctgaagttgcatta
acattaaacaactattaaaaaaatcagagtagaagagatttgaattcttt
agtgatatagtaagactttgggtttgtatgcacctagcaatgtatcttta
atcacaatcataaacaccaaatgcatataccacaatctaacagagacaca
tcagacagtcactctgtatgcagtaatataaatgagctgagtcattttga
ctgtgactctataaactctactcttcttttcatcatgtgtacataataga
aaggtgacacacatttctccctcttgaccaaaaaagagcaaactatgcta
gtttgtctatgtacaaa
ccccactcattcaacaaatcgctactgagaggttacagtgtgctaggcac
tgcctggatacaaggatgtaacaatataacaaacaaaggcattgtcttcc
tgcagcttgcagtccgaggaggtggtgagggtcctgtggtaagtagtcaa
gtaagcttggagtgttccttagtgtttcctagtgacaagtgcgagcgctc
gggcaggaggtaggcttgctctatgaggttgacctcactgcgcctatgcc
tgaatgggtgatggggagacctggtattgctgacacctgcatctggacca
ggcagatagaatatccagtgcaaatcctgagcaggaacttcctcacaagc
tcactcttaagcttgtaaagggcacagacaccagcagggctggaggaatg
agagaagaggtgggggaggatacaggatttaccatctagttctaggcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_38028785_38029938
seq2: B6Ng01-161E11.b_48_1164

seq1  GAATTCCTGGATAGCCAGGGATATATAGACACCCTATCTTGAAATCCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGATAGCCAGGGATATATAGACACCCTATCTTGAAATCCATG  50

seq1  AACCCCCCCCCAAAAAAAAACCCCACTCAAATCAACTGTATCTATATCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCCCCCCAAAAAAAAACCCCACTCAAATCAACTGTATCTATATCCC  100

seq1  ACATCTTTTGCTATGTGCATGGGGACCCTGTCAAACTACCAGAAGACCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTTTGCTATGTGCATGGGGACCCTGTCAAACTACCAGAAGACCAG  150

seq1  CATCAGATATGGTCATCAATGGATCAAAACCCTCCCAGAACTACAACAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGATATGGTCATCAATGGATCAAAACCCTCCCAGAACTACAACAGT  200

seq1  CTTGGTTCCTCCCATAAGACTATAAGATTTTGATTCATATTCTGTTGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTCCTCCCATAAGACTATAAGATTTTGATTCATATTCTGTTGAGG  250

seq1  CGTTAGTGTCAAATGTCTGACACACAATACATATTCAATGAATAAAGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAGTGTCAAATGTCTGACACACAATACATATTCAATGAATAAAGATC  300

seq1  AGGATTGTCAGCTGGACTTGTTTATATGAAAAAAAACAAAAACAAAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTGTCAGCTGGACTTGTTTATATGAAAAAAAACAAAAACAAAACAA  350

seq1  CCTACTTAGGGCCAGTGAGATGGCTCAATAGATAAAGTACTTTTCATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTTAGGGCCAGTGAGATGGCTCAATAGATAAAGTACTTTTCATGTG  400

seq1  TTGTGAGGACCCGAGTTAGGTCCTAGAACCCATGTAAGCCAGACGTGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGGACCCGAGTTAGGTCCTAGAACCCATGTAAGCCAGACGTGGTA  450

seq1  TCAAGAGTCTGTAATCTCAGTTCTCTACAGCAAGCTGGGAGATGGGGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGTCTGTAATCTCAGTTCTCTACAGCAAGCTGGGAGATGGGGACA  500

seq1  GGAGAATCCTTGAAGTTTGCAGGCCAGCCAGACTGGCATAAACAGTGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATCCTTGAAGTTTGCAGGCCAGCCAGACTGGCATAAACAGTGTTG  550

seq1  AACAGAAGAGACCCTGGCTCAAACAAGGTAGAAGGTAAGGGTCAGCACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAGAGACCCTGGCTCAAACAAGGTAGAAGGTAAGGGTCAGCACCC  600

seq1  AAGGCTGCCCCCCCCCCTTTAGCTGCTACATACATATGCTACGGCATTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGCCCCCCCCCCTTTAGCTGCTACATACATATGCTACGGCATTCA  650

seq1  AACACATGTGTGCACACTCTCTCCCTTTCTCAATTTAAAAAGAAAATCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATGTGTGCACACTCTCTCCCTTTCTCAATTTAAAAAGAAAATCAT  700

seq1  CCAGGTTAAATACACAGAAAGGCTAAAGTCAAAGGACTAAGAAAGTATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTAAATACACAGAAAGGCTAAAGTCAAAGGACTAAGAAAGTATGA  750

seq1  GGTTTATAGCAAACAAATTCTAACTAAAAGGAAGTTCCTGAAGTTGCATT  800
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GTTTATAGCAAACAAATTCTAACTAAAAGGAAGTTCCTGAAGTTGCATT  799

seq1  AACATTAAACAACTATTAAAAAAATCAGAGTAGAAGAGATTTGAATTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTAAACAACTATTAAAAAAATCAGAGTAGAAGAGATTTGAATTCTT  849

seq1  TAGTGATATAGTAAGACTTTGGGTTTGTATGCACCTAGCAATGTATCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATATAGTAAGACTTTGGGTTTGTATGCACCTAGCAATGTATCTTT  899

seq1  AATCACAATCATAAACACCAAATGCATATAACCACAATCTAACAAGAAGG  950
      ||||||||||||||||||||||||||||| ||||||||||||| |||  |
seq2  AATCACAATCATAAACACCAAATGCATAT-ACCACAATCTAAC-AGA--G  945

seq1  ACACATCAGACAAGTCCACTCTGTTATGCCAAGGTAATATAAATGAAGGC  1000
      ||||||||||| ||| ||||||| |||||    |||||||||||||  ||
seq2  ACACATCAGAC-AGT-CACTCTG-TATGC---AGTAATATAAATGA--GC  987

seq1  TGAGTCCATTTTTGACTGTGGACTCCTATAAAACTCTACCTCTCTCTTTC  1050
      ||||||   |||||||||| |||| |||| |||||||| |||| ||||| 
seq2  TGAGTC--ATTTTGACTGT-GACT-CTAT-AAACTCTA-CTCT-TCTTTT  1030

seq1  CATTCCATGTTGTACATAATAGAAAAGGTGACAACCAACATTTTCTCCCT  1100
      |||  |||| |||||||||||| ||||||||||  ||    |||||||||
seq2  CAT--CATG-TGTACATAATAG-AAAGGTGACACACA----TTTCTCCCT  1072

seq1  CCTTTGACACAAAAAAAAGAAGCAAAACTATGCTAAGGTTTGTCTATGTA  1150
      |  ||||| ||||||| ||     |||||||||||  |||||||||||||
seq2  C--TTGAC-CAAAAAAGAG----CAAACTATGCTA--GTTTGTCTATGTA  1113

seq1  CAAA  1154
      ||||
seq2  CAAA  1117

seq1: chr18_38187507_38187961
seq2: B6Ng01-161E11.g_70_524 (reverse)

seq1  TGGCCTAGAACTGGATGGT-AATCCTGTATCCTCCCCCACCTCTTCTCTC  49
      |||||||||||| |||||| ||||||||||||||||||||||||||||||
seq2  TGGCCTAGAACTAGATGGTAAATCCTGTATCCTCCCCCACCTCTTCTCTC  50

seq1  ATTCCTCCAGCCCTGCTGGTGTCTGTGCCCTTTACAAGCTTAAGTGTGAG  99
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATTCCTCCAGCCCTGCTGGTGTCTGTGCCCTTTACAAGCTTAAGAGTGAG  100

seq1  CTTGTGAGGAAGTTCCTGCTCAGGATTTGCACTGGATATTCTATCTGCCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGAGGAAGTTCCTGCTCAGGATTTGCACTGGATATTCTATCTGCCT  150

seq1  GGTCCAGATGCAGGTGTCAGCAATACCAGGTCTCCCCATCACCCATTCAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAGATGCAGGTGTCAGCAATACCAGGTCTCCCCATCACCCATTCAG  200

seq1  GCATAGGCGCAGTGAGGTCAACCTCATAGAGCAAGCCTACCTCCTGCCCG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGGCGCAGTGAGGTCAACCTCATAGAGCAAGCCTACCTCCTGCCCG  250

seq1  AGCGCTCGCACTTGTCACTAGGAAACACTAAGGAACACTCCAAGCTTACT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCTCGCACTTGTCACTAGGAAACACTAAGGAACACTCCAAGCTTACT  300

seq1  TGACTACTTACCACAGGACCCTCACCACCTCCTCGGACTGCAAGCTGCAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTACTTACCACAGGACCCTCACCACCTCCTCGGACTGCAAGCTGCAG  350

seq1  GAAGACAATGCCTTTGTTTGTTATATTGTTACATCCTTGTATCCAGGCAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAATGCCTTTGTTTGTTATATTGTTACATCCTTGTATCCAGGCAG  400

seq1  TGCCTAGCACACTGTAACCTCTCAGTAGCGATTTGTTGAATGAGTGGGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  TGCCTAGCACACTGTAACCTCTCAGTAGCGATTTGTTGAATGAGTGGG-G  449

seq1  GAATTC  455
      ||||||
seq2  GAATTC  455