BAC Information

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BAC

Clone NameB6Ng01-161P07
Chromosome2 (Build37)18 (Build37)
Map Location 26,452,279 - 26,452,32287,931,837 - 87,932,729
singlet/doubletsingletsinglet
Overlap geneAgpat2
Upstream geneB230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1, Kcnt1, Camsap1, LOC100040100, LOC665199, Ubadc1, Btbd14a, C330006A16Rik, Lhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik, Gpsm1, D2Bwg1335e, Card9, Snapc4, Sdccag3, Pmpca, Inpp5e, AU024582, Notch1, Egfl7
Downstream geneB230317C12Rik, 5730588L14Rik, LOC100039446, Lcn4, LOC669582, Abo, Surf6, Surf5-ps, Surf5, Rpl7a, Surf1, Surf2, Surf4, Gm711, Rexo4, Adamts13, 5930434B04Rik, Slc2a6, LOC665315, 1110002H13Rik, Adamtsl2, C630035N08Rik, Dbh, Sardh, Vav2, D2Bwg1423e, Brd3, Wdr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161P07.bB6Ng01-161P07.g
ACCDH954926DH954927
length952893
definitionDH954926|Mus musculus domesticus DNA, BAC clone: B6Ng01-161P07, 5' end.DH954927|Mus musculus domesticus DNA, BAC clone: B6Ng01-161P07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(26,452,279 - 26,452,322)(87,931,837 - 87,932,729)
sequence
gaattccaaatcctgtagcaacacgtttcacattcacttagacagctgtg
cccctccagctgcctgtaacacacatggctcccatggtctagctccattt
cctccagtttttcctgaaagatatctcatagttctggcatttcccgaaaa
ttggagccaccagtgaaacataagcttcacttccatagctttatacaatg
gtctttacagcctcctagcctctcagggccttctcataaaagccccaagc
accaccacagtttgtctggctctcaacagcactctgaaattgcagaggta
aaacccacaaccactcattattaaattatatatcatgtctataatccagt
accatgtagacattgctacatttgaatgtcagcttggcaaggatcctcac
ttcctttcaacaacactagcagcagtttgatgaaaactttgggaactctt
tgggcttttcttctgatgttagagtctgattggtgtagttatgaggacaa
ccttcttactgactcagtacagagagggagatattacctcaactatctta
atcttcaagattatattttcgtttcagcacaagatttgactgcaatatta
cattttctagtgttattctatctccatactatacatttattgtttctatt
tcatttgctcattttcattataaaccttcataagggaaatcaataataac
tatccctcagtttcaacattatatagctgtggtggtttgaataaaatgtc
cacccccatagactcagagatttgaatgcttagtcactagggagtggcat
taataggaggtgtgggccatgtgtagggaagggatggtgttttttgagcc
agtatgtcactaggggtggggctttgaatttttagactcttcaagccagg
cccattcatctctctctctctctctctctctctctctctctctctcctgt
gt
gaattctgggagaaataaggcaagaggtaaggcaagagggtcgctgaaat
gaggtgttaaggcagacaggcacatggtgcctgagcttaggtcatgtggc
agaatataggttaaaataactaggttattttagttatgatctattcagaa
tagagcctagctaatatggccaagatatttataaatatattttgagtctg
agtcttatttcagcagccataggcctgggaggaagaaccaggcttaacta
taatatcatctcctcaattcagtgagactggaggttctcagcatgtctct
tctctgctttgatcatggtaagaagcacagagaggttcccattcccatgc
tttctctataaagccatggatattctgtatcatgcagccaataatatcag
tactgtggaagaaaaactgttctcacacaaataatcttgtttatacagtt
atcctgggtttactgtgtgggctaaagacaagagtccttaagggcagaag
aaggggttggagaaatggtatgtaaaagaatgtcaccattgcatacacta
gctgaaaggaccctggtatagctgtctctcgtgagactaggccagggcct
agcaaacacataaatggatgctcacagtcagctattggatggatcacagg
gcccccaatggaggagctagagaaagtaaccaaggaactaaagagatctg
caaccctgtaggtgcaacaacattatgaactaaccagtaccccggagctc
ttgactctagctgcatatgtatcaaaagatggcctggtaagccatcactg
gaaagaggcccattggacatgcaaactttatatgccccagtacagggtaa
cgccagggccaaaaagtgggaatgggtgggtaggggaatgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_26452279_26452322
seq2: B6Ng01-161P07.b_953_996 (reverse)

seq1  ACACAGGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGA  44
      |||||||||||||||||||||| |||||||||||||||||||||
seq2  ACACAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  44

seq1: chr18_87931837_87932729
seq2: B6Ng01-161P07.g_68_960

seq1  GAATTCTGGGAGAAATAAGGCAAGAGGTAAGGCAAGAGGGTCGCTGAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAGAAATAAGGCAAGAGGTAAGGCAAGAGGGTCGCTGAAAT  50

seq1  GAGGTGTTAAGGCAGACAGGCACATGGTGCCTGAGCTTAGGTCATGTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGTTAAGGCAGACAGGCACATGGTGCCTGAGCTTAGGTCATGTGGC  100

seq1  AGAATATAGGTTAAAATAACTAGGTTATTTTAGTTATGATCTATTCAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATAGGTTAAAATAACTAGGTTATTTTAGTTATGATCTATTCAGAA  150

seq1  TAGAGCCTAGCTAATATGGCCAAGATATTTATAAATATATTTTGAGTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCCTAGCTAATATGGCCAAGATATTTATAAATATATTTTGAGTCTG  200

seq1  AGTCTTATTTCAGCAGCCATAGGCCTGGGAGGAAGAACCAGGCTTAACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTATTTCAGCAGCCATAGGCCTGGGAGGAAGAACCAGGCTTAACTA  250

seq1  TAATATCATCTCCTCAATTCAGTGAGACTGGAGGTTCTCAGCATGTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCATCTCCTCAATTCAGTGAGACTGGAGGTTCTCAGCATGTCTCT  300

seq1  TCTCTGCTTTGATCATGGTAAGAAGCACAGAGAGGTTCCCATTCCCATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCTTTGATCATGGTAAGAAGCACAGAGAGGTTCCCATTCCCATGC  350

seq1  TTTCTCTATAAAGCCATGGATATTCTGTATCATGCAGCCAATAATATCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTATAAAGCCATGGATATTCTGTATCATGCAGCCAATAATATCAG  400

seq1  TACTGTGGAAGAAAAACTGTTCTCACACAAATAATCTTGTTTATACAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGGAAGAAAAACTGTTCTCACACAAATAATCTTGTTTATACAGTT  450

seq1  ATCCTGGGTTTACTGTGTGGGCTAAAGACAAGAGTCCTTAAGGGCAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGGTTTACTGTGTGGGCTAAAGACAAGAGTCCTTAAGGGCAGAAG  500

seq1  AAGGGGTTGGAGAAATGGTATGTAAAAGAATGTCACCATTGCATACACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGTTGGAGAAATGGTATGTAAAAGAATGTCACCATTGCATACACTA  550

seq1  GCTGAAAGGACCCTGGTATAGCTGTCTCTCGTGAGACTAGGCCAGGGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAAGGACCCTGGTATAGCTGTCTCTCGTGAGACTAGGCCAGGGCCT  600

seq1  AGCAAACACATAAATGGATGCTCACAGTCAGCTATTGGATGGATCACAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACACATAAATGGATGCTCACAGTCAGCTATTGGATGGATCACAGG  650

seq1  GCCCCCAATGGAGGAGCTAGAGAAAGTAACCAAGGAACTAAAGAGATCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCAATGGAGGAGCTAGAGAAAGTAACCAAGGAACTAAAGAGATCTG  700

seq1  CAACCCTGTAGGTGCAACAACATTATGAACTAACCAGTACCCCGGAGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCTGTAGGTGCAACAACATTATGAACTAACCAGTACCCCGGAGCTC  750

seq1  TTGACTCTAGCTGCATATGTATCAAAAGATGGCCTGGTAAGCCATCACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCTAGCTGCATATGTATCAAAAGATGGCCTGGTAAGCCATCACTG  800

seq1  GAAAGAGGCCCATTGGACATGCAAACTTTATATGCCCCAGTACAGGGTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGGCCCATTGGACATGCAAACTTTATATGCCCCAGTACAGGGTAA  850

seq1  CGCCAGGGCCAAAAAGTGGGAATGGGTGGGTAGGGGAATGGGG  893
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAGGGCCAAAAAGTGGGAATGGGTGGGTAGGGGAATGGGG  893