BAC Information

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BAC

Clone NameB6Ng01-162A11
Chromosome18 (Build37)
Map Location 48,723,461 - 48,724,589
singlet/doubletsinglet
Overlap genenone
Upstream geneA730092B10, LOC383325, LOC100042982, LOC100042284, LOC100042301, EG433182, LOC383326, LOC100042323
Downstream geneLOC545470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162A11.bB6Ng01-162A11.g
ACCDH954977DH954978
length1,1151,238
definitionDH954977|Mus musculus domesticus DNA, BAC clone: B6Ng01-162A11, 5' end.DH954978|Mus musculus domesticus DNA, BAC clone: B6Ng01-162A11, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccagtacccatataaaaatcaagagtgctggcattcagctgtaa
tcctggtatagaggaaagggaagaataaagataggagcattcccagcact
ttctggccagatggtccaactgattagtaagctctgtgcttagagcaaga
ccctgtcaacctctggcccatacaggcatgtgtgtacacatgtacccaca
caagtacttacacacatagacacacacaatattattattaaatcaaaata
cataaagcaccttttatattgagaacttaggactgaaggacttgtatgag
aagcatgtgagcatgggcagaaaagtcattttggtagtaagagttcgatg
gagtcattccagaggcttcttgcagaagtgagattctatgaagactttat
gtaaatgctaccactaggtatgactcaatcctctatgattaatccccaga
attctctatgattactataaacagacagtgcaaatgtaaatcctttggtc
ttatggttttaagatcttactataaagccatattccataccatgtgcctt
atgaatggacctctcctttattgagcttggcaagtatggtcttcccattg
ccatctttgctgaatcagtacttctctctgatgaagcattttctgttctg
ctctatagagaggaatgcctctatccatttgctttatggagcaatctagt
tgcctggatggaagagctgtgtttcctagtgatgtgttttggtgcattgt
gggatgctgtatttctaagatggttgatttttgaattggttatcaggctc
attttacatagtttctgcatacaatggtccattcaaatgtacaaatttat
agatttcattttatgggtggagaataaagggctttcagttttaaaaacta
acaattgacaaggtcctgctgcttcctccccgatgaatggcttattaaaa
gcatagttaaattaacaagaaacttgttgttacatgttaatttatcttgg
ggcagaccatgatttggctggttttctttttctatctcactgttaatgaa
tttcatcgaatagatccagaaaagttagctcagatgtgcctggatgtgaa
cagactcccattttt
gaattctcctctgaagaaacagactgggaggaagaagcagctcattatga
gaaaaaagggtaccagccaggtaaagtgctagctaatcagttaaggaagc
caaaagcggctggcgaaggccagtttgctgattggcctcagggcagtcgg
cttcaaggtccgccctatgcggagtccccgccctgcgtagtgcgtcagcc
ctgcgcagagaggcagtgcgcagagaggcagtgcgcagactcattcattc
ccagagaggaacaaaggaaaatacaacaggcatttccggtctttgaagga
gccgagggtgggcgtgtccacgctccggtagaatacttacaaattaaaga
acttgccgagtcggtccgtaaatacggaaccaatgctaattttaccttgg
tgcagttagacaggctcgccggcatggcactaactcctgctgactggcaa
acggttgtaaaagccgctctccctagtatgggcaaatatatggaatggag
agcgctttggcacgaagctgcacaagcgcaggcccgagcaaacgcagctg
ctttgactccagagcagagagattggacttttgacttgttaacgggtcag
ggagcttattctgctgatcagacaaactaccattggggagcttatgccca
gatttcttccacggctattagggcctggaaggcgctctctcgagcaggtg
aaaccactgggcagttaacaaagataatccagggacctcaggaatccttc
tcagattttgtggccagaatgacagaggcagcagagcgtatttttggaga
gtcagagcaagctgcgcctctgatagaacagctaatctatgagcaagcca
caaaggagtgccgagcggccatagccccaagaaagaacaaaggcttacaa
gactggctcaggtctgtcgagagcttgggggacctctcaccatgcaggct
tagcggcgcatcctccaatctcagaaccgcttcatgagcagaaatgatca
gaggacatgtttatttgcggaaagctggcattttaagaaagattgcagag
ctccagataaacaggaggactcctcactctttgctcttagtgtgtggcca
agttatctatgaggctggacaggtgtccctcttgggagggaattaaggca
agtcctttcctccactgtaagtcatcacgtatgtgcataacgttcattgc
ctctggttaccagaggcccttcagatattgggatactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_48723461_48724589
seq2: B6Ng01-162A11.b_47_1161

seq1  GAATTCCCAGTACCCATATAAAAATCAAGAGTGCTGGCATTCAGCTGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGTACCCATATAAAAATCAAGAGTGCTGGCATTCAGCTGTAA  50

seq1  TCCTGGTATAGAGGAAAGGGAAGAATAAAGATAGGAGCATTCCCAGCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTATAGAGGAAAGGGAAGAATAAAGATAGGAGCATTCCCAGCACT  100

seq1  TTCTGGCCAGATGGTCCAACTGATTAGTAAGCTCTGTGCTTAGAGCAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCCAGATGGTCCAACTGATTAGTAAGCTCTGTGCTTAGAGCAAGA  150

seq1  CCCTGTCAACCTCTGGCCCATACAGGCATGTGTGTACACATGTACCCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCAACCTCTGGCCCATACAGGCATGTGTGTACACATGTACCCACA  200

seq1  CAAGTACTTACACACATAGACACACACAATATTATTATTAAATCAAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTACTTACACACATAGACACACACAATATTATTATTAAATCAAAATA  250

seq1  CATAAAGCACCTTTTATATTGAGAACTTAGGACTGAAGGACTTGTATGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGCACCTTTTATATTGAGAACTTAGGACTGAAGGACTTGTATGAG  300

seq1  AAGCATGTGAGCATGGGCAGAAAAGTCATTTTGGTAGTAAGAGTTCGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGTGAGCATGGGCAGAAAAGTCATTTTGGTAGTAAGAGTTCGATG  350

seq1  GAGTCATTCCAGAGGCTTCTTGCAGAAGTGAGATTCTATGAAGACTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCATTCCAGAGGCTTCTTGCAGAAGTGAGATTCTATGAAGACTTTAT  400

seq1  GTAAATGCTACCACTAGGTATGACTCAATCCTCTATGATTAATCCCCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGCTACCACTAGGTATGACTCAATCCTCTATGATTAATCCCCAGA  450

seq1  ATTCTCTATGATTACTATAAACAGACAGTGCAAATGTAAATCCTTTGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTATGATTACTATAAACAGACAGTGCAAATGTAAATCCTTTGGTC  500

seq1  TTATGGTTTTAAGATCTTACTATAAAGCCATATTCCATACCATGTGCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTTTTAAGATCTTACTATAAAGCCATATTCCATACCATGTGCCTT  550

seq1  ATGAATGGACCTCTCCTTTATTGAGCTTGGCAAGTATGGTCTTCCCATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGGACCTCTCCTTTATTGAGCTTGGCAAGTATGGTCTTCCCATTG  600

seq1  CCATCTTTGCTGAATCAGTACTTCTCTCTGATGAAGCATTTTCTGTTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTTGCTGAATCAGTACTTCTCTCTGATGAAGCATTTTCTGTTCTG  650

seq1  CTCTATAGAGAGGAATGCCTCTATCCATTTGCTTTATGGAGCAATCTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATAGAGAGGAATGCCTCTATCCATTTGCTTTATGGAGCAATCTAGT  700

seq1  TGCCTGGATGGAAGAGCTGTGTTTCCTAGTGATGTGTTTTGGTGCATTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGATGGAAGAGCTGTGTTTCCTAGTGATGTGTTTTGGTGCATTGT  750

seq1  GGGATGCTGTATTTCTAAGATGGTTGATTTTTGAATTGGTTATCAGGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGCTGTATTTCTAAGATGGTTGATTTTTGAATTGGTTATCAGGCTC  800

seq1  ATTTTACATAGTTTCTGCATACAATGGTCCATTCAAATGTACAAATTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACATAGTTTCTGCATACAATGGTCCATTCAAATGTACAAATTTAT  850

seq1  AGATTTCATTTTATGGGTGGAGAATAAAGGGCTTTCAGTTTTAAAAACTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCATTTTATGGGTGGAGAATAAAGGGCTTTCAGTTTTAAAAACTA  900

seq1  ACAATTGACAAGGTCCTGCTGCTTCCTCCCCGATGAATGGCTTATTAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTGACAAGGTCCTGCTGCTTCCTCCCCGATGAATGGCTTATTAAAA  950

seq1  GCATAGTTAAATTAACAAGAAACTTGTTGTAACATGTTAATTTATCTTTG  1000
      |||||||||||||||||||||||||||||| ||||||||||||||| |||
seq2  GCATAGTTAAATTAACAAGAAACTTGTTGTTACATGTTAATTTATC-TTG  999

seq1  GGGCAGGACCATGATTTGGCTGGTATTTCTTTTTCTTATCTCACTGTTAA  1050
      ||||| |||||||||||||||||| |||||||||| |||||||||||| |
seq2  GGGCA-GACCATGATTTGGCTGGT-TTTCTTTTTC-TATCTCACTGTT-A  1045

seq1  ATGAATTTTCATCGTATTAGATCCAGACAAGGTTTAGCTCAGATGGTGCC  1100
      ||||| |||||||| | |||||||||| |||  ||||||||||| |||||
seq2  ATGAA-TTTCATCG-AATAGATCCAGAAAAG--TTAGCTCAGAT-GTGCC  1090

seq1  TTGGATGTGACACAGCACCTCACATTTTT  1129
       ||||||||| ||||   ||| |||||||
seq2  -TGGATGTGA-ACAG--ACTCCCATTTTT  1115