BAC Information

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BAC

Clone NameB6Ng01-162M01
Chromosome18 (Build37)
Map Location 22,050,152 - 22,172,695
singlet/doubletdoublet
Overlap gene4921528I01Rik
Upstream geneD030074E01Rik, Rnf125, Rnf138, Mep1b, EG622978, Gm944, LOC665722, LOC225264, Klhl14
Downstream geneLOC546708, LOC100040547, Asxl3, Nol4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162M01.bB6Ng01-162M01.g
ACCDH955511DH955512
length9871,142
definitionDH955511|Mus musculus domesticus DNA, BAC clone: B6Ng01-162M01, 5' end.DH955512|Mus musculus domesticus DNA, BAC clone: B6Ng01-162M01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,050,152 - 22,051,146)(22,171,532 - 22,172,695)
sequence
gaattctagatgatgtatatatatcaaagtgtaaaaaacaaacacattca
gctaatatttagtccactaagatatcaaaatattccaatggttgttatca
gatatgattttagtatgaagtgtcccccacaaacttctctggtggtgctg
ggccagaaagtgatgaaaatcttagggggtggttttcttccttccataag
gtcacacctagcctaaaaatgccacatctcctaagtgtgctttttcccat
gggccaactatattcaaactgtcacaaggccaatcacatggagacatttt
ctgaattgaagttccttcttcctcagttgagattcatctgtgtcttttgt
ttttgtttttgtttttgttttcccttttctcttttctttcctttcccttt
ctttctttctttctttctttctttctttctttctttctttctttctttct
ttctttctttctttcttccttccttccttccttccttccttccttcctgt
ctgtctgtctttctttctctcttttcttttcttttcttttcttttctttt
cttttcttttcttttcttttctttctttctttctttctttctttctttct
ttctttctttcttttttttttgtttttttgagacagggtttctctgtata
gccctggctgtcctagaactcactttgtagaccaggctggcctcgatctc
agaaatctacctgtctctgcttcccaagtgctgggattaaaggtgtgtgc
tacaacagcccagccttgttttctttttcttttcttttttgttgttggag
agagagagagagagagagagagagagagagagagagagagagagactgag
agacagagagggagagagagaatgaatcagttttccttgggaacaagctg
ctaataaattttccagcccaacctagtggtcaacctaaaacatgcacata
aacaacactagagttgttggttttcctctgtgtgtgt
gaattcaaacctgcaccatcagaaagatgattatgtggaaatagataaaa
gtattatgacaatactcaaatggtaaattgtgaccctcttccaattacca
gaaatattaatggttattataaaaaagaaaataaccacatattctgttgt
ctcaataatggaaaattgacacataatgaatccatgaagcaggggaattg
acacaggaatttccctagcatgaataattctccttactgataaagaaacc
attttaatgtcatgaaagttcttatcatgagaaacatgattcacacaatg
aatgtctcctttacaagtgtctctgctatgattaagtttcagttagcgac
acataataacgtgagtttggtgcatcgttttcctaaaatctgcggctgat
tgagaaaagaactttttaagtttaaggacaggtgacaagaagttctgatt
ttgtatcaatgaacatggtagctttatgaagacctagctctgaagttatc
ataagcacttagaaatcaggagaatgctgctaagtggagtagtggttctt
aaatatcactaaacaattctgaatagttgatgtactgaagaacttttcct
tctctttgcatctttctgctcagtatcataattattgctaatacaatgtt
gaacctccatgtgaaattggaatagaatagaaaaaatgggccaccatttt
tggttttattttcccacagcagctcagaggcacctcttacagtctctggc
tatctgccttttcaaatttgctatgcctagttttctatgtaacgataata
ctttgtgaacatagtttacatattaaacttttacggttgctttgcattct
tcagtaaattgacattttttgtggtgcctcgtccactgcatgctatcagt
aaaatacataatttcttaagtttttataacatatattaattatgcattat
ggcagctcattatgacattcccatacatgcacataatgcatttgatagta
tccacacctcattagccctgcacaagcaaacacagtgtacatatcataac
ccagagttagaaggatcctgcactcatggcagagagctcattgcatcatt
atgtctagctttgtttacagaactgtctcaagaataggtgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_22050152_22051146
seq2: B6Ng01-162M01.b_36_1022

seq1  GAATTCTAGATGATGTATATATATCAAAGTGTAAAAAACAAACACATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGATGATGTATATATATCAAAGTGTAAAAAACAAACACATTCA  50

seq1  GCTAATATTTAGTCCACTAAGATATCAAAATATTCCAATGGTTGTTATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATATTTAGTCCACTAAGATATCAAAATATTCCAATGGTTGTTATCA  100

seq1  GATATGATTTTAGTATGAAGTGTCCCCCACAAACTTCTCTGGTGGTGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGATTTTAGTATGAAGTGTCCCCCACAAACTTCTCTGGTGGTGCTG  150

seq1  GGCCAGAAAGTGATGAAAATCTTAGGGGGTGGTTTTCTTCCTTCCATAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGAAAGTGATGAAAATCTTAGGGGGTGGTTTTCTTCCTTCCATAAG  200

seq1  GTCACACCTAGCCTAAAAATGCCACATCTCCTAAGTGTGCTTTTTCCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACACCTAGCCTAAAAATGCCACATCTCCTAAGTGTGCTTTTTCCCAT  250

seq1  GGGCCAACTATATTCAAACTGTCACAAGGCCAATCACATGGAGACATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAACTATATTCAAACTGTCACAAGGCCAATCACATGGAGACATTTT  300

seq1  CTGAATTGAAGTTCCTTCTTCCTCAGTTGAGATTCATCTGTGTCTTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTGAAGTTCCTTCTTCCTCAGTTGAGATTCATCTGTGTCTTTTGT  350

seq1  TTTTGTTTTTGTTTTTGTTTTCCCTTTTCTCTTTTCTTTCCTTTCC----  396
      ||||||||||||||||||||||||||||||||||||||||||||||    
seq2  TTTTGTTTTTGTTTTTGTTTTCCCTTTTCTCTTTTCTTTCCTTTCCCTTT  400

seq1  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  450

seq1  TTCTTTCTTTCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTGT  500

seq1  CTGTCTGTCTTTCTTTCTCTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTCTTTCTTTCTCTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTT  550

seq1  CTTTTCTTTTCTTTTCTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTTCTTTTCTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  600

seq1  TTCTTTCTTTCTTTTTTTTTTGTTTTTTTGAGACAGGGTTTCTCTGTATA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTTTTTTTTGTTTTTTTGAGACAGGGTTTCTCTGTATA  650

seq1  GCCCTGGCTGTCCTAGAACTCACTTTGTAGACCAGGCTGGCCTCGATCTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGCTGTCCTAGAACTCACTTTGTAGACCAGGCTGGCCTCGATCTC  700

seq1  AGAAATCTACCTGTCTCTGCTTCCCAAGTGCTGGGATTAAAGGTGTGTGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCTACCTGTCTCTGCTTCCCAAGTGCTGGGATTAAAGGTGTGTGC  750

seq1  TACAACAGCCCAGCCTTGTTTTCTTTTTCTTTTCTTTTTTGTTGTTGGAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACAGCCCAGCCTTGTTTTCTTTTTCTTTTCTTTTTTGTTGTTGGAG  800

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTGAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTGAG  850

seq1  AGACAGAGAGGGAGAGAGAGAATGAATCAGTTTTCCTTGGGAACAAGCTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGACAGAGAGGGAGAGAGAGAATGAATCAGTTTTCCTTGGGAACAAGCT-  899

seq1  GCCTAATAAATTTTCCAGCCCCAACCCTAGTGGTCAACCCTAAAAACATG  946
        |||||||||||||||||||  | ||||||||||||||   ||||||||
seq2  -GCTAATAAATTTTCCAGCCC--AACCTAGTGGTCAACC--TAAAACATG  944

seq1  CACATAAAACAACACTAGGAGGTTTGTTGGGTTTTCTCTCTGTGTGTGT  995
      ||||| ||||||||||| |||  ||||| ||||||| ||||||||||||
seq2  CACAT-AAACAACACTA-GAG--TTGTT-GGTTTTC-CTCTGTGTGTGT  987

seq1: chr18_22171532_22172695
seq2: B6Ng01-162M01.g_63_1204 (reverse)

seq1  TCCACCTTATTCTTTGAGACAGGTTCTGT-AACAGAGCCTAGACATTAAT  49
      |||||| ||||| |||||||| ||||||| |||| || ||||||| ||||
seq2  TCCACC-TATTC-TTGAGACA-GTTCTGTAAACAAAG-CTAGACA-TAAT  45

seq1  GATGCAAATGAGCTCTCTGCCCATTGAGTTGCAGGGATCTGTCCTTAACT  99
      ||||| |||||||||||||||   |||| |||| |||||  ||  |||||
seq2  GATGC-AATGAGCTCTCTGCC--ATGAG-TGCA-GGATCCTTC--TAACT  88

seq1  CTTGGGTTATGGATATGTACCACTGTGTTTGGCTTGTGCAGGGCTAATGA  149
      | |||||||| |||||||| |||||||||| |||||||||||||||||||
seq2  C-TGGGTTAT-GATATGTA-CACTGTGTTT-GCTTGTGCAGGGCTAATGA  134

seq1  GGTGTGGATACTATCAAAATGCATTATGTGCATGTATGGGAATGTCATAA  199
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGTGTGGATACTATC-AAATGCATTATGTGCATGTATGGGAATGTCATAA  183

seq1  TGAAGCCTGCCATAATGCATAATTAATATATGTTAATAAAAAACCTTAAG  249
      |||   |||||||||||||||||||||||||||| |||||||  ||||||
seq2  TGA--GCTGCCATAATGCATAATTAATATATGTT-ATAAAAA--CTTAAG  228

seq1  AAATTATGTATTTTTACTGATAGCATGCAGTGGACGAGGCACCACAAAAA  299
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAATTATGTA-TTTTACTGATAGCATGCAGTGGACGAGGCACCACAAAAA  277

seq1  ATGTCAATTTACTGAAGAATGCAAAGCAACCGTAAAAGTTTAATATGTAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAATTTACTGAAGAATGCAAAGCAACCGTAAAAGTTTAATATGTAA  327

seq1  ACTATGTTCACAAAGTATTATCGTTACATAGAAAACTAGGCATAGCAAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTTCACAAAGTATTATCGTTACATAGAAAACTAGGCATAGCAAAT  377

seq1  TTGAAAAGGCAGATAGCCAGAGACTGTAAGAGGTGCCTCTGAGCTGCTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAGGCAGATAGCCAGAGACTGTAAGAGGTGCCTCTGAGCTGCTGT  427

seq1  GGGAAAATAAAACCAAAAATGGTGGCCCATTTTTTCTATTCTATTCCAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAATAAAACCAAAAATGGTGGCCCATTTTTTCTATTCTATTCCAAT  477

seq1  TTCACATGGAGGTTCAACATTGTATTAGCAATAATTATGATACTGAGCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATGGAGGTTCAACATTGTATTAGCAATAATTATGATACTGAGCAG  527

seq1  AAAGATGCAAAGAGAAGGAAAAGTTCTTCAGTACATCAACTATTCAGAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGCAAAGAGAAGGAAAAGTTCTTCAGTACATCAACTATTCAGAAT  577

seq1  TGTTTAGTGATATTTAAGAACCACTACTCCACTTAGCAGCATTCTCCTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGTGATATTTAAGAACCACTACTCCACTTAGCAGCATTCTCCTGA  627

seq1  TTTCTAAGTGCTTATGATAACTTCAGAGCTAGGTCTTCATAAAGCTACCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAGTGCTTATGATAACTTCAGAGCTAGGTCTTCATAAAGCTACCA  677

seq1  TGTTCATTGATACAAAATCAGAACTTCTTGTCACCTGTCCTTAAACTTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATTGATACAAAATCAGAACTTCTTGTCACCTGTCCTTAAACTTAA  727

seq1  AAAGTTCTTTTCTCAATCAGCCGCAGATTTTAGGAAAACGATGCACCAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCTTTTCTCAATCAGCCGCAGATTTTAGGAAAACGATGCACCAAA  777

seq1  CTCACGTTATTATGTGTCGCTAACTGAAACTTAATCATAGCAGAGACACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGTTATTATGTGTCGCTAACTGAAACTTAATCATAGCAGAGACACT  827

seq1  TGTAAAGGAGACATTCATTGTGTGAATCATGTTTCTCATGATAAGAACTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGGAGACATTCATTGTGTGAATCATGTTTCTCATGATAAGAACTT  877

seq1  TCATGACATTAAAATGGTTTCTTTATCAGTAAGGAGAATTATTCATGCTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGACATTAAAATGGTTTCTTTATCAGTAAGGAGAATTATTCATGCTA  927

seq1  GGGAAATTCCTGTGTCAATTCCCCTGCTTCATGGATTCATTATGTGTCAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATTCCTGTGTCAATTCCCCTGCTTCATGGATTCATTATGTGTCAA  977

seq1  TTTTCCATTATTGAGACAACAGAATATGTGGTTATTTTCTTTTTTATAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCATTATTGAGACAACAGAATATGTGGTTATTTTCTTTTTTATAAT  1027

seq1  AACCATTAATATTTCTGGTAATTGGAAGAGGGTCACAATTTACCATTTGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTAATATTTCTGGTAATTGGAAGAGGGTCACAATTTACCATTTGA  1077

seq1  GTATTGTCATAATACTTTTATCTATTTCCACATAATCATCTTTCTGATGG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGTCATAATACTTTTATCTATTTCCACATAATCATCTTTCTGATGG  1127

seq1  TGCAGGTTTGAATTC  1164
      |||||||||||||||
seq2  TGCAGGTTTGAATTC  1142