BAC Information

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BAC

Clone NameB6Ng01-163E20
Chromosome18 (Build37)
Map Location 42,107,091 - 42,202,255
singlet/doubletdoublet
Overlap genePrelid2, Gm851
Upstream geneLOC677182, LOC100041988, LOC100041997
Downstream geneSh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27, Pou4f3, LOC100042767, LOC100042027, Tcerg1, Gpr151, LOC100042037, Ppp2r2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163E20.bB6Ng01-163E20.g
ACCDH955925DH955926
length1,1031,240
definitionDH955925|Mus musculus domesticus DNA, BAC clone: B6Ng01-163E20, 5' end.DH955926|Mus musculus domesticus DNA, BAC clone: B6Ng01-163E20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,201,147 - 42,202,255)(42,107,091 - 42,108,320)
sequence
gaattcagtgtcaccctggactacatgagaccctgtctaaacaatcatgt
gtgatatatgggatgggaataataacaccctatggagctgttgtgtacct
acatacaaaagatgctcataaaacgcttcaaagagtgtgacacagggtga
atgctccatcgaggttatccattatccccacacctggcctcttattattt
atcaggctgcatctaaaatacagtttaaaactgagcctaactcctgactt
ttaccaaagctgttattcgtatggcctttcaatgactgtcagtccacaaa
gtggctgcctcgaggcttacatggtcttgggcactgcggcactcactctg
tagaagtttaattggggtgtggtgtggttggctgtgtgctagaataaaca
atagcagttatcattattttgctaggttctgagctaagatcataaacctc
attttacagatgaggaaataaagtcctagagaggttatttgtgctccaac
gtctacgaagggaacccaggattcagaccgactggccttcttgtatcccg
tgtaatgtagctgtaatacgaaaagggcatggtattgcaaccagtaacat
ctatagtagctttgatcccagagttttattttggttcagacagtagagtt
cagtccttggaactgtaacagtaacttcgggttaatttatagcaagaaga
aagggaaatacgcctgggacagaaaaggagagaatgaagaagaagcggct
ggctatggcctgcacatctatcatctcagcacttagcaggctgggccaga
agggctgagaggcggccaacctgggctacctcaggaaaccttgtccaaga
aaacagagcaacatgccagaacagtaaatcatggctagttgatacactac
atttggattaaaaaatcatttatttttacattaaaatagagactcccaca
gaagtaaacagaattgtcttgttttgttttatgcccaatttttgtttgta
aatacttttcagcttcaagtctaaaataatttgttccgttaggtctgacc
ctcaactgtgggttttacctttgggttggaataacatttgaaaggacaaa
aaa
gaattcctttttgttaatattttggtttaatttgtttggttttgggtttt
ctgggacagggtctagctatgtagctcaggctggctacgaactgctgatc
gtcccgcctcagactcaccaatggcctgggatacatgcatgagccacctg
ggtccttccatagttcttaaacatgccaagcacttagctgactatcttat
aagaatggcatcagataccgaatgttcttgtataaatgaccttagccaca
ccacactaaatccaaccacatgagttcagtcaacccacagaatcaccaga
attaaaagcctgtcactgggcaaggccactaagttttagagtgatttgtt
gcacagaaatggctagcaaataccgtgtcccacccgcacacatctaagct
aagcatcatattaggtgcagagtccatccagatgaacaaactatgagagg
caaatgaaccaaagggtactacacccagcaaaactgaggcctgagccgct
gctctgtccccagactctcctgcatggcccctgtgtgcagagctggaagc
gcagcctgctggtgaaccatgggctttagattcagttgagctgagatcct
ggctctccgacctgctagctgggactgctgggaaagttacttagacttct
gagactatttccccacgacgtgagtcagtcatgacgatttcttagcctgc
ttggaggatagtactgtattatacagcgcaaacgtgtataaggagagaga
aacagacagagacagagacagagacagagacagagacagagacagagaga
gtgccaagaaaactcctattcagccgggtggtggtgacacacgcctttta
tccagcactcggggaggcagaggcaggcagatttctgagttcgaggccag
cctggtctacagagtgagttccaggacagccagggctacaccagagaact
gtcccgaaaacccaaaaaaaaaaaaaaaaagaaggaaagaaagaaagaag
taaagaaaactcctattcttgttttcagccaaacctggaaggggtcacct
tactgagaaagcctgcctacctcccaaagcctccatgtagggctgcgcta
taggccaccctaccccaaccctcccatcgtgaagctccttggtgtgaagg
ttggctctaccactgttgaaatatgccgcacccacattatttataccttg
tgccctccccctctaaaaaccagctcaccttttcacctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_42201147_42202255
seq2: B6Ng01-163E20.b_42_1144 (reverse)

seq1  TTTTTTGTCATTCACACTGTTAGTCCAACCCAAAGATAAAA-CCACAGAT  49
      ||||||||| ||   | ||||| |||||||||||| ||||| |||||| |
seq2  TTTTTTGTCCTTTCAAATGTTATTCCAACCCAAAGGTAAAACCCACAGTT  50

seq1  AGAAGAGTCAGACCTAACGGAACAAATATTTTTCAGACTTGAAGCTGAAA  99
         || ||||||||||||||||||||| | ||| ||||||||||||||||
seq2  --GAGGGTCAGACCTAACGGAACAAAT-TATTTTAGACTTGAAGCTGAAA  97

seq1  AGTAATTTACAGACAAAAATTGGGCATAAAAACAAAACAAGACAATTCTG  149
      ||| ||||||| ||||||||||||||| ||||||||||||||||||||||
seq2  AGT-ATTTACAAACAAAAATTGGGCAT-AAAACAAAACAAGACAATTCTG  145

seq1  TTTACTTCTGTGGGAGTCTCTATTTTTAATGTAAAAATAAATGATTTTTT  199
      |||||||||||||||||||||| ||||||||||||||||||||| |||||
seq2  TTTACTTCTGTGGGAGTCTCTA-TTTTAATGTAAAAATAAATGA-TTTTT  193

seq1  TAATCCAAATGTAGTGTATCAACTAGCCATGATTTACTGTTCTGGCATGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCAAATGTAGTGTATCAACTAGCCATGATTTACTGTTCTGGCATGT  243

seq1  TGCTCTGTTTTCTTGGACAAGGTTTCCTGAGGTAGCCCAGGTTGGCCGCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGTTTTCTTGGACAAGGTTTCCTGAGGTAGCCCAGGTTGGCCGCC  293

seq1  TCTCAGCCCTTCTGGCCCAGCCTGCTAAGTGCTGAGATGATAGATGTGCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCCCTTCTGGCCCAGCCTGCTAAGTGCTGAGATGATAGATGTGCA  343

seq1  GGCCATAGCCAGCCGCTTCTTCTTCATTCTCTCCTTTTCTGTCCCAGGCG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATAGCCAGCCGCTTCTTCTTCATTCTCTCCTTTTCTGTCCCAGGCG  393

seq1  TATTTCCCTTTCTTCTTGCTATAAATTAACCCGAAGTTACTGTTACAGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCCTTTCTTCTTGCTATAAATTAACCCGAAGTTACTGTTACAGTT  443

seq1  CCAAGGACTGAACTCTACTGTCTGAACCAAAATAAAACTCTGGGATCAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGACTGAACTCTACTGTCTGAACCAAAATAAAACTCTGGGATCAAA  493

seq1  GCTACTATAGATGTTACTGGTTGCAATACCATGCCCTTTTCGTATTACAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTATAGATGTTACTGGTTGCAATACCATGCCCTTTTCGTATTACAG  543

seq1  CTACATTACACGGGATACAAGAAGGCCAGTCGGTCTGAATCCTGGGTTCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTACACGGGATACAAGAAGGCCAGTCGGTCTGAATCCTGGGTTCC  593

seq1  CTTCGTAGACGTTGGAGCACAAATAACCTCTCTAGGACTTTATTTCCTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGTAGACGTTGGAGCACAAATAACCTCTCTAGGACTTTATTTCCTCA  643

seq1  TCTGTAAAATGAGGTTTATGATCTTAGCTCAGAACCTAGCAAAATAATGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAAATGAGGTTTATGATCTTAGCTCAGAACCTAGCAAAATAATGA  693

seq1  TAACTGCTATTGTTTATTCTAGCACACAGCCAACCACACCACACCCCAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGCTATTGTTTATTCTAGCACACAGCCAACCACACCACACCCCAAT  743

seq1  TAAACTTCTACAGAGTGAGTGCCGCAGTGCCCAAGACCATGTAAGCCTCG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTCTACAGAGTGAGTGCCGCAGTGCCCAAGACCATGTAAGCCTCG  793

seq1  AGGCAGCCACTTTGTGGACTGACAGTCATTGAAAGGCCATACGAATAACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCCACTTTGTGGACTGACAGTCATTGAAAGGCCATACGAATAACA  843

seq1  GCTTTGGTAAAAGTCAGGAGTTAGGCTCAGTTTTAAACTGTATTTTAGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGTAAAAGTCAGGAGTTAGGCTCAGTTTTAAACTGTATTTTAGAT  893

seq1  GCAGCCTGATAAATAATAAGAGGCCAGGTGTGGGGATAATGGATAACCTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTGATAAATAATAAGAGGCCAGGTGTGGGGATAATGGATAACCTC  943

seq1  GATGGAGCATTCACCCTGTGTCACACTCTTTGAAGCGTTTTATGAGCATC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGCATTCACCCTGTGTCACACTCTTTGAAGCGTTTTATGAGCATC  993

seq1  TTTTGTATGTAGGTACACAACAGCTCCATAGGGTGTTATTATTCCCATCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTATGTAGGTACACAACAGCTCCATAGGGTGTTATTATTCCCATCC  1043

seq1  CATATATCACACATGATTGTTTAGACAGGGTCTCATGTAGTCCAGGGTGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATCACACATGATTGTTTAGACAGGGTCTCATGTAGTCCAGGGTGA  1093

seq1  CACTGAATTC  1109
      ||||||||||
seq2  CACTGAATTC  1103

seq1: chr18_42107091_42108320
seq2: B6Ng01-163E20.g_67_1306

seq1  GAATTCCTTTTTGTTAATATTTTGGTTTAATTTGTTTGGTTTTGGGTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTTTGTTAATATTTTGGTTTAATTTGTTTGGTTTTGGGTTTT  50

seq1  CTGGGACAGGGTCTAGCTATGTAGCTCAGGCTGGCTACGAACTGCTGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACAGGGTCTAGCTATGTAGCTCAGGCTGGCTACGAACTGCTGATC  100

seq1  GTCCCGCCTCAGACTCACCAATGGCCTGGGATACATGCATGAGCCACCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCGCCTCAGACTCACCAATGGCCTGGGATACATGCATGAGCCACCTG  150

seq1  GGTCCTTCCATAGTTCTTAAACATGCCAAGCACTTAGCTGACTATCTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTTCCATAGTTCTTAAACATGCCAAGCACTTAGCTGACTATCTTAT  200

seq1  AAGAATGGCATCAGATACCGAATGTTCTTGTATAAATGACCTTAGCCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGGCATCAGATACCGAATGTTCTTGTATAAATGACCTTAGCCACA  250

seq1  CCACACTAAATCCAACCACATGAGTTCAGTCAACCCACAGAATCACCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTAAATCCAACCACATGAGTTCAGTCAACCCACAGAATCACCAGA  300

seq1  ATTAAAAGCCTGTCACTGGGCAAGGCCACTAAGTTTTAGAGTGATTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAGCCTGTCACTGGGCAAGGCCACTAAGTTTTAGAGTGATTTGTT  350

seq1  GCACAGAAATGGCTAGCAAATACCGTGTCCCACCCGCACACATCTAAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGAAATGGCTAGCAAATACCGTGTCCCACCCGCACACATCTAAGCT  400

seq1  AAGCATCATATTAGGTGCAGAGTCCATCCAGATGAACAAACTATGAGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCATATTAGGTGCAGAGTCCATCCAGATGAACAAACTATGAGAGG  450

seq1  CAAATGAACCAAAGGGTACTACACCCAGCAAAACTGAGGCCTGAGCCGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAACCAAAGGGTACTACACCCAGCAAAACTGAGGCCTGAGCCGCT  500

seq1  GCTCTGTCCCCAGACTCTCCTGCATGGCCCCTGTGTGCAGAGCTGGAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTCCCCAGACTCTCCTGCATGGCCCCTGTGTGCAGAGCTGGAAGC  550

seq1  GCAGCCTGCTGGTGAACCATGGGCTTTAGATTCAGTTGAGCTGAGATCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTGCTGGTGAACCATGGGCTTTAGATTCAGTTGAGCTGAGATCCT  600

seq1  GGCTCTCCGACCTGCTAGCTGGGACTGCTGGGAAAGTTACTTAGACTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCCGACCTGCTAGCTGGGACTGCTGGGAAAGTTACTTAGACTTCT  650

seq1  GAGACTATTTCCCCACGACGTGAGTCAGTCATGACGATTTCTTAGCCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTATTTCCCCACGACGTGAGTCAGTCATGACGATTTCTTAGCCTGC  700

seq1  TTGGAGGATAGTACTGTATTATACAGCGCAAACGTGTATAAGGAGAGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGATAGTACTGTATTATACAGCGCAAACGTGTATAAGGAGAGAGA  750

seq1  AACAGACAGAGACAGAGACAGAGACAGAGACAGAGACAGAGACAGAGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACAGAGACAGAGACAGAGACAGAGACAGAGACAGAGACAGAGAGA  800

seq1  GTGCCAAGAAAACTCCTATTCAGCCGGGTGGTGGTGACACACGCCTTTAA  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTGCCAAGAAAACTCCTATTCAGCCGGGTGGTGGTGACACACGCCTTTTA  850

seq1  TCCCAGCACTC-GGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCA  899
      | ||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  T-CCAGCACTCGGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCA  899

seq1  GCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACA-CAGAGAAC  948
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACCAGAGAAC  949

seq1  TGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAGAAAGAAAGAAAGAAAGA  998
      |||| || |||||| |||||||||||||||||||| ||||||||||||| 
seq2  TGTCCCG-AAAACCCAAAAAAAAAAAAAAAAAGAAGGAAAGAAAGAAAG-  997

seq1  AAGAAAAGAAAACTCCTATTCATG-TTTCAG-CAAACCT-GAAGGTGTCA  1045
      ||| ||||||||||||||||| || |||||| ||||||| ||||| ||||
seq2  AAGTAAAGAAAACTCCTATTCTTGTTTTCAGCCAAACCTGGAAGGGGTCA  1047

seq1  CTTTACTGAGAAAGCCTGCCTACCTACCAAAGCCTCCATGTAGGACT--G  1093
      | ||||||||||||||||||||||| |||||||||||||||||| ||  |
seq2  CCTTACTGAGAAAGCCTGCCTACCTCCCAAAGCCTCCATGTAGGGCTGCG  1097

seq1  CTATA-GCCACCCTACCCC-ACCCTCCCATCCTGTATGCTCCTT-GTGTG  1140
      ||||| ||||||||||||| ||||||||||| || | ||||||| |||||
seq2  CTATAGGCCACCCTACCCCAACCCTCCCATCGTG-AAGCTCCTTGGTGTG  1146

seq1  AAGTATGCATC-ACC-CT-TTGAAATAACGCCAGCATCATCATTATTTAT  1187
      |||  ||  || ||| || ||||||| | ||| ||| |  ||||||||||
seq2  AAGGTTGGCTCTACCACTGTTGAAAT-ATGCC-GCACCCACATTATTTAT  1194

seq1  TACTCTTGCTCTCCCTTTCTAAAAACC-CATCACCTTT--ACCTGA  1230
        ||  ||| |||||  ||||||||||   ||||||||  ||||||
seq2  ACCTTGTGCCCTCCCCCTCTAAAAACCAGCTCACCTTTTCACCTGA  1240