BAC Information

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BAC

Clone NameB6Ng01-163K17
Chromosome18 (Build37)
Map Location 79,011,017 - 79,123,185
singlet/doubletdoublet
Overlap geneSetbp1
Upstream geneAtp5a1, Pstpip2, 5430411K18Rik, Cd33l3, Slc14a1, Slc14a2, EG620155
Downstream geneLOC100039242, LOC100039250, LOC383311
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163K17.bB6Ng01-163K17.g
ACCDH956198DH956199
length1,141156
definitionDH956198|Mus musculus domesticus DNA, BAC clone: B6Ng01-163K17, 5' end.DH956199|Mus musculus domesticus DNA, BAC clone: B6Ng01-163K17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,122,039 - 79,123,185)(79,011,017 - 79,011,172)
sequence
gaattcagatttctttgctgggggagtcattataacttttgtcgagtacc
aaaaaaggacataacaaaccataatcaagcctgctggattcctctacaaa
tggctttgctcagttctcagtccctgccatggatatgaagaaatgctaca
catttgaagattctttgaatacacttgtaatttatcctcactgtcatgac
tgcagaactaggaaatggatattttagtcgctcgtccctgccagcctggt
gagccagatgggtgggtggccgcagttgaagagcttggaacttttatgag
ctgagtcttatgtactgatgcatattagtggctttatgcctgcatgaagt
ccttgctccatcttccccttttccagctcagtcaaaggcttatgttggta
tcgtattggtaagtcttgaagagaagatgatcattaccaagaaattagag
agccttgaagagagggctagtgtagggtcattgatcaggacataagcatt
atgttactccaggggacgcttttgactaatattctgatactcagcctttt
ccttgtgcccacctcgactctctatagaagataaagcctgttcattgggg
atatataacttcaaccaaaaatgcatgccattcccagtaatgcctggaaa
atattgtttaattttcaatcagattttctcctgggtagaatggagatact
ttctgtctcaggattgatggggattagaaagaaggataaattaaaacaaa
gcataataacacatctatgcgaaaatgtggtagtaaaacctattattttg
ggatgctaactttcaaaatgaataaaaatacattaaaaacagtatatgca
acattaatcagtgtactgggatgaaagtgattcttggtgtgttatattct
cctctctgtgactagaggaagctgagttgccctgtagcatggtacaggat
gccctgtagcatggtacaggatattgagatagcagccccttaccctgatt
ttgttcttcaaactgcctgaagcacttttcctcccccctttttctatttt
caaggttctttcaaattgtttaccaccccacccttgatttttctttcctt
ttcttcaagtctgaaaacaagattcgggtccatctgtctga
cagagaccaggcctgtgctttcaaaacagggccatgtgctggggaggaat
gccgtgtgcttagtcttgtttataacatggtagagggtgcaagaatgtga
tcttcagagacggagagagagagagaaggagagggagagggagagggaga
gggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_79122039_79123185
seq2: B6Ng01-163K17.b_45_1186 (reverse)

seq1  TCAG-CAGATGGACCAGAATCTTGGTCTCAGACTTTGAAGAAAAGGGAAG  49
      |||| |||||||||| |||||||| | |||||| |||||||||||| |||
seq2  TCAGACAGATGGACCCGAATCTTGTTTTCAGAC-TTGAAGAAAAGGAAAG  49

seq1  AAAGATC-AGGGTGGGGTTGGTAAAACAATTTGAAAAGAACCTTTGAAAT  98
      ||| ||| ||||||||| |||| |||||||||| ||||||||||  ||||
seq2  AAAAATCAAGGGTGGGG-TGGT-AAACAATTTG-AAAGAACCTTGAAAAT  96

seq1  AG-AAAAGGGGGGAGGAAAAGGTGCTTCAAGCAGTTTGAAGAACAAAGTC  147
      || ||||||||||||||||| |||||||| ||||||||||||||||| ||
seq2  AGAAAAAGGGGGGAGGAAAA-GTGCTTCAGGCAGTTTGAAGAACAAAATC  145

seq1  AGGGTAAGGGGCTTGCTAATCTCAATATCCTGTACCATGCTACAGGGCAT  197
      |||||||||||| |||| ||||||||||||||||||||||||||||||||
seq2  AGGGTAAGGGGC-TGCT-ATCTCAATATCCTGTACCATGCTACAGGGCAT  193

seq1  CCTGTACCATGCTACAGGGCAACCTCAGCCTTCCTCTAGTCACAGAGAGG  247
      |||||||||||||||||||||| ||||| |||||||||||||||||||||
seq2  CCTGTACCATGCTACAGGGCAA-CTCAG-CTTCCTCTAGTCACAGAGAGG  241

seq1  AGATTATAACACACCAAGAATCACTTTCATCCCAGTACACTGATTACTGT  297
      ||| |||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGAATATAACACACCAAGAATCACTTTCATCCCAGTACACTGATTAATGT  291

seq1  TGCATATACTGTTTTTAATGTATTTTTATTCATTTTGAAAGTTAGCATCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATACTGTTTTTAATGTATTTTTATTCATTTTGAAAGTTAGCATCC  341

seq1  CAAAATAATAGGTTTTACTACCACATTTTCGCATAGATGTGTTATTATGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAATAGGTTTTACTACCACATTTTCGCATAGATGTGTTATTATGC  391

seq1  TTTGTTTTAATTTATCCTTCTTTCTAATCCCCATCAATCCTGAGACAGAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTAATTTATCCTTCTTTCTAATCCCCATCAATCCTGAGACAGAA  441

seq1  AGTATCTCCATTCTACCCAGGAG-AAATCTGATTG-AAATTAAACAATAT  495
      ||||||||||||||||||||||| ||||||||||| ||||||||||||||
seq2  AGTATCTCCATTCTACCCAGGAGAAAATCTGATTGAAAATTAAACAATAT  491

seq1  TTTCCAGGCATTACTGGGAATGGCATGCATTTTTGGTTGAAGTTATATAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGGCATTACTGGGAATGGCATGCATTTTTGGTTGAAGTTATATAT  541

seq1  CCCCAATGAACAGGCTTTATCTTCTATAGAGAGTCGAGGTGGGCACAAGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAATGAACAGGCTTTATCTTCTATAGAGAGTCGAGGTGGGCACAAGG  591

seq1  AAAAGGCTGAGTATCAGAATATTAGTCAAAAGCGTCCCCTGGAGTAACAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCTGAGTATCAGAATATTAGTCAAAAGCGTCCCCTGGAGTAACAT  641

seq1  AATGCTTATGTCCTGATCAATGACCCTACACTAGCCCTCTCTTCAAGGCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTATGTCCTGATCAATGACCCTACACTAGCCCTCTCTTCAAGGCT  691

seq1  CTCTAATTTCTTGGTAATGATCATCTTCTCTTCAAGACTTACCAATACGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATTTCTTGGTAATGATCATCTTCTCTTCAAGACTTACCAATACGA  741

seq1  TACCAACATAAGCCTTTGACTGAGCTGGAAAAGGGGAAGATGGAGCAAGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAACATAAGCCTTTGACTGAGCTGGAAAAGGGGAAGATGGAGCAAGG  791

seq1  ACTTCATGCAGGCATAAAGCCACTAATATGCATCAGTACATAAGACTCAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATGCAGGCATAAAGCCACTAATATGCATCAGTACATAAGACTCAG  841

seq1  CTCATAAAAGTTCCAAGCTCTTCAACTGCGGCCACCCACCCATCTGGCTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAAAAGTTCCAAGCTCTTCAACTGCGGCCACCCACCCATCTGGCTC  891

seq1  ACCAGGCTGGCAGGGACGAGCGACTAAAATATCCATTTCCTAGTTCTGCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCTGGCAGGGACGAGCGACTAAAATATCCATTTCCTAGTTCTGCA  941

seq1  GTCATGACAGTGAGGATAAATTACAAGTGTATTCAAAGAATCTTCAAATG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGACAGTGAGGATAAATTACAAGTGTATTCAAAGAATCTTCAAATG  991

seq1  TGTAGCATTTCTTCATATCCATGGCAGGGACTGAGAACTGAGCAAAGCCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCATTTCTTCATATCCATGGCAGGGACTGAGAACTGAGCAAAGCCA  1041

seq1  TTTGTAGAGGAATCCAGCAGGCTTGATTATGGTTTGTTATGTCCTTTTTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGAGGAATCCAGCAGGCTTGATTATGGTTTGTTATGTCCTTTTTT  1091

seq1  GGTACTCGACAAAAGTTATAATGGACTCCCCCAGCAAAGAAATCTGAATT  1145
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGTACTCGACAAAAGTTATAAT-GACTCCCCCAGCAAAGAAATCTGAATT  1140

seq1  CC  1147
      ||
seq2  CC  1142

seq1: chr18_79011017_79011172
seq2: B6Ng01-163K17.g_72_227

seq1  CAGAGACCAGGCCTGTGCTTTCAAAACAGGGCCATGTGCTGGGGAGGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACCAGGCCTGTGCTTTCAAAACAGGGCCATGTGCTGGGGAGGAAT  50

seq1  GCCGTGTGCTTAGTCTTGTTTATAACATGGTAGAGGGTGCAAGAATGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTGTGCTTAGTCTTGTTTATAACATGGTAGAGGGTGCAAGAATGTGA  100

seq1  TCTTCAGAGACGGAGAGAGAGAGAGAAGGAGAGGGAGAGGGAGAGGGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGAGACGGAGAGAGAGAGAGAAGGAGAGGGAGAGGGAGAGGGAGA  150

seq1  GGGAGA  156
      ||||||
seq2  GGGAGA  156