BAC Information

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BAC

Clone NameB6Ng01-163M07
Chromosome18 (Build37)17 (Build37)
Map Location 67,775,766 - 67,776,09684,848,217 - 84,849,319
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMc4r, Gnal, Chmp1b, Mppe1, Impa2, B430212C06Rik, Cidea, Tubb6, Afg3l2, Slmo1, Spire1
Downstream geneCep76, Tnfsf5ip1, Ptpn2, Seh1l, LOC667939, D18Ertd653e, 4933403F05Rik, Rnmt, Mc5r, Mc2r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163M07.bB6Ng01-163M07.g
ACCDH956270DH956271
length821,102
definitionDH956270|Mus musculus domesticus DNA, BAC clone: B6Ng01-163M07, 5' end.DH956271|Mus musculus domesticus DNA, BAC clone: B6Ng01-163M07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(67,775,766 - 67,776,096)(84,848,217 - 84,849,319)
sequence
agagatctgcctgtctccttagtgctagaattaaaggcataaagatttta
tgtgcatatgtgcatatgtgtgtgtgtgtgtg
gaattctccttttaagaattattctgcttttgctggggtaatttttttat
ttaatactggtgactaggaaaagtcatagctttattgtttaattagtatt
tctgtttttttttttaccttggacttttaggaaactaaaaggaaactaaa
ttttgttttgttttgttttctgtttttgtttttcgagacagggtttctct
gtgtagccctggctgtcctggaactcactctgtagaccaggctggcctcg
aactcagaaatccgcctgcctctgcctcctgagtgctgggattaaaggcg
tgcgccaccatgcccggcattacttgggtgttttttaagtagaatttttg
acttctgtgtatgtgtatctgaatatgagtacacatgggcccctgcggag
gccagagaggacgtctggctagagttggaagtggctgtggctcatccagt
gtaagttctgggactaaacccagatcttctgcaagagcagccggggttaa
gatggcacatggctgagccatctccccagactctagggagttaactttta
tcaagacagaatttatagacaacttgaacgagatagttaccttttaaaag
gggaattcgataatctgaaaaataaaagattttggtgaaatacagagaag
acacagttttaaactgttttaaaatttattttagttttatgtgtattgtg
tgtgattatatgagttttatgtacaccatgtaaatttatgtgcctgtgga
gctcagaatagggcagcagatccccggaaccaggtttatagatggttgtg
agcctccatttgggggatactgggaagtgaacctgggtcctctgtaagag
caagtactcttgactgctgagtcatctctccagtcccagagttttaaaga
ggcagcttatttctgagcggttgatggcatttcaccaatgcattcttagg
aatttaagcttttttatatagaaagtgttcagcttgtagtcagtgtagct
aataacagagagcttgagctgatggttcttctttctgtacacgaagttcg
aagcgaagattcagaaaaaactggccctctggtgggacacctctgcatgc
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_67775766_67776096
seq2: B6Ng01-163M07.b_50_131 (reverse)

seq1  CACACACACACACACATATATAAAAATAATTTTATAAATCAAATATAAAG  50
                                                        
seq2  --------------------------------------------------  0

seq1  AACAGACCAGGGGCTGGAGAGATGGTTCAGCGGTTAAGAGCACTGACTAC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACA  150
                                                        
seq2  --------------------------------------------------  0

seq1  ACCATCTGTAATGGGATCCGATGCCTTCTTCTGGTGTGACTGAAGACAGC  200
                                                        
seq2  --------------------------------------------------  0

seq1  TACAGGGTGCTCACATACATA-AAATAAATAAATCTTTAAAAAAAAAGAC  249
               | |||| ||| | | |||   | || |  | | ||||    
seq2  ---------CACACACACACACACATATGCACATATGCACATAAAA----  37

seq1  CAGACCAGCCTGTTGGTGAGGAGGGATCAAACAAACCTTTAATCCCAGCC  299
                | ||  ||                 ||||||||     | 
seq2  ----------TCTTTATG-----------------CCTTTAAT----TCT  56

seq1  AGCACTCAGGAGACACAAGCAGGCAGATCTCT  331
      |||||| ||||||      |||||||||||||
seq2  AGCACTAAGGAGA------CAGGCAGATCTCT  82

seq1: chr17_84848217_84849319
seq2: B6Ng01-163M07.g_66_1167 (reverse)

seq1  CAGCATGCAGAGTGGTCCCACACTGAGGG-CAG-TATTTCTGGATCATCT  48
      ||||||||||||  ||||||| | ||||| ||| | |||||| ||| || 
seq2  CAGCATGCAGAGGTGTCCCAC-CAGAGGGCCAGTTTTTTCTGAATCTTC-  48

seq1  GCCTCTGAACTTCATGATACAGGAAG-AGATGCATCAGCTC-AGCTCTCT  96
      || || ||||||| || ||||| ||| |||  ||||||||| ||||||||
seq2  GCTTC-GAACTTCGTG-TACAGAAAGAAGAACCATCAGCTCAAGCTCTCT  96

seq1  GTTATTAGCTACACTGTACTAC-AGCTGAACACTTTCCTATATAAAAAGC  145
      |||||||||||||||| ||||| ||||||||||||| |||||||||||  
seq2  GTTATTAGCTACACTG-ACTACAAGCTGAACACTTT-CTATATAAAAAAG  144

seq1  TTTAAATTCCTAAGAATGCATTGGTGAAATGCCATCAACCGCTCAGAAAA  195
       ||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTTAAATTCCTAAGAATGCATTGGTGAAATGCCATCAACCGCTCAG-AAA  193

seq1  TAAGCTGTCTCTTTAAAACTCTGGGACTGGAGAGATGACTCAGCAGTCAA  245
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGCCTCTTTAAAACTCTGGGACTGGAGAGATGACTCAGCAGTCAA  243

seq1  GAGTACTTGCTCTTACAGAGGACCCAGGTTCACTTCCCAGTATCCCCCAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACTTGCTCTTACAGAGGACCCAGGTTCACTTCCCAGTATCCCCCAA  293

seq1  ATGGAGGCTCACAACCATCTATAAACCTGGTTCCGGGGATCTGCTGCCCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGCTCACAACCATCTATAAACCTGGTTCCGGGGATCTGCTGCCCT  343

seq1  ATTCTGAGCTCCACAGGCACATAAATTTACATGGTGTACAT-AAACTCAT  394
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATTCTGAGCTCCACAGGCACATAAATTTACATGGTGTACATAAAACTCAT  393

seq1  ATAATCACACACAATACACATAAAACTAAAATAAATTTTAAAACAGTTTA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCACACACAATACACATAAAACTAAAATAAATTTTAAAACAGTTTA  443

seq1  AAACTGTGTCTTCTCTGTATTTCACCAAAATCTTTTATTTTTCAGATTAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTGTCTTCTCTGTATTTCACCAAAATCTTTTATTTTTCAGATTAT  493

seq1  CGAATTCCCCTTTTAAAAGGTAACTATCTCGTTCAAGTTGTCTATAAATT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATTCCCCTTTTAAAAGGTAACTATCTCGTTCAAGTTGTCTATAAATT  543

seq1  CTGTCTTGATAAAAGTTAACTCCCTAGAGTCTGGGGAGATGGCTCAGCCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTGATAAAAGTTAACTCCCTAGAGTCTGGGGAGATGGCTCAGCCA  593

seq1  TGTGCCATCTTAACCCCGGCTGCTCTTGCAGAAGATCTGGGTTTAGTCCC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCATCTTAACCCCGGCTGCTCTTGCAGAAGATCTGGGTTTAGTCCC  643

seq1  AGAACTTACACTGGATGAGCCACAGCCACTTCCAACTCTAGCCAGACGTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTACACTGGATGAGCCACAGCCACTTCCAACTCTAGCCAGACGTC  693

seq1  CTCTCTGGCCTCCGCAGGGGCCCATGTGTACTCATATTCAGATACACATA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGGCCTCCGCAGGGGCCCATGTGTACTCATATTCAGATACACATA  743

seq1  CACAGAAGTCAAAAATTCTACTTAAAAAACACCCAAGTAATGCCGGGCAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAGTCAAAAATTCTACTTAAAAAACACCCAAGTAATGCCGGGCAT  793

seq1  GGTGGCGCACGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGCGGAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCGCACGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGCGGAT  843

seq1  TTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCA  893

seq1  GGGCTACACAGAGAAACCCTGTCTCGAAAAACAAAAACAGAAAACAAAAC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTACACAGAGAAACCCTGTCTCGAAAAACAAAAACAGAAAACAAAAC  943

seq1  AAAACAAAATTTAGTTTCCTTTTAGTTTCCTAAAAGTCCAAGGTAAAAAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAATTTAGTTTCCTTTTAGTTTCCTAAAAGTCCAAGGTAAAAAA  993

seq1  AAAAACAGAAATACTAATTAAACAATAAAGCTATGACTTTTCCTAGTCAC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAGAAATACTAATTAAACAATAAAGCTATGACTTTTCCTAGTCAC  1043

seq1  CAGTATTAAATAAAAAAATTACCCCAGCAAAAGCAGAATAATTCTTAAAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTAAATAAAAAAATTACCCCAGCAAAAGCAGAATAATTCTTAAAA  1093

seq1  GGAGAATTC  1103
      |||||||||
seq2  GGAGAATTC  1102