BAC Information

Click to search

BAC

Clone NameB6Ng01-163N15
Chromosome18 (Build37)
Map Location 29,938,165 - 30,111,966
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040930, 4930578E11Rik, LOC666073
Downstream genePik3c3, LOC666094, LOC666100, EG666111, EG666114, LOC433168
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163N15.bB6Ng01-163N15.g
ACCDH956334DH956335
length4331,082
definitionDH956334|Mus musculus domesticus DNA, BAC clone: B6Ng01-163N15, 5' end.DH956335|Mus musculus domesticus DNA, BAC clone: B6Ng01-163N15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,938,165 - 29,938,600)(30,110,883 - 30,111,966)
sequence
atctagcttggctctttaacaaagaaataaactgaggtaaagaaggttgc
agaagatggcctagttggccatcactgggaagagaggcccgaggtcttgc
aaactttatatgccccagtacaggggaacgccagggccaagaagggggag
tgggtgggtaggggagcagggcgcggggaggggatagggaaccctaggga
tagcatttgaaatgtaaataaagaaaatatctaataaaaaaaaaagaagg
gtcaaaaagttagctaacatggaaagaatttgaagacactatcatgcatg
ttctttgagaggaatatgcagtttgccatcatggttcttccagttacttt
gctattttcaccagacaagatcttcaatctgacttcatgtgcctctgtca
catatattttatgatacgttatatgtcacatga
gaattccagtgcatttctgctcttcttctcaaggatacactcagccttct
gtgttctgatgctttagtttgacccatacacagggaggaatattctgtct
tcatttatatttggagaagcttaaaccatactggcacatcccaagccagg
ttgggactctcattagccagactttgaaatatcagaatcaattgttgatg
ccttcacatgtgtttggcaagaggattgctgtgactagtcatttcggtgt
gggaggagatgagagtatcagcccaccagccgcctaagaaatgtttccaa
cctgtgcactgaatatccaacactcatggagccgcacacctactgaacat
cgtctagctacctaaggaatattttctgctaacctataaaatatcagtac
actcacctacctacacatcttctgagcatctacaagtcttccaagaaata
ttttctatctactgacatgattccagactccatctcgcagtaacataccc
acagaaaatctaccagacatctaagaagcctttcttaattactcaccaga
tgccagacaccatcctgcagctatacagccactgagcatctgctgtgtga
tctgcttcacgaggcaggcatgatttcctgccatttttatattaaggaga
ctaagtcagaaatgattctgggcttggatcatgccttttgatacatgctg
gctttctaatctaagaccttccttccttccccctccacagttgtggtctt
catatgtgttggtgcaaagaatgagtcaggggagcagggcaggatgaaat
ctggggagccttggacaaaggctgtgaaattagtatatgaaaaaagtcag
tttcccaagaggaaagacggaaagccctacctgctgaagctgatcaaatc
aagcttgggccagccatgtagatacagacccacttttgagtgtctgaatg
acctgtgcttatcataagactaaaacacatgcctgagtaaaggttcagac
gtgacatttgaaacttgtgcatacttaccttagaagaaaaagagcaacgc
ttaaagaagccctgatatgcatgcacttcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_29938165_29938600
seq2: B6Ng01-163N15.b_46_484

seq1  GAATTCATCTAGCTTGGCTCTTTAACAAAGAAATAAACTGAGGTAAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTAGCTTGGCTCTTTAACAAAGAAATAAACTGAGGTAAAGAA  50

seq1  GGTTGCAGAAGATGGCCTAGTTGGCCATCACTGGGAAGAGAGGCCCGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCAGAAGATGGCCTAGTTGGCCATCACTGGGAAGAGAGGCCCGAGG  100

seq1  TCTTGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAGAAG  150

seq1  GGGGAGTGGGTGGGTAGGGGAGCAGGGCGCGGGGAGGGGATAGGGAACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGTGGGTGGGTAGGGGAGCAGGGCGCGGGGAGGGGATAGGGAACCC  200

seq1  TAGGGATAGCATTTGAAATGTAAATAAAGAAAATATCTAATAAAAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGATAGCATTTGAAATGTAAATAAAGAAAATATCTAATAAAAAAAAA  250

seq1  AGAAGGGTCAAAAAGTTAGCTAACATGGAAAGAATTTGAAGACACTATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGTCAAAAAGTTAGCTAACATGGAAAGAATTTGAAGACACTATCA  300

seq1  TGCATGTTCTTTGAGAGGAATATGCAGTTTGCCATCATGGTTCTTCCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTTCTTTGAGAGGAATATGCAGTTTGCCATCATGGTTCTTCCAGT  350

seq1  TAC-TGGCTA-TGTCACCAGACAAGACCTTCAATCTGACTTCATGTGCCT  398
      ||| | |||| | ||||||||||||| |||||||||||||||||||||||
seq2  TACTTTGCTATTTTCACCAGACAAGATCTTCAATCTGACTTCATGTGCCT  400

seq1  CTGTCACATATATCACA-GATACGTTATATGTCACATGA  436
      |||||||||||||   | |||||||||||||||||||||
seq2  CTGTCACATATATTTTATGATACGTTATATGTCACATGA  439

seq1: chr18_30110883_30111966
seq2: B6Ng01-163N15.g_68_1149 (reverse)

seq1  TCTG-AGTGCATTGCATAATCAGGGCCTTCTTT-AGCG-TGCTCTGTTTC  47
      |||| |||||| ||||| ||||||| ||||||| |||| |||||| ||||
seq2  TCTGAAGTGCA-TGCAT-ATCAGGG-CTTCTTTAAGCGTTGCTCTTTTTC  47

seq1  TTCT-ATGTAGTTATGCACAAGTTTCAAATGTCACTGTCTGAAACCTTTA  96
      |||| | |||  ||||||||||||||||||||||| ||||| ||||||||
seq2  TTCTAAGGTAAGTATGCACAAGTTTCAAATGTCAC-GTCTG-AACCTTTA  95

seq1  CTCAGGCATGTGTTTTAGTCTTATGATAAGCCACAGGTCATTCAGACACT  146
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTCAGGCATGTGTTTTAGTCTTATGATAAG-CACAGGTCATTCAGACACT  144

seq1  CAAAAGTGGGTCTGTATCTACATGGCTGGCCCAAGCTTGATTTGATCAGC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTGGGTCTGTATCTACATGGCTGGCCCAAGCTTGATTTGATCAGC  194

seq1  TTCAGCAGGTAGGGCTTTCCGTCCTTCCTCTTTGGGAACTGACTTTTTTC  246
      ||||||||||||||||||||||| |||||||| || ||||||||||||||
seq2  TTCAGCAGGTAGGGCTTTCCGTCTTTCCTCTTGGGAAACTGACTTTTTTC  244

seq1  ATATACTAATTTCACAGCCTTTGTCCAAGGCTCCCCAGATTTCATCCTGC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTAATTTCACAGCCTTTGTCCAAGGCTCCCCAGATTTCATCCTGC  294

seq1  CCTGCTCCCCTGACTCATTCTTTGCACCAACACATATGAAGACCACAACT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCCCCTGACTCATTCTTTGCACCAACACATATGAAGACCACAACT  344

seq1  GTGGAGGGGGAAGGAAGGAAGGTCTTAGATTAGAAAGCCAGCATGTATCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGGGGAAGGAAGGAAGGTCTTAGATTAGAAAGCCAGCATGTATCA  394

seq1  AAAGGCATGATCCAAGCCCAGAATCATTTCTGACTTAGTCTCCTTAATAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCATGATCCAAGCCCAGAATCATTTCTGACTTAGTCTCCTTAATAT  444

seq1  AAAAATGGCAGGAAATCATGCCTGCCTCGTGAAGCAGATCACACAGCAGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGGCAGGAAATCATGCCTGCCTCGTGAAGCAGATCACACAGCAGA  494

seq1  TGCTCAGTGGCTGTATAGCTGCAGGATGGTGTCTGGCATCTGGTGAGTAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGTGGCTGTATAGCTGCAGGATGGTGTCTGGCATCTGGTGAGTAA  544

seq1  TTAAGAAAGGCTTCTTAGATGTCTGGTAGATTTTCTGTGGGTATGTTACT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAAGGCTTCTTAGATGTCTGGTAGATTTTCTGTGGGTATGTTACT  594

seq1  GCGAGATGGAGTCTGGAATCATGTCAGTAGATAGAAAATATTTCTTGGAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGATGGAGTCTGGAATCATGTCAGTAGATAGAAAATATTTCTTGGAA  644

seq1  GACTTGTAGATGCTCAGAAGATGTGTAGGTAGGTGAGTGTACTGATATTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGTAGATGCTCAGAAGATGTGTAGGTAGGTGAGTGTACTGATATTT  694

seq1  TATAGGTTAGCAGAAAATATTCCTTAGGTAGCTAGACGATGTTCAGTAGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGTTAGCAGAAAATATTCCTTAGGTAGCTAGACGATGTTCAGTAGG  744

seq1  TGTGCGGCTCCATGAGTGTTGGATATTCAGTGCACAGGTTGGAAACATTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGGCTCCATGAGTGTTGGATATTCAGTGCACAGGTTGGAAACATTT  794

seq1  CTTAGGCGGCTGGTGGGCTGATACTCTCATCTCCTCCCACACCGAAATGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGCGGCTGGTGGGCTGATACTCTCATCTCCTCCCACACCGAAATGA  844

seq1  CTAGTCACAGCAATCCTCTTGCCAAACACATGTGAAGGCATCAACAATTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCACAGCAATCCTCTTGCCAAACACATGTGAAGGCATCAACAATTG  894

seq1  ATTCTGATATTTCAAAGTCTGGCTAATGAGAGTCCCAACCTGGCTTGGGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGATATTTCAAAGTCTGGCTAATGAGAGTCCCAACCTGGCTTGGGA  944

seq1  TGTGCCAGTATGGTTTAAGCTTCTCCAAATATAAATGAAGACAGAATATT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCAGTATGGTTTAAGCTTCTCCAAATATAAATGAAGACAGAATATT  994

seq1  CCTCCCTGTGTATGGGTCAAACTAAAGCATCAGAACACAGAAGGCTGAGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTGTGTATGGGTCAAACTAAAGCATCAGAACACAGAAGGCTGAGT  1044

seq1  GTATCCTTGAGAAGAAGAGCAGAAATGCACTGGAATTC  1084
      ||||||||||||||||||||||||||||||||||||||
seq2  GTATCCTTGAGAAGAAGAGCAGAAATGCACTGGAATTC  1082