BAC Information

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BAC

Clone NameB6Ng01-164B13
Chromosome18 (Build37)
Map Location 33,327,744 - 33,328,928
singlet/doubletsinglet
Overlap geneCamk4
Upstream geneMap3k2, Ercc3, Bin1, Gypc, LOC100041160, LOC100041170, Tslp, Wdr36
Downstream geneStard4, EG433170, D0H4S114, ENSMUSG00000073610, LOC666281, LOC100041258, Epb4.1l4a, EG666296, Ppia-ps18_318.1, Ppia-ps18_319.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164B13.bB6Ng01-164B13.g
ACCDH956515DH956516
length1,1691,173
definitionDH956515|Mus musculus domesticus DNA, BAC clone: B6Ng01-164B13, 5' end.DH956516|Mus musculus domesticus DNA, BAC clone: B6Ng01-164B13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtgaatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggtggttcctca
gaaaattggacctagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaatctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaacttacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
cataacacccttggaaggagttacagagacaaagtttggagctgagataa
aaggatagaccatgtagagactgccatatccatggatccaccccataatc
agcatccaaatgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgggagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggaggagctagagaaagtacccaaggagctaaagggatctgcaaccct
ataggtggacacatatgaactaccagtacccggagctctggactctagct
gcatatgtatcaagatggcctagtcgcatcactggaagagaggcatgtac
acgcaactttattgccaatacagggtacgcccaggccaaatggtgagtgg
tctgggtagggaaatggtg
gaattcatgcctgtttgaataactcttaggagtataggtttctgatattt
tttacagcctgaaggaaaaaaaaatggttaaattgtagtttaatatttta
acaagtttaaaagcagagtggtttactttcctttgtacatttgtgtgtac
aatgaaacgcgcacacacactatcacgtttgaggacctaaaactgatacc
ttctgaagaagaggcatctcttcatcttgcttcatcgcttagagggcttg
tttgaataatcaggtaagcctgatgcttcagtgtgctttgtagacaccgt
tccttggagctgaggatgtagcttggcgatacataactttcctagcgtag
gtaaagcactgggtttgattcccagcactgagaaaggttacaatttaaaa
gatgtcacttgataggtgtgacagaacactctctgtcttcagctctggtc
catgcatagcatgataagtccatgaaatagccacattgctactttttaat
tttttaaaaacttctttgacaattttacatagccccttgaaaaataacct
agaaagttcactctgccaaagctcaatacaatttgtaaatcatctacagt
gcatcaggaaagagtctcgtagctatcaccaaaggaagctaaccaatgag
agtcctgcagctatcgccaaagaaagttaaccaattgtctatatttcttt
actgtatatactcactaatatggacgatacagggatgttattgttaagaa
aataagtttgataacctaaaatagaaacagctagtatagtttctttaaag
acagtattttcattcatgaaaaataactacctacactgaaattgaaggat
ctaagtgacactggccatgtcaccaagtaaggaacaatctcacccaagta
ttaatcaaacacagagatgacttctattttacaatggaatctttaaaatc
aaatgagttaagcacacagtaaactctcatttgtgccgcttatgctttct
actgcactggctatgggtcatgctagagttccatgatcagtgggagggaa
gagaagaaagaagaccagatgcaatagcaggtggaaagagtgtacaaaat
aaccctctcctgaaccgtagcctcctctcctgagggtgaaatgtccagaa
catcttatacgaatgaactggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_33327744_33328928
seq2: B6Ng01-164B13.g_68_1240

seq1  GAATTCATGCCTGTTTGAATAACTCTTAGGAGTATAGGTTTCTGATATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCCTGTTTGAATAACTCTTAGGAGTATAGGTTTCTGATATTT  50

seq1  TTTACAGCCTGAAGGAAAAAAAAATGGTTAAATTGTAGTTTAATATTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGCCTGAAGGAAAAAAAAATGGTTAAATTGTAGTTTAATATTTTA  100

seq1  ACAAGTTTAAAAGCAGAGTGGTTTACTTTCCTTTGTACATTTGTGTGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTTAAAAGCAGAGTGGTTTACTTTCCTTTGTACATTTGTGTGTAC  150

seq1  AATGAAACGCGCACACACACTATCACGTTTGAGGACCTAAAACTGATACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAACGCGCACACACACTATCACGTTTGAGGACCTAAAACTGATACC  200

seq1  TTCTGAAGAAGAGGCATCTCTTCATCTTGCTTCATCGCTTAGAGGGCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGAAGAGGCATCTCTTCATCTTGCTTCATCGCTTAGAGGGCTTG  250

seq1  TTTGAATAATCAGGTAAGCCTGATGCTTCAGTGTGCTTTGTAGACACCGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATAATCAGGTAAGCCTGATGCTTCAGTGTGCTTTGTAGACACCGT  300

seq1  TCCTTGGAGCTGAGGATGTAGCTTGGCGATACATAACTTTCCTAGCGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGAGCTGAGGATGTAGCTTGGCGATACATAACTTTCCTAGCGTAG  350

seq1  GTAAAGCACTGGGTTTGATTCCCAGCACTGAGAAAGGTTACAATTTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGCACTGGGTTTGATTCCCAGCACTGAGAAAGGTTACAATTTAAAA  400

seq1  GATGTCACTTGATAGGTGTGACAGAACACTCTCTGTCTTCAGCTCTGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCACTTGATAGGTGTGACAGAACACTCTCTGTCTTCAGCTCTGGTC  450

seq1  CATGCATAGCATGATAAGTCCATGAAATAGCCACATTGCTACTTTTTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATAGCATGATAAGTCCATGAAATAGCCACATTGCTACTTTTTAAT  500

seq1  TTTTTAAAAACTTCTTTGACAATTTTACATAGCCCCTTGAAAAATAACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAACTTCTTTGACAATTTTACATAGCCCCTTGAAAAATAACCT  550

seq1  AGAAAGTTCACTCTGCCAAAGCTCAATACAATTTGTAAATCATCTACAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTTCACTCTGCCAAAGCTCAATACAATTTGTAAATCATCTACAGT  600

seq1  GCATCAGGAAAGAGTCTCGTAGCTATCACCAAAGGAAGCTAACCAATGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGGAAAGAGTCTCGTAGCTATCACCAAAGGAAGCTAACCAATGAG  650

seq1  AGTCCTGCAGCTATCGCCAAAGAAAGTTAACCAATTGTCTATATTTCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGCAGCTATCGCCAAAGAAAGTTAACCAATTGTCTATATTTCTTT  700

seq1  ACTGTATATACTCACTAATATGGACGATACAGGGATGTTATTGTTAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATATACTCACTAATATGGACGATACAGGGATGTTATTGTTAAGAA  750

seq1  AATAAGTTTGATAACCTAAAATAGAAACAGCTAGTATAGTTTCTTTAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTTTGATAACCTAAAATAGAAACAGCTAGTATAGTTTCTTTAAAG  800

seq1  ACAGTATTTTCATTCATGAAAAATAACTACCTACACTGAAATTGAAGGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATTTTCATTCATGAAAAATAACTACCTACACTGAAATTGAAGGAT  850

seq1  CTAAGTGACACTGGCCATGTCACCAAGTAAGGAACAATCTCACCCAAGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGACACTGGCCATGTCACCAAGTAAGGAACAATCTCACCCAAGTA  900

seq1  TTAATCAAACACAGAGATGACTTCTATTTTACAATGGAATCTTTAAAAAT  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTAATCAAACACAGAGATGACTTCTATTTTACAATGGAATCTTT-AAAAT  949

seq1  CAAAATGAGTTAAGCACACAGTAAACTCTCATTTGTGCCGCTTATTGCTT  1000
      | |||||||||||||||||||||||||||||||||||||||||| |||||
seq2  C-AAATGAGTTAAGCACACAGTAAACTCTCATTTGTGCCGCTTA-TGCTT  997

seq1  TCTACTGCACTGGCTATGGGTCATGCTAGAGTTCCCATGATCAGTGGGAG  1050
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCTACTGCACTGGCTATGGGTCATGCTAGAGTT-CCATGATCAGTGGGAG  1046

seq1  GG-AGAGAGAAAGGAAGACCAAGGATGCAATAAGCAGGTTG-GAGAGTGT  1098
      || |||||  || ||||||||  |||||||| ||||||| |  |||||||
seq2  GGAAGAGAAGAAAGAAGACCA--GATGCAAT-AGCAGGTGGAAAGAGTGT  1093

seq1  ACACAAATACACCTCTCCTCTGACCGTAGCCTTCCTTCTCCCTGAGGTGG  1148
      ||| |||||  ||||||||   ||||||||||  | ||| ||||||| | 
seq2  ACA-AAATAACCCTCTCCT-GAACCGTAGCCT--CCTCT-CCTGAGG-GT  1137

seq1  GATATGTCCCAGAACATCTTTATCAGATGAACTGGTA  1185
      || |||| ||||||||||||   |  |||||||||||
seq2  GAAATGT-CCAGAACATCTTATACGAATGAACTGGTA  1173