BAC Information

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BAC

Clone NameB6Ng01-166I19
Chromosome18 (Build37)16 (Build37)
Map Location 40,467,676 - 40,467,9253,350,582 - 3,351,851
singlet/doubletsingletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166I19.bB6Ng01-166I19.g
ACCDH958300DH958301
length3751,093
definitionDH958300|Mus musculus domesticus DNA, BAC clone: B6Ng01-166I19, 5' end.DH958301|Mus musculus domesticus DNA, BAC clone: B6Ng01-166I19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(40,467,676 - 40,467,925)(3,350,582 - 3,351,851)
sequence
tctgaactcactgtcctttcaggtccacatttgctctggctctggcaact
gactgaaccaaacaattaggctcatacctagaactttggaaatggtaatg
gagttgataacacaccctaacagaaagaggaaggctccactcactagtac
actttcactagaagcctcaccctgtcagcagtttaggaatttgtaaagcc
aatctggacaatatttaaatggtttggaatttctacttcatgtttttttt
tttttttttttttttagacagggtttctctgtatagccctggctgtcctg
gcacattggattttataacagactttgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtaatacttct
gaattcaaggccaccatggccatggtcggcaaagtgagttccagaacagc
cagggctatagggagaaaccctgtctcgaaaaaaaaaaacaaaataaata
aaataaaataaaataaaataagaaatagaaatgaaaaagaattagaaaaa
agattacagaaataaaacataagcccactagattgcaggttaccgcaatc
acagcagaaatatcaaacacacacacacacacacacacacacacgcacac
acactctgtcataaaatccaatgtgccaggacagccagggctatacagag
aaaccctgtctcgaaaaaccaaaacaaacaaaaaaacaaaaaacaaaaat
ccaatgtgccttcatgatcaaaattcgatagtcaatagtactagaagaat
catatgtctgaaaatccttccttccttccttccttcctttctttctttct
ttctttctttctttctttctttctttctttctccctttctttctttcttt
ctttctttctttctttctttctttctttctttctttcttattacaaatag
ttttcaatgtaagtgtgtgtttgtgctttatctgctgcgtatatacctgc
atgccaggagagggcaacagaacctaggagaaaccaccatgcagctcctg
agaataaatgaaaaaacaacaaaaaaggaaattctaatcacatagaatgt
agatatatgcgaggctgtcagagtgctttttaaggcttagtgtaagtaat
gaaaattgttgtgtgtcttttatccaaacacagaaaggcagatggttcgc
ctgcatgtctgttgtctgcatgtctacttccttgtcctgtcactcggctg
cactttgacctcaccaagctgaaagacaacatgtgcatggcagccatctt
gtctgctaactgaactcccgcacaacagatggagtgctgccttcatgtga
cctattgtttcagtcgctttggtttctccttcaccgggtttagtgcccgt
ttgcagtgcagatggtgaggagctcctaagcagctcgacatccacagaag
cctcacgtttttctctactttttcttatgcttttacgcagact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_40467676_40467925
seq2: B6Ng01-166I19.b_42_292 (reverse)

seq1  AAACATGAAGTAGAAATTCCAAATCATGTAAATATTGTCCAGATTGGCTT  50
      ||||||||||||||||||||||| ||| ||||||||||||||||||||||
seq2  AAACATGAAGTAGAAATTCCAAACCATTTAAATATTGTCCAGATTGGCTT  50

seq1  TACAAATTCCTAAACTGCTGGCAGGGCGAGGCTTCTAGTGAAAGTCTTCT  100
      |||||||||||||||||||| ||||| |||||||||||||||||| | ||
seq2  TACAAATTCCTAAACTGCTGACAGGGTGAGGCTTCTAGTGAAAGTGTACT  100

seq1  AGTGAGTGGAGCCTTCCTCTTTCTGTTAGAGTGTGTTTTCAACTCCATTA  150
      ||||||||||||||||||||||||||||| ||||||| ||||||||||||
seq2  AGTGAGTGGAGCCTTCCTCTTTCTGTTAGGGTGTGTTATCAACTCCATTA  150

seq1  CCATTTTCGAAGATCTAGGTATGAGCCT-ATTGTTTGGTTCAGTCAGTTG  199
      |||||| | ||| ||||||||||||||| |||||||||||||||||||||
seq2  CCATTTCCAAAGTTCTAGGTATGAGCCTAATTGTTTGGTTCAGTCAGTTG  200

seq1  CCAGAGCCAGAGCAAAGGTGGACCTGAAAGGACAGTGAGTTCAGAGAATT  249
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCAGAGCCAGAGCAAATGTGGACCTGAAAGGACAGTGAGTTCAGAGAATT  250

seq1  C  250
      |
seq2  C  251

seq1: chr16_3350582_3351851
seq2: B6Ng01-166I19.g_68_1160 (reverse)

seq1  AGTCTGCCATTTAAAAGCATAAGGAAAAGGTAGGAGAAAACGTGAGGCTG  50
      |||||||    ||||||||||| ||||| ||||   ||||||||||||| 
seq2  AGTCTGC---GTAAAAGCATAA-GAAAAAGTAGAGAAAAACGTGAGGCT-  45

seq1  TCTGTGGATGTTGGAGGCTGCTTTAGGGAGTCTCCTCACCATTCTGCACT  100
      ||||||||||| |   |||||||   |||| |||||||||| ||||||| 
seq2  TCTGTGGATGTCG--AGCTGCTT--AGGAG-CTCCTCACCA-TCTGCAC-  88

seq1  TGCAAACCGGGCCACTAGAACCCAGTGAAGGGAGAAACCAAAGTGACCTG  150
      |||||||  || ||||| ||||| ||||| ||||||||||||| || |||
seq2  TGCAAAC--GGGCACTA-AACCCGGTGAA-GGAGAAACCAAAGCGA-CTG  133

seq1  AAACAATAGGTCTCATGACCGCCAGATACTTCCATCTTGTTTCGAGGGAG  200
      |||||||||||| |||||  | |||  || |||||| ||||  | |||||
seq2  AAACAATAGGTCACATGA-AGGCAG-CAC-TCCATC-TGTTGTGCGGGAG  179

seq1  GTCAGTCAGCAGATAAAATGGCTGCCATCCACATGTCACCTTTCATCTTG  250
       ||||| |||||| || ||||||||||| |||||||   |||||| ||||
seq2  TTCAGTTAGCAGACAAGATGGCTGCCATGCACATGTTGTCTTTCAGCTTG  229

seq1  GTGAGGTCAAAGTGCAACCAAGTGACAGAACAAGGAAGTAGACATGCAAA  300
      |||||||||||||||| || |||||||| ||||||||||||||||||| |
seq2  GTGAGGTCAAAGTGCAGCCGAGTGACAGGACAAGGAAGTAGACATGCAGA  279

seq1  CAACAGACATGCAGGCGCACCACCT-CCCTTCTGTTTTTTGGATAAAAGA  349
      ||||||||||||||||| |||| || || ||||| | |||||||||||||
seq2  CAACAGACATGCAGGCGAACCATCTGCCTTTCTG-TGTTTGGATAAAAGA  328

seq1  CAC---ACAAGTTTTATTATTTACAGTAAGCCTTAAAAAGCACTCTGACA  396
      |||   |||| ||| |||| ||||| ||||||||||||||||||||||||
seq2  CACACAACAATTTTCATTACTTACACTAAGCCTTAAAAAGCACTCTGACA  378

seq1  GCCGCGCATACATCTACCTTCTATGTGATTAGAATTTCCTTTTTTTTGTT  446
      ||| |||||| |||||| |||||||||||||||||||||||||     ||
seq2  GCCTCGCATATATCTACATTCTATGTGATTAGAATTTCCTTTT-----TT  423

seq1  GTTGTTTTTTAATTTATTCTCAGGAGCAGCATGGTGCTTTCTCCTAAGTC  496
      |||||||||| |||||||||||||||| |||||||| ||||||||| || 
seq2  GTTGTTTTTTCATTTATTCTCAGGAGCTGCATGGTGGTTTCTCCTAGGTT  473

seq1  CTGTTGCCCTCTCCTGGCATGCAGGCATATAGGCAGCAGATAGAGTACAA  546
      ||||||||||||||||||||||||| ||||| |||||||||| || ||||
seq2  CTGTTGCCCTCTCCTGGCATGCAGGTATATACGCAGCAGATAAAGCACAA  523

seq1  ACACACACTTACATTGAAAAATAATTGTAATAAGAAAGAATGAAAGAAAG  596
      |||||||||||||||||||| || |||||||||||||||| |||||||||
seq2  ACACACACTTACATTGAAAACTATTTGTAATAAGAAAGAAAGAAAGAAAG  573

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGGGAGAGAG  646
      ||||||||||||||||||||||||||||||||| || ||||  || ||| 
seq2  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGGAGAAAGAAAGAA  623

seq1  AGAGAGAAAGAGAGAGAGAGAGAGGAAGGAAGGAAGGAAGGAAGGAAGGA  696
      ||| ||||||| ||| ||| |||  ||| ||| |||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGA--AAGAAAGAAAGGAAGGAAGGAAGGA  671

seq1  AGGAAGGAAGGAAGGAAGAAACAAAGATCCTAACTTTGGCCCTGCTGTGT  746
      ||||||||        ||| |  | ||| ||   | | |   | || | |
seq2  AGGAAGGA---TTTTCAGACA-TATGATTCT---TCTAG---TACTAT-T  710

seq1  GGGTGGCAGAAGCAAGCAGGCAGGCAGGCAGGCAGGCAGGCAGAGAGGAC  796
      |  |  | |||    |                || | ||||| |  ||| 
seq2  GACTATC-GAATTTTG--------------ATCATGAAGGCACATTGGA-  744

seq1  CTCTCTGAGTTTGAGGCTACCAAAGCCTACAAAGCAAGTTCCAGGCAGGG  846
       | | ||  |||                                      
seq2  -TTTTTGTTTTT--------------------------------------  755

seq1  ATGCCAGGGCTACACCGAGAGAAAACCTATCTTGGGGAAAAAGAAAACAA  896
       ||                        | | || |               
seq2  -TG------------------------TTTTTTTG---------------  765

seq1  AAGCAGAAAAGGTTCTGGCTTTTACTTTCAGACATATGATTCT-TGTAGT  945
                 ||| ||| ||    ||  |||||   | |||| |||| |
seq2  --------TTTGTTTTGGTTT----TTCGAGACA-GGGTTTCTCTGTA-T  801

seq1  ACTATTGACTATCCAATTTTGATCATGAAGGCACATTGGATTTTATGACA  995
      |    || || |||               |||||||||||||||||||||
seq2  AGCCCTGGCTGTCC--------------TGGCACATTGGATTTTATGACA  837

seq1  GAGTTT------GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAATATTTC  1039
      |||| |      |||||||||||||||||||||||||||| | |||||||
seq2  GAGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGATATTTC  887

seq1  TACTGTGATTGCGGTAACTTGCAACCAAGTGAGCTTATGTTTGATTTCTG  1089
      | |||||||||||||||| ||||| | |||| |||||||||| |||||||
seq2  TGCTGTGATTGCGGTAACCTGCAATCTAGTGGGCTTATGTTTTATTTCTG  937

seq1  TAATCTTTTTTCTAATTCTTTTTCATTTATATTT-TTATTTTATTTTGTT  1138
      |||||||||||||||||||||||||||| ||||| |||||||||||| ||
seq2  TAATCTTTTTTCTAATTCTTTTTCATTTCTATTTCTTATTTTATTTTATT  987

seq1  TTTTGTTGTTGTTGTTTGTTTTTTTGTTTTTTTGTTTTTTTGTTTTGTTT  1188
      |                         | ||||  || ||||||||| |||
seq2  T-------------------------TATTTTATTTATTTTGTTTT-TTT  1011

seq1  TTATCGAGACAGGGTTTCTCCATATAGCCCTGGCTGTCCTGGAACTCACT  1238
      || |||||||||||||||||| ||||||||||||||| ||||||||||||
seq2  TTTTCGAGACAGGGTTTCTCCCTATAGCCCTGGCTGTTCTGGAACTCACT  1061

seq1  GTGCTGACCATGACCATGGTGGCCTTGAATTC  1270
       ||| ||||||| |||||||||||||||||||
seq2  TTGCCGACCATGGCCATGGTGGCCTTGAATTC  1093