BAC Information

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BAC

Clone NameB6Ng01-166M23
Chromosome18 (Build37)
Map Location 65,258,244 - 65,449,937
singlet/doubletdoublet
Overlap geneNedd4l, Alpk2
Upstream geneLOC667773, St8sia3, LOC433193, Onecut2, LOC667783, LOC100043304, Fech, Nars, Atp8b1, LOC629480
Downstream geneLOC667816, Malt1, LOC638570, LOC100042820, Zfp532, 5330437I02Rik, Sec11c, Grp, Rax, Cplx4, Lman1, Ccbe1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166M23.bB6Ng01-166M23.g
ACCDH958480DH958481
length1,0801,081
definitionDH958480|Mus musculus domesticus DNA, BAC clone: B6Ng01-166M23, 5' end.DH958481|Mus musculus domesticus DNA, BAC clone: B6Ng01-166M23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,448,849 - 65,449,937)(65,258,244 - 65,259,324)
sequence
gaattctatcaaatgtccactatttactactccaattgtacctctgaaaa
ggcattgcggaggatcttgggaactaccagtcccatccctaccaaccatt
gtttgacatcatgccaaagggcctgtctcttgagatcaggaacaaccttc
ccccatgttggttctagaaatattatagttcccagacactttgcctgaga
ggccatttctctgacattggcttgtgtaacccatgtctcaaagcaccttt
atcgctggccaattctacattgtaagttttgtttctggggtgtagtttag
tggcaggaccgtcgcctaacctaattcactaggtcctggtaagggtcccc
agaactaaaacaaacaaacaaaaaaagatgcttctgtgatgccaaacagc
catgatgggcctaggaatctatttatctgagcaatcttagaaatagtaat
cgtcttgctaagcaatattctgaattctcccagtcactcggattcaccat
gtttttgtctgatacaggaatgctacgtccagaatactgccagatactac
gccaagatctacgccgctgaagcacagcctctggaaggcttcggagaggt
gccggagtaagtttgtgcaggctcccatgtgttgctacctctgatttgct
atgaatgtggaaggcctagagggcgggatggtgagaagggtcaagtgttt
gatttcatctgattatcaactctatgagggatcacgtggccactgtcttg
ttcttgtttgatctccagaggtgtaaaagaatgcctgataaatattattt
ttttaattaaaaaaattaattatgtggggctggaaaggtggctcagtggc
taagaacgctggcagctgttccagagcacctgggctcagttgcactcaca
tggtggctcactccagccccttggggctatcactctgatgccttctttcg
gctctgtgggcactgcatgcatgtgggcacaggtacaaattgcagcaaat
aaccgtacaaataaaaagatttaattttaaatgtaaatgtagctgaattt
acagaagtttgtgagccacccaggtgttgg
gaattcctcacgggtgtttgaggactgaatttgtcacaagtctatctgct
gatggtggtgtcatcagcaaacggatctcaatttatacttttagtcgcca
cgtaaggaacgccatcctttcagaattaatgacttttctaacatattgta
atggaagagtcctggagtgggaggggaaatcaataaaaaggttttttggg
ttttgttgttgttgttgttgttctttttttcaaattttatgtctcacttg
atgagcaccatcaacaacttttccttttataacttcaggttacaggactt
tagagatacccaggtttatttacttttgcaaaaggcctcagtgttcttga
gcaatggctacctctccttttgatgtatttcttaaaagttgttctaccta
gtcttcattaaacccaattttaagtcactcttttagaagcatgccagaaa
aagaaaaaatagttgtaaaatggttttatttgttattttgaggcaggctc
ttatgtagcccaggttgatcttggaagccatggtctttttgcctccagct
ctgagtgccgggattataagcaggcccagtgtatgaagggatgggggtca
gccccacggcttcatcatgctgggcaagctctccaccaactgagctacat
cctcagcatacaactcatactaagaaacctgaggtcagtatgaattgtgg
tgattataatctagattgaacagcatcaggggatgggatcccgcctccca
caccagctgtgtgtgtgtttgccttttggtaaacagcagccttaaagtgt
aactgatggaggggtttccccagtcggggttatcaggtttgtctgttggt
aatgattatattagaatgtgtttctcttcggtccatgtgatttgcccaac
ctaatgccaactgtggtttctctggaatctctgagttcaggagtctaata
ataagaagatggagagaattagttgctaaatttggggtgccctgaaatga
gattgttagcaaatttttcctcagaccaacaaccgtgttggtggtcgtcg
gaaatctatcctgtgggaacagaaaataaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_65448849_65449937
seq2: B6Ng01-166M23.b_48_1127 (reverse)

seq1  CCAACACCT-GGTGGCTCACAAACATCTGTAACTCCAGCTCACATTTTTA  49
      ||||||||| |||||||||||||| ||||||| | ||||| |||  ||||
seq2  CCAACACCTGGGTGGCTCACAAACTTCTGTAAATTCAGCT-ACA--TTTA  47

seq1  CATTTTAAAAATTAACATCTTTTTATTTGTACGGGTATTTTGCCTGCAAT  99
      |||||  |||||||| |||||||||||||||||| |||||   |||||||
seq2  CATTT--AAAATTAA-ATCTTTTTATTTGTACGGTTATTT--GCTGCAAT  92

seq1  ATGTACCTGTGCACCACATGCATGCAGTGCCCACAGAGGCCGAAAGAAGG  149
       ||||||||||| |||||||||||||||||||||||| ||||||||||||
seq2  TTGTACCTGTGC-CCACATGCATGCAGTGCCCACAGA-GCCGAAAGAAGG  140

seq1  CATCAGAGTGATAGCCCCAAGGGGCTGGAGTGAGCCACCATGTGAGTGCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGAGTGATAGCCCCAAGGGGCTGGAGTGAGCCACCATGTGAGTGCA  190

seq1  ACTGAGCCCAGGTGCTCTGGAACAGCTGCCAGCGTTCTTAGCCACTGAGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCCCAGGTGCTCTGGAACAGCTGCCAGCGTTCTTAGCCACTGAGC  240

seq1  CACCTTTCCAGCCCCACATAATTAATTTTTTTAATTAAAAAAATAATATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTCCAGCCCCACATAATTAATTTTTTTAATTAAAAAAATAATATT  290

seq1  TATCAGGCATTCTTTTACACCTCTGGAGATCAAACAAGAACAAGACAGTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGGCATTCTTTTACACCTCTGGAGATCAAACAAGAACAAGACAGTG  340

seq1  GCCACGTGATCCCTCATAGAGTTGATAATCAGATGAAATCAAACACTTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACGTGATCCCTCATAGAGTTGATAATCAGATGAAATCAAACACTTGA  390

seq1  CCCTTCTCACCATCCCGCCCTCTAGGCCTTCCACATTCATAGCAAATCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTCACCATCCCGCCCTCTAGGCCTTCCACATTCATAGCAAATCAG  440

seq1  AGGTAGCAACACATGGGAGCCTGCACAAACTTACTCCGGCACCTCTCCGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGCAACACATGGGAGCCTGCACAAACTTACTCCGGCACCTCTCCGA  490

seq1  AGCCTTCCAGAGGCTGTGCTTCAGCGGCGTAGATCTTGGCGTAGTATCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCCAGAGGCTGTGCTTCAGCGGCGTAGATCTTGGCGTAGTATCTG  540

seq1  GCAGTATTCTGGACGTAGCATTCCTGTATCAGACAAAAACATGGTGAATC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTATTCTGGACGTAGCATTCCTGTATCAGACAAAAACATGGTGAATC  590

seq1  CGAGTGACTGGGAGAATTCAGAATATTGCTTAGCAAGACGATTACTATTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTGACTGGGAGAATTCAGAATATTGCTTAGCAAGACGATTACTATTT  640

seq1  CTAAGATTGCTCAGATAAATAGATTCCTAGGCCCATCATGGCTGTTTGGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATTGCTCAGATAAATAGATTCCTAGGCCCATCATGGCTGTTTGGC  690

seq1  ATCACAGAAGCATCTTTTTTTGTTTGTTTGTTTTAGTTCTGGGGACCCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGAAGCATCTTTTTTTGTTTGTTTGTTTTAGTTCTGGGGACCCTT  740

seq1  ACCAGGACCTAGTGAATTAGGTTAGGCGACGGTCCTGCCACTAAACTACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGACCTAGTGAATTAGGTTAGGCGACGGTCCTGCCACTAAACTACA  790

seq1  CCCCAGAAACAAAACTTACAATGTAGAATTGGCCAGCGATAAAGGTGCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGAAACAAAACTTACAATGTAGAATTGGCCAGCGATAAAGGTGCTT  840

seq1  TGAGACATGGGTTACACAAGCCAATGTCAGAGAAATGGCCTCTCAGGCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACATGGGTTACACAAGCCAATGTCAGAGAAATGGCCTCTCAGGCAA  890

seq1  AGTGTCTGGGAACTATAATATTTCTAGAACCAACATGGGGGAAGGTTGTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTGGGAACTATAATATTTCTAGAACCAACATGGGGGAAGGTTGTT  940

seq1  CCTGATCTCAAGAGACAGGCCCTTTGGCATGATGTCAAACAATGGTTGGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATCTCAAGAGACAGGCCCTTTGGCATGATGTCAAACAATGGTTGGT  990

seq1  AGGGATGGGACTGGTAGTTCCCAAGATCCTCCGCAATGCCTTTTCAGAGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGGGACTGGTAGTTCCCAAGATCCTCCGCAATGCCTTTTCAGAGG  1040

seq1  TACAATTGGAGTAGTAAATAGTGGACATTTGATAGAATTC  1089
      ||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTGGAGTAGTAAATAGTGGACATTTGATAGAATTC  1080

seq1: chr18_65258244_65259324
seq2: B6Ng01-166M23.g_67_1147

seq1  GAATTCCTCACGGGTGTTTGAGGACTGAATTTGTCACAAGTCTATCTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCACGGGTGTTTGAGGACTGAATTTGTCACAAGTCTATCTGCT  50

seq1  GATGGTGGTGTCATCAGCAAACGGATCTCAATTTATACTTTTAGTCGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGGTGTCATCAGCAAACGGATCTCAATTTATACTTTTAGTCGCCA  100

seq1  CGTAAGGAACGCCATCCTTTCAGAATTAATGACTTTTCTAACATATTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAGGAACGCCATCCTTTCAGAATTAATGACTTTTCTAACATATTGTA  150

seq1  ATGGAAGAGTCCTGGAGTGGGAGGGGAAATCAATAAAAAGGTTTTTTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGAGTCCTGGAGTGGGAGGGGAAATCAATAAAAAGGTTTTTTGGG  200

seq1  TTTTGTTGTTGTTGTTGTTGTTCTTTTTTTCAAATTTTATGTCTCACTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGTTGTTGTTGTTGTTCTTTTTTTCAAATTTTATGTCTCACTTG  250

seq1  ATGAGCACCATCAACAACTTTTCCTTTTATAACTTCAGGTTACAGGACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCACCATCAACAACTTTTCCTTTTATAACTTCAGGTTACAGGACTT  300

seq1  TAGAGATACCCAGGTTTATTTACTTTTGCAAAAGGCCTCAGTGTTCTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATACCCAGGTTTATTTACTTTTGCAAAAGGCCTCAGTGTTCTTGA  350

seq1  GCAATGGCTACCTCTCCTTTTGATGTATTTCTTAAAAGTTGTTCTACCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGGCTACCTCTCCTTTTGATGTATTTCTTAAAAGTTGTTCTACCTA  400

seq1  GTCTTCATTAAACCCAATTTTAAGTCACTCTTTTAGAAGCATGCCAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCATTAAACCCAATTTTAAGTCACTCTTTTAGAAGCATGCCAGAAA  450

seq1  AAGAAAAAATAGTTGTAAAATGGTTTTATTTGTTATTTTGAGGCAGGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAATAGTTGTAAAATGGTTTTATTTGTTATTTTGAGGCAGGCTC  500

seq1  TTATGTAGCCCAGGTTGATCTTGGAAGCCATGGTCTTTTTGCCTCCAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTAGCCCAGGTTGATCTTGGAAGCCATGGTCTTTTTGCCTCCAGCT  550

seq1  CTGAGTGCCGGGATTATAAGCAGGCCCAGTGTATGAAGGGATGGGGGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGCCGGGATTATAAGCAGGCCCAGTGTATGAAGGGATGGGGGTCA  600

seq1  GCCCCACGGCTTCATCATGCTGGGCAAGCTCTCCACCAACTGAGCTACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCACGGCTTCATCATGCTGGGCAAGCTCTCCACCAACTGAGCTACAT  650

seq1  CCTCAGCATACAACTCATACTAAGAAACCTGAGGTCAGTATGAATTGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCATACAACTCATACTAAGAAACCTGAGGTCAGTATGAATTGTGG  700

seq1  TGATTATAATCTAGATTGAACAGCATCAGGGGATGGGATCCCGCCTCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATAATCTAGATTGAACAGCATCAGGGGATGGGATCCCGCCTCCCA  750

seq1  CACCAGCTGTGTGTGTGTTTGCCTTTTGGTAAACAGCAGCCTGAAAGTGT  800
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CACCAGCTGTGTGTGTGTTTGCCTTTTGGTAAACAGCAGCCTTAAAGTGT  800

seq1  AACTGATGGAGGGGTTTCCCCAGTCGGGGTTATCAGGTTTGTCTGTTGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATGGAGGGGTTTCCCCAGTCGGGGTTATCAGGTTTGTCTGTTGGT  850

seq1  AATGATTATATTAGAATGTGTTTCTCTTCGGTCCATGTGATTTG-CCAAC  899
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AATGATTATATTAGAATGTGTTTCTCTTCGGTCCATGTGATTTGCCCAAC  900

seq1  CTAATGCCAACTGTGG-TTCTCTGGAATCTCTGAGTTTCAGGAGTCTATT  948
      |||||||||||||||| |||||||||||||||||| |||||||||||| |
seq2  CTAATGCCAACTGTGGTTTCTCTGGAATCTCTGAG-TTCAGGAGTCTAAT  949

seq1  AATAAAGAAGATGGAGAGAATTAGTTGCT-AATTTTGGGTGCGCTTGAAA  997
      ||| ||||||||||||||||||||||||| ||||| |||||| | |||||
seq2  AAT-AAGAAGATGGAGAGAATTAGTTGCTAAATTTGGGGTGC-CCTGAAA  997

seq1  TGAGATTGTTAGCAAATTTTACCTTCAGACCTACAACCGTGGTTTGCTGT  1047
      |||||||||||||||||||| || ||||||| |||||||||  ||| || 
seq2  TGAGATTGTTAGCAAATTTTTCC-TCAGACCAACAACCGTG--TTGGTGG  1044

seq1  CCATCGGACATC-ATCCT-TGGG-ACAGAAAATAAAT  1081
       | ||||| ||| ||||| |||| |||||||||||||
seq2  TCGTCGGAAATCTATCCTGTGGGAACAGAAAATAAAT  1081