BAC Information

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BAC

Clone NameB6Ng01-166N05
Chromosome18 (Build37)
Map Location 68,840,886 - 68,842,056
singlet/doubletsinglet
Overlap genenone
Upstream genePtpn2, Seh1l, LOC667939, D18Ertd653e, 4933403F05Rik, Rnmt, Mc5r, Mc2r
Downstream geneLOC100043380, EG225681, Tcf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166N05.bB6Ng01-166N05.g
ACCDH958492DH958493
length5461,173
definitionDH958492|Mus musculus domesticus DNA, BAC clone: B6Ng01-166N05, 5' end.DH958493|Mus musculus domesticus DNA, BAC clone: B6Ng01-166N05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tgttattttccatgttgaagagaaacacatggaataagaacttgtacctt
tcattccttttatgctgctgctgctgctgctgttgctctctctctctctc
tctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtatg
tgtgtgtgagtacaccctcgtaagtgtaccagagactgtgtttgtgaggg
tccaactcgggtggatgtaacttctgctcccttgagtcttgattgtcgga
cctgaaagatgctccttatagtttgcaacgctgtatctggggtattttcc
attgtttaatgtgtttcggaccaaagcagcaatcccgagctatggatgaa
tgacattctctgcaccaaatacacaactatatattttcataaattgtcgg
cccgaatctcactgtataagaactataaattctggatcgttataatattc
tttttttttcatttacataaagattgcatgaaaatcaggcttttcccaga
ggtgtttttaacatcactcttatgactataatctctacttatctat

gaattctgtgttgagaagaagaataagaaaagcaaagaggaccccagggt
tttaaattgaacaaatggctgtgtcacttgtgcaactggaaagaagagaa
gagagatggagttatagggcacattgaaggtacctttttcagatagtcta
ctacatttgagttgcttattgatcaccaggatggcaatttcctaagagtg
gctctcaggagagctgttatcctgacaacgggacaaatttaaaagttaga
aatgtaattagcttggaggaaggaagaataggaaataagtttttcttttg
aaaacaaaaaactgtgattttctttctttttggctggaggactattacta
gcattaaacactctacaaatattgacatctttataaaaaggactgcttaa
cccccagacaaatgttccaagcttcaccatcattttggtgagaaaaaaaa
cctaaggaatgggttgaagagatgatcaggagttaagaagactggctgct
cttccataggacctgggtccaattacctgcacccacatggtggctcacaa
tctcctgtaacttcagttccagaggatctagtgccaccttgtggcctctg
tgtgtaccaggcaagcgcatagtggactacatatgtgcagggactcatgc
cttcatagtagatagtcatatgtccagggactcatgcattcatgtaacat
taaatgaaaatccttaaaactctaataataataaaaaggttggctatttt
gaaaatacccaagatggtgtgcatgtcaatgcttgtctttacttctgcgg
attttcttactttagtgagatgaagttatatgttaggccagcgaggactt
gttatagacttgggacattttaaaaatttaaaagacaaaagccaaatggt
gctacctagacacttgcttaaaatcaaaatattgtgtcataaaggggtag
aataatccatgcttcattaatgactcataaaagaaaggacttgctctttt
gaactgaaagcaaaatcagctcaaaaatacttctaagatgatggtcatac
tgctgaagatctaattcagaagaaatttatgctcctgcactaaattgtgt
ggtttttctttgtgggttgtgcctgtatcaagatatgagggacctcttat
gatatattatgactgcttcaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_68840886_68842056
seq2: B6Ng01-166N05.g_67_1239

seq1  GAATTCTGTGTTGAGAAGAAGAATAAGAAAAGCAAAGAGGACCCCAGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTTGAGAAGAAGAATAAGAAAAGCAAAGAGGACCCCAGGGT  50

seq1  TTTAAATTGAACAAATGGCTGTGTCACTTGTGCAACTGGAAAGAAGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTGAACAAATGGCTGTGTCACTTGTGCAACTGGAAAGAAGAGAA  100

seq1  GAGAGATGGAGTTATAGGGCACATTGAAGGTACCTTTTTCAGATAGTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATGGAGTTATAGGGCACATTGAAGGTACCTTTTTCAGATAGTCTA  150

seq1  CTACATTTGAGTTGCTTATTGATCACCAGGATGGCAATTTCCTAAGAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTTGAGTTGCTTATTGATCACCAGGATGGCAATTTCCTAAGAGTG  200

seq1  GCTCTCAGGAGAGCTGTTATCCTGACAACGGGACAAATTTAAAAGTTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCAGGAGAGCTGTTATCCTGACAACGGGACAAATTTAAAAGTTAGA  250

seq1  AATGTAATTAGCTTGGAGGAAGGAAGAATAGGAAATAAGTTTTTCTTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAATTAGCTTGGAGGAAGGAAGAATAGGAAATAAGTTTTTCTTTTG  300

seq1  AAAACAAAAAACTGTGATTTTCTTTCTTTTTGGCTGGAGGACTATTACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAAACTGTGATTTTCTTTCTTTTTGGCTGGAGGACTATTACTA  350

seq1  GCATTAAACACTCTACAAATATTGACATCTTTATAAAAAGGACTGCTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAAACACTCTACAAATATTGACATCTTTATAAAAAGGACTGCTTAA  400

seq1  CCCCCAGACAAATGTTCCAAGCTTCACCATCATTTTGGTGAGAAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGACAAATGTTCCAAGCTTCACCATCATTTTGGTGAGAAAAAAAA  450

seq1  CCTAAGGAATGGGTTGAAGAGATGATCAGGAGTTAAGAAGACTGGCTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGGAATGGGTTGAAGAGATGATCAGGAGTTAAGAAGACTGGCTGCT  500

seq1  CTTCCATAGGACCTGGGTCCAATTACCTGCACCCACATGGTGGCTCACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATAGGACCTGGGTCCAATTACCTGCACCCACATGGTGGCTCACAA  550

seq1  TCTCCTGTAACTTCAGTTCCAGAGGATCTAGTGCCACCTTGTGGCCTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGTAACTTCAGTTCCAGAGGATCTAGTGCCACCTTGTGGCCTCTG  600

seq1  TGTGTACCAGGCAAGCGCATAGTGGACTACATATGTGCAGGGACTCATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACCAGGCAAGCGCATAGTGGACTACATATGTGCAGGGACTCATGC  650

seq1  CTTCATAGTAGATAGTCATATGTCCAGGGACTCATGCATTCATGTAACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATAGTAGATAGTCATATGTCCAGGGACTCATGCATTCATGTAACAT  700

seq1  TAAATGAAAATCCTTAAAACTCTAATAATAATAAAAAGGTTGGCTATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAAAATCCTTAAAACTCTAATAATAATAAAAAGGTTGGCTATTTT  750

seq1  GAAAATACCCAAGATGGTGTGCATGTCAATGCTTGTCTTTACTTCTGCGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATACCCAAGATGGTGTGCATGTCAATGCTTGTCTTTACTTCTGCGG  800

seq1  ATTTTCTTACTTTAGTGAGATGAAGTTATATGTTAGGCCAGCGAGGACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTACTTTAGTGAGATGAAGTTATATGTTAGGCCAGCGAGGACTT  850

seq1  GTTATAGACTTGGGACATTTTAAAAATTTAAAAGACAAAAGCCAAATGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAGACTTGGGACATTTTAAAAATTTAAAAGACAAAAGCCAAATGGT  900

seq1  GCTACCTAGACACTTGCTTAAAATCAAAATATTTGTGTCAATAAAGGGGT  950
      ||||||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  GCTACCTAGACACTTGCTTAAAATCAAAATA-TTGTGTC-ATAAAGGGGT  948

seq1  AGAATAATCCATGCTTCATTAATGACTCAT-AAAGAAAGGACTTGCTC-T  998
      |||||||||||||||||||||||||||||| ||||||||||||||||| |
seq2  AGAATAATCCATGCTTCATTAATGACTCATAAAAGAAAGGACTTGCTCTT  998

seq1  TTGAACTGAAAGCAAAATCAGCTCAAAAATACTTCTAAGATGATGGTCAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTGAAAGCAAAATCAGCTCAAAAATACTTCTAAGATGATGGTCAT  1048

seq1  ACTGCTGAGAATTCTAA-TCAGAAGAAATTTATGCT-CTGCACTAAATTG  1096
      |||||||| |  ||||| |||||||||||||||||| |||||||||||||
seq2  ACTGCTGA-AGATCTAATTCAGAAGAAATTTATGCTCCTGCACTAAATTG  1097

seq1  TGTG--TTTTCTTTGTGGGTTGTG-CTGTATCAAGTATTGAGGGAACTCT  1143
      ||||  |||||||||||||||||| ||||||||||   ||||||| ||||
seq2  TGTGGTTTTTCTTTGTGGGTTGTGCCTGTATCAAGATATGAGGGACCTCT  1147

seq1  TATTGATAATTTATGACATGCTTCAAGC  1171
      || |||||  ||||||| ||||||||||
seq2  TA-TGATATATTATGAC-TGCTTCAAGC  1173


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