BAC Information

Click to search

BAC

Clone NameB6Ng01-166N17
Chromosome18 (Build37)
Map Location 89,133,550 - 89,134,676
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039961, LOC100039972, LOC623177, LOC665497, LOC100040003, LOC623208, Socs6
Downstream geneRttn, Cd226, Dok6, LOC383320
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166N17.bB6Ng01-166N17.g
ACCDH958510DH958511
length1,2541,113
definitionDH958510|Mus musculus domesticus DNA, BAC clone: B6Ng01-166N17, 5' end.DH958511|Mus musculus domesticus DNA, BAC clone: B6Ng01-166N17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctaagcagaaaaatcttgcaactcaaacacaaaagtaattttta
catggacataagcaatgctgtggactggcattgtttaggaccacagcatc
tttcactttcacacctcaaaggcaacacaaatccacacaattcaaaagat
cttaagaaatgttcatattatatgctgaactggctcatacctttagctgc
catttggccttagtcacacacataaaaatagtactccaagctcactgcag
actgtaacatgtatttcagctgaaagatggaggagatttctggctcattt
ttttgtatgattcatctgccctaagtttctcctggagccatttcagatca
ttccaagtataaaacacatgatcaaaacctccccaaatactgagaacaga
ggggataaaacaaaatataaactttggacacaggacctagacactctgtg
ttggaactgacctgaaagtcttctctctgaggactatagttcatggtagt
agatggcatcgttctggcttccaaaggagggaagcaactaagagtcctaa
ttagataacataacatgtttatgatctataacaatgactagcatggcaca
ataaccctaaggttgcaggagtggcacctataccctggtggtaaccaact
gctctctaatgtatttcctccacaagaaaaaaatgatgcctagtactcta
agcctagccaactatacagggatagcaaagtcatggatctcatagaaaac
ctacaaatgctagtgtactaatacagaacaattcctaaccacaccctaat
atttgatattatactcacagataagtataggtctcaaccctcctcaaaaa
agtctctttgcaagagatgataatcagtatagaaaaccacaaccatcaaa
attaatagatcaaaagattgtgtggagcccagtcctaactggtacattga
ccatacaacacctacccctaagctcaggatcactgcagagaacaagactg
aaagattgtaagcaggaagtttactatagatttgatctctcagaaatgtc
agagaagcgggggtgggggtggcgccacgcctttaatccagcactccagg
aggcagaggcagcggattttctgagttgagccagctggtctacaaagtga
gagtttcagacgccaggccttactgggaaacctgtccgaaacaaaaaacc
gagcaacgaataaaaagtgccgagagagcggcacacaatgtagagagccc
tcct
gaattctttaattgtacaaaatttaaatactgaaactgttactcacgtga
atggagggtttctgttgcaggttcctggttcctaccagggaatcatggtg
agaggagattgaatatgcagctggtgacattgtgttcccagtcaggaata
agagataactgcttgtgcacagctcacacacttctttcttattgtctagg
atcccagcccttgcaatggtgccatccataagcaacacaagacacagacc
tactgacaggcaccctcagaagctaacctaatacaaataattatccacag
gaatgtccagaatgaacctaatattgatcatttcatacaagcatgttcag
gtaattatctactacgtaattttggattctgtgaaaccaactgtcttagt
cagggtttctattcctgcacaaacatcatgaccaagaagcagttggggag
gaaagggtttattcagcttacacttccatactgctattcatcaccaagga
agtcaggactggaactcaagcaggtcatgaaacaggagctgatgcagagt
ccatggagggatggtctttacaggctagcttcccctgtcttgctcagcct
gctctcttatagaacccaggactaccagcccagagatggcaccacccaca
aggggacctccccccttgatcactaattgagaaaatgccttatagctgga
cctcgtggaggcatttcccctcctgaagctcctttctctgtgataactcc
agcctgtgtcaagttgacacaaaactagccagtacaccaaccaatattaa
ccatcccaataattaacggtcatattttagcttaaaggctggtcttcttt
ttaggctgtaaacaggtcttgatacagagccctactgttttcttaccact
gaatcactttctaactacatcttaaggatgttcttttgaaatgaaattga
ttgctcattggttaaggcaatgctgtcttccagaggatatggtttaattt
cagtacccatgtgatggtcacagccatctgttactccacgtctagtgata
caaatcctcttgtgaactttgtgggcaagtgtacatgcagtggtgtgcca
acactgcgtgcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_89133550_89134676
seq2: B6Ng01-166N17.g_67_1179

seq1  GAATTCTTTAATTGTACAAAATTTAAATACTGAAACTGTTACTCACGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAATTGTACAAAATTTAAATACTGAAACTGTTACTCACGTGA  50

seq1  ATGGAGGGTTTCTGTTGCAGGTTCCTGGTTCCTACCAGGGAATCATGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGGTTTCTGTTGCAGGTTCCTGGTTCCTACCAGGGAATCATGGTG  100

seq1  AGAGGAGATTGAATATGCAGCTGGTGACATTGTGTTCCCAGTCAGGAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGATTGAATATGCAGCTGGTGACATTGTGTTCCCAGTCAGGAATA  150

seq1  AGAGATAACTGCTTGTGCACAGCTCACACACTTCTTTCTTATTGTCTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAACTGCTTGTGCACAGCTCACACACTTCTTTCTTATTGTCTAGG  200

seq1  ATCCCAGCCCTTGCAATGGTGCCATCCATAAGCAACACAAGACACAGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCCCTTGCAATGGTGCCATCCATAAGCAACACAAGACACAGACC  250

seq1  TACTGACAGGCACCCTCAGAAGCTAACCTAATACAAATAATTATCCACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGACAGGCACCCTCAGAAGCTAACCTAATACAAATAATTATCCACAG  300

seq1  GAATGTCCAGAATGAACCTAATATTGATCATTTCATACAAGCATGTTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTCCAGAATGAACCTAATATTGATCATTTCATACAAGCATGTTCAG  350

seq1  GTAATTATCTACTACGTAATTTTGGATTCTGTGAAACCAACTGTCTTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTATCTACTACGTAATTTTGGATTCTGTGAAACCAACTGTCTTAGT  400

seq1  CAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAGTTGGGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAGTTGGGGAG  450

seq1  GAAAGGGTTTATTCAGCTTACACTTCCATACTGCTATTCATCACCAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGTTTATTCAGCTTACACTTCCATACTGCTATTCATCACCAAGGA  500

seq1  AGTCAGGACTGGAACTCAAGCAGGTCATGAAACAGGAGCTGATGCAGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGACTGGAACTCAAGCAGGTCATGAAACAGGAGCTGATGCAGAGT  550

seq1  CCATGGAGGGATGGTCTTTACAGGCTAGCTTCCCCTGTCTTGCTCAGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGAGGGATGGTCTTTACAGGCTAGCTTCCCCTGTCTTGCTCAGCCT  600

seq1  GCTCTCTTATAGAACCCAGGACTACCAGCCCAGAGATGGCACCACCCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTTATAGAACCCAGGACTACCAGCCCAGAGATGGCACCACCCACA  650

seq1  AGGGGACCTCCCCCCTTGATCACTAATTGAGAAAATGCCTTATAGCTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGACCTCCCCCCTTGATCACTAATTGAGAAAATGCCTTATAGCTGGA  700

seq1  CCTCGTGGAGGCATTTCCCCTCCTGAAGCTCCTTTCTCTGTGATAACTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGTGGAGGCATTTCCCCTCCTGAAGCTCCTTTCTCTGTGATAACTCC  750

seq1  AGCCTGTGTCAAGTTGACACAAAACTAGCCAGTACACCAACCAATATTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTGTCAAGTTGACACAAAACTAGCCAGTACACCAACCAATATTAA  800

seq1  CCATCCCAATAATTAACGGTCATATTTTAGCTTAAGGGCTGGTCTTCTTT  850
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCATCCCAATAATTAACGGTCATATTTTAGCTTAAAGGCTGGTCTTCTTT  850

seq1  TTAGGCTGTAAAACAGGTCTTGATACAGGAGGCCCTACTGTTTTCTTTAC  900
      ||||||||| ||||||||||||||||||   |||||||||||||| ||||
seq2  TTAGGCTGT-AAACAGGTCTTGATACAG--AGCCCTACTGTTTTC-TTAC  896

seq1  CACTGAATCACTTTCTAACTACATCTTAAAGGATGTTCTTTTGAAAATGA  950
      ||||||||||||||||||||||||||| ||||||||||||||| ||||||
seq2  CACTGAATCACTTTCTAACTACATCTT-AAGGATGTTCTTTTG-AAATGA  944

seq1  AATTGATTGCTCATTGGTTAAGGGCAATGGCTGTTCTTCCAGAGGATATG  1000
      ||||||||||||||||||||| |||||| |||| ||||||||||||||| 
seq2  AATTGATTGCTCATTGGTTAA-GGCAAT-GCTG-TCTTCCAGAGGATAT-  990

seq1  GGTTTAATTTCCAGTACCCATGTGATGGGTCACAGCCATCTGTAACTCCA  1050
      |||||||||| ||||||||||||||| |||||||||||||||| ||||||
seq2  GGTTTAATTT-CAGTACCCATGTGAT-GGTCACAGCCATCTGTTACTCCA  1038

seq1  CGTCTAGGTGATACAAAACCCTCTTGTGACCTTTGTGGGCAAGTGTACAT  1100
      |||||| ||||||| ||| |||||||||| ||||||||||||||||||||
seq2  CGTCTA-GTGATAC-AAATCCTCTTGTGAACTTTGTGGGCAAGTGTACAT  1086

seq1  GCAGGTGGTGTGCAGACA-TGCGTGCAG  1127
      ||| |||||||||  ||| |||||||||
seq2  GCA-GTGGTGTGCCAACACTGCGTGCAG  1113