BAC Information

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BAC

Clone NameB6Ng01-167B17
Chromosome18 (Build37)
Map Location 85,497,541 - 85,669,370
singlet/doubletdoublet
Overlap genenone
Upstream geneZfp407, Cndp1, EG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik, Cyb5, Fbxo15, 1700034H14Rik, LOC100039765
Downstream geneLOC665382, LOC545269, LOC545270, LOC665402, Neto1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167B17.bB6Ng01-167B17.g
ACCDH958692DH958693
length1,2211,082
definitionDH958692|Mus musculus domesticus DNA, BAC clone: B6Ng01-167B17, 5' end.DH958693|Mus musculus domesticus DNA, BAC clone: B6Ng01-167B17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,668,132 - 85,669,370)(85,497,541 - 85,498,216)
sequence
gaattcactttctcacatcaagtaaagtgaatttgctagggaaaggtttc
tattgcaaggcagacaggagcaagaagctactacaatgtaaacccacaaa
gtctactacacctgaagtgccaggagtgactctgctctggaaagcaaggc
tctagaagacatgcaagtcttgctgacattgccaccagaggcagaagaac
aggaaaatcacccattctccttgccagcctctggaaccctcaatagaggt
accaagaaaaaccagttctgcagaagcaggtgtgagtcccctgcaggcat
atctaatcgatcccaggtacataaaccaaggaggtacagatgcccctact
ctccatttgcctacaaaagtgcacaaaatgtcaaactcatttttatttgt
cattgggaagcaagtttttaacaaacacctctttaaaataagcatgacaa
caagaatacaatgagaaacaaagtgcttgagtgtcccaccttatattagc
taagtgtccaccacactgcccaagtcagaccaaatatccctagtgtaacc
taattcaagaagtctgcataattcaatatgtagtaggcatggtagtcagt
atttatttctaaatggtggaaataagcacttaggggtgatgtattatcat
ttctgtagaatctatggttgtgtttggaaacagcttttgaaataattatt
gagtttcaaacgtatctagatgggaagcagtttagaggtagtgagcaggg
cacagttaatgatgtgttgtcttgcagtgttgagaatatacagagttgac
tgtactgtggagtgagagaagagcatcaaggttaacatgagaaaggaaac
caagattggggaagaaataaaaaacactaaaatgcctatgtaagggacag
cacgtgtacaaggtatagctgtgtcacatacttgctagagaagcaggtat
cttgtaatgacctgaaatgagcagaagagctttggatctttctcactctg
attcatttcgatttacatctctgctccaatcccttgccctaggatatgaa
agcctgaaacctcagtgggtgccctcagactccatctcctctgtactgta
tggtacagactgagctctgttgctgtactggaatttgaacatgtatataa
ttcattactgccagaccggctccgaagtggaaaggatttgaagagagtgt
gaaactgaatgtaagtttgtg
gaattcctaaatggttacaagtaatttcaagccatttatagaattaaagc
tgtaaatagagctctgtaaagtttcacatatcacaggcaagttgcactag
gaaaagaaagcaggtttgaaataaagttacaatcaaggaaaacattcctt
ctacttatagaatagtaatgaggcaactatctagtaactaaaggttataa
actgggaatggacaatatattgaaggtgcaaggataagaagtaaaatatt
gactagtctatgaaaaacttcaaaacaatgatgcacaaggcagattattt
gtctcttgacaaaactatgcttaattatgacatagaaattattgctgtaa
acttataatgaactcatggcactagtaacagataatgaatgtttagtcag
gtaccagcattaacggaaagacatgtgtgcaattatgttgtatcctctta
tcaatctatgacatgactattgcctcaaacttactatgaacttataaagg
taaaagtgtttagaaaactatgtgatcaaccatcctgagaaagtataaat
actaaaaatgacaataacgaggcgattttggtacctctctgtttaatcca
gtatgtgtgtctctgtgtgcacctgaactttctctctttccttttcttct
ttctttcgttttcttttttctttctctctggtttacaaagagttaaggat
ctcaaagcctcccacctggccagcaaggggcctgagtcaaagagaaaaga
actcaagtaactaagccttttttcttcccccctgctgctatcaacaggag
taaattgccagaaaccagtggcttttgtccacagaatagcaagagagagt
taaattgccagaggccatcagcttctggtccttgacctcagtcctcagaa
cagtaagggagagtttgttttgttttgttttttcaagagaacagtttaat
ttatttatacaaagaattccttatatgagcattgcttatatgacttatag
ataaagtgagatgatgttaaaaaacataaatgagatacagatgaattttt
gtataaatacatactattataggatactattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_85668132_85669370
seq2: B6Ng01-167B17.b_50_1270 (reverse)

seq1  CACAAACATTCATTCAGTTT--CACTCTCTTCAGAACTCCTCTCCA-TCC  47
      ||||||| | ||||||||||  ||||||||||  || |||| |||| | |
seq2  CACAAACTTACATTCAGTTTCACACTCTCTTC--AAATCCTTTCCACTTC  48

seq1  GAAGCCGGTTCTTGGCAGTAATGAATAATAATTACATGTTCCATATTCCC  97
      | |||||||   |||||||||||||| |||  |||||||| || ||||| 
seq2  GGAGCCGGT--CTGGCAGTAATGAATTATA--TACATGTT-CAAATTCC-  92

seq1  AAGTACAGCCAACAGAAGGCTCAAGGTTCTTGTACCATTACAGGTACAGA  147
       ||||||| |||||||  |||||  ||   ||||||| |||| |||||||
seq2  -AGTACAG-CAACAGA--GCTCA--GT--CTGTACCA-TACA-GTACAGA  132

seq1  -GAGATGGGGGTCTGGAGGGCACCCACTGAGGTTTCAGGCTTTCATATCC  196
       ||||| || |||| |||||||||||||||||||||||||||||||||||
seq2  GGAGAT-GGAGTCT-GAGGGCACCCACTGAGGTTTCAGGCTTTCATATCC  180

seq1  TAGGGCAAGGGATTGGAGCAGAGATGTAAATCGAAATGAATCAGAGTGAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCAAGGGATTGGAGCAGAGATGTAAATCGAAATGAATCAGAGTGAG  230

seq1  AAAGATCCAAAGCTCTTCTGGCTCATTTCAGGTCATTTACAAGATACCTG  296
      ||||||||||||||||||| ||||||||||||||| ||||||||||||||
seq2  AAAGATCCAAAGCTCTTCT-GCTCATTTCAGGTCA-TTACAAGATACCTG  278

seq1  CCTTCTCTAGCAAGTATGTGACACAGCTATACCTTGTACACGTGCTGTCC  346
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CTTCTCTAGCAAGTATGTGACACAGCTATACCTTGTACACGTGCTGTCC  327

seq1  CTTACATAGGCATTTTAGTGTTTTTTATTTCTTCCCCAATCTTGGTTTCC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATAGGCATTTTAGTGTTTTTTATTTCTTCCCCAATCTTGGTTTCC  377

seq1  -TTCTCATGTTAACCTTGATGCTCTTCTCTCACTCCACAGTACAGTCAAC  445
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATGTTAACCTTGATGCTCTTCTCTCACTCCACAGTACAGTCAAC  427

seq1  TCTGTATATTCTCAACACTGCAAGACAACACATCATTAACTGTGCCCTGC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATATTCTCAACACTGCAAGACAACACATCATTAACTGTGCCCTGC  477

seq1  TCACTACCTCTAAACTGCTTCCCATCTAGATACGTTTGAAACTCAATAAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTACCTCTAAACTGCTTCCCATCTAGATACGTTTGAAACTCAATAAT  527

seq1  TATTTCAAAAGCTGTTTCCAAACACAACCATAGATTCTACAGAAATGATA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAAAAGCTGTTTCCAAACACAACCATAGATTCTACAGAAATGATA  577

seq1  ATACATCACCCCTAAGTGCTTATTTCCACCATTTAGAAATAAATACTGAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCACCCCTAAGTGCTTATTTCCACCATTTAGAAATAAATACTGAC  627

seq1  TACCATGCCTACTACATATTGAATTATGCAGACTTCTTGAATTAGGTTAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGCCTACTACATATTGAATTATGCAGACTTCTTGAATTAGGTTAC  677

seq1  ACTAGGGATATTTGGTCTGACTTGGGCAGTGTGGTGGACACTTAGCTAAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGGATATTTGGTCTGACTTGGGCAGTGTGGTGGACACTTAGCTAAT  727

seq1  ATAAGGTGGGACACTCAAGCACTTTGTTTCTCATTGTATTCTTGTTGTCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGTGGGACACTCAAGCACTTTGTTTCTCATTGTATTCTTGTTGTCA  777

seq1  TGCTTATTTTAAAGAGGTGTTTGTTAAAAACTTGCTTCCCAATGACAAAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATTTTAAAGAGGTGTTTGTTAAAAACTTGCTTCCCAATGACAAAT  827

seq1  AAAAATGAGTTTGACATTTTGTGCACTTTTGTAGGCAAATGGAGAGTAGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGAGTTTGACATTTTGTGCACTTTTGTAGGCAAATGGAGAGTAGG  877

seq1  GGCATCTGTACCTCCTTGGTTTATGTACCTGGGATCGATTAGATATGCCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCTGTACCTCCTTGGTTTATGTACCTGGGATCGATTAGATATGCCT  927

seq1  GCAGGGGACTCACACCTGCTTCTGCAGAACTGGTTTTTCTTGGTACCTCT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGGACTCACACCTGCTTCTGCAGAACTGGTTTTTCTTGGTACCTCT  977

seq1  ATTGAGGGTTCCAGAGGCTGGCAAGGAGAATGGGTGATTTTCCTGTTCTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGGGTTCCAGAGGCTGGCAAGGAGAATGGGTGATTTTCCTGTTCTT  1027

seq1  CTGCCTCTGGTGGCAATGTCAGCAAGACTTGCATGTCTTCTAGAGCCTTG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTGGTGGCAATGTCAGCAAGACTTGCATGTCTTCTAGAGCCTTG  1077

seq1  CTTTCCAGAGCAGAGTCACTCCTGGCACTTCAGGTGTAGTAGACTTTGTG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAGAGCAGAGTCACTCCTGGCACTTCAGGTGTAGTAGACTTTGTG  1127

seq1  GGTTTACATTGTAGTAGCTTCTTGCTCCTGTCTGCCTTGCAATAGAAACC  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTACATTGTAGTAGCTTCTTGCTCCTGTCTGCCTTGCAATAGAAACC  1177

seq1  TTTCCCTAGCAAATTCACTTTACTTGATGTGAGAAAGTGAATTC  1239
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTAGCAAATTCACTTTACTTGATGTGAGAAAGTGAATTC  1221

seq1: chr18_85497541_85498216
seq2: B6Ng01-167B17.g_493_1149

seq1  TGTGCAATTATGTTGTATCCTCTTATCAATCTATGACATGACTATTGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAATTATGTTGTATCCTCTTATCAATCTATGACATGACTATTGCCT  50

seq1  CAAACTTACTATGAACTTATAAAGGTAAAAGTGTTTAGAAAACTATGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTACTATGAACTTATAAAGGTAAAAGTGTTTAGAAAACTATGTGA  100

seq1  TCAACCATCCTGAGAAAGTATAAATACTAAAAATGACAATAACGAGGCGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCATCCTGAGAAAGTATAAATACTAAAAATGACAATAACGAGGCGA  150

seq1  TTTTGGTACCTCTCTGTTTAATCCAGTATGTGTGTCTCTGTGTGCACCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTACCTCTCTGTTTAATCCAGTATGTGTGTCTCTGTGTGCACCTG  200

seq1  AACTTTCTCTCTTTCCTTTTCTTCTTTCTTTCGTTTTCTTTTTTCTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCTCTCTTTCCTTTTCTTCTTTCTTTCGTTTTCTTTTTTCTTTCT  250

seq1  CTCTGGTTTACAAAGAGTTAAGGATCTCAAAGCCTCCCACCTGGCCAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTTTACAAAGAGTTAAGGATCTCAAAGCCTCCCACCTGGCCAGCA  300

seq1  AGGGGCCTGAGTCAAAGAGAAAAGAACTCAAGTAACTAAGCCTTTTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCCTGAGTCAAAGAGAAAAGAACTCAAGTAACTAAGCCTTTTTTCT  350

seq1  TCCCCCCTGCTGCTATCAACAGGAGTAAATTGCCAGAAACCAGTGGCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCTGCTGCTATCAACAGGAGTAAATTGCCAGAAACCAGTGGCTTT  400

seq1  TGTCCACAGAATAGCAAGAGAGAGTTAAATTGCCAGAGGCCATCAGCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCACAGAATAGCAAGAGAGAGTTAAATTGCCAGAGGCCATCAGCTTC  450

seq1  TGGTCCTTGACCTCAGTCCTCAGAACAGTAAGGGAGAGTTTTGTTTTGTT  500
      |||||||||||||||||||||||||||||||||||||| ||||||||| |
seq2  TGGTCCTTGACCTCAGTCCTCAGAACAGTAAGGGAGAG-TTTGTTTTG-T  498

seq1  TTTGTTTTTTCAAGAGAACAGTTTAATTTTATTTATACAAAGAATTCCTT  550
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTGTTTTTTCAAGAGAACAGTTTAA-TTTATTTATACAAAGAATTCCTT  547

seq1  ATATGAGCATTGCTTATATGGACTTTATAGATAAAAGTTGAGGATGATGT  600
      ||||||||||||||||||| ||| |||||||||||   ||| ||||||||
seq2  ATATGAGCATTGCTTATAT-GAC-TTATAGATAAA--GTGA-GATGATGT  592

seq1  TAAAAAACAATAAAATGAGATAAACAGTATGAAATTTTTTGTATTAAATA  650
      |||||||||   |||||||||  |||| |||||  |||||||| ||||||
seq2  TAAAAAACA--TAAATGAGAT--ACAG-ATGAA--TTTTTGTA-TAAATA  634

seq1  CCATACCTATTATAGTATAACTATTT  676
       |||| ||||||||| || |||||||
seq2  -CATA-CTATTATAGGAT-ACTATTT  657