BAC Information

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BAC

Clone NameB6Ng01-167G15
Chromosome18 (Build37)
Map Location 62,504,067 - 62,649,069
singlet/doubletdoublet
Overlap geneHtr4
Upstream genePpargc1b, LOC667675, 4933429F08Rik, Csnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3, Sh3tc2, Adrb2
Downstream geneFbxo38, Spink10, EG408198, 2700046A07Rik, Apcdd1, Napg, 9430028L06Rik, 9030411M15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167G15.bB6Ng01-167G15.g
ACCDH958922DH958923
length204981
definitionDH958922|Mus musculus domesticus DNA, BAC clone: B6Ng01-167G15, 5' end.DH958923|Mus musculus domesticus DNA, BAC clone: B6Ng01-167G15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,648,866 - 62,649,069)(62,504,067 - 62,505,049)
sequence
cacccatatcaagacaacactgcactcgatcatatcacagtctacctttt
gccacatgacataacttatttgtagatacatggggacagggtgtggacct
cattgagtgggcattattttgcccaacacggctgattttgagctgtccac
agatcagtctgtggctcgagagatgtagagtggctgtggcgggggggggg
gggg
gaattctagggggggggttgtcccctatgtttcttttgggggctctggag
tagacggctatgttcttttctggggagggtgggaggaaaaggaagcagtt
atctctaattttgcagtggctgctcttcccagatcttctttttgttgggg
gagaataactcactggttctctcttctctgtaaggcagggaagctacaca
atgtatctgtaaaagcttgctccttcacttcagaggcagcttgaagaagg
cttatatttttcaaaacctactttattcagggttcttaaatgcttcaacc
tcccttctaccccactgaccagagttaggggaaaagaaggttaataggaa
aagggaactgtgggcctatttagaggtagttccttggggcaatttcactc
ttctttgacagaatgccagcagtccagttcaatagcgaacaccaaacaca
atttagtagcagtgtcatgatccagcagaaacggcaaggcgcaagtcagt
ggaagtgtccagaatcagccggaataccactagaagttctttggcacatt
tctctttatgaagtgaaggccaacaaagaccagggaagaccaacgaagtg
ttgcatgctgtagaaatgcaagagcattctctcactgttcatggggttct
attttatagttttttttttttctaaaaatataaagtcatgtaccatctca
agtgtttgttttcagtaaagcatcatgtgacctctcacaagacatcttcc
agaaagacatgcgacacgattgagttgttaaagaaaccagaaatttccac
ttcagcctgaacttactgttttgtatagctgcttacactccactgatata
tggtttccttgcctcaggtcacctgaaagcaagccacatctgtattcctt
tcttctgttgcttatttacaggaaaaagcatctggcttttgatgactttt
tcccatgatatttagttcagaaaatagaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_62648866_62649069
seq2: B6Ng01-167G15.b_52_255 (reverse)

seq1  CCCCCCCCCCCCCCGCCACAGCCACTCTACATCTCTCGAGCCACAGACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCCCGCCACAGCCACTCTACATCTCTCGAGCCACAGACTG  50

seq1  ATCTGTGGACAGCTCAAAATCAGCCGTGTTGGGCAAAATAATGCCCACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGGACAGCTCAAAATCAGCCGTGTTGGGCAAAATAATGCCCACTC  100

seq1  AATGAGGTCCACACCCTGTCCCCATGTATCTACAAATAAGTTATGTCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGTCCACACCCTGTCCCCATGTATCTACAAATAAGTTATGTCATG  150

seq1  TGGCAAAAGGTAGACTGTGATATGATCGAGTGCAGTGTTGTCTTGATATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAAAGGTAGACTGTGATATGATCGAGTGCAGTGTTGTCTTGATATG  200

seq1  GGTG  204
      ||||
seq2  GGTG  204

seq1: chr18_62504067_62505049
seq2: B6Ng01-167G15.g_66_1046

seq1  GAATTCTAGGGGGGGGGTTGTCCCCTATGTTTCTTTTGGGGGCTCTGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGGGGGGGGTTGTCCCCTATGTTTCTTTTGGGGGCTCTGGAG  50

seq1  TAGACGGCTATGTTCTTTTCTGGGGAGGGTGGGAGGAAAAGGAAGCAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACGGCTATGTTCTTTTCTGGGGAGGGTGGGAGGAAAAGGAAGCAGTT  100

seq1  ATCTCTAATTTTGCAGTGGCTGCTCTTCCCAGATCTTCTTTTTGTTGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTAATTTTGCAGTGGCTGCTCTTCCCAGATCTTCTTTTTGTTGGGG  150

seq1  GAGAATAACTCACTGGTTCTCTCTTCTCTGTAAGGCAGGGAAGCTACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATAACTCACTGGTTCTCTCTTCTCTGTAAGGCAGGGAAGCTACACA  200

seq1  ATGTATCTGTAAAAGCTTGCTCCTTCACTTCAGAGGCAGCTTGAAGAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCTGTAAAAGCTTGCTCCTTCACTTCAGAGGCAGCTTGAAGAAGG  250

seq1  CTTATATTTTTCAAAACCTACTTTATTCAGGGTTCTTAAATGCTTCAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATTTTTCAAAACCTACTTTATTCAGGGTTCTTAAATGCTTCAACC  300

seq1  TCCCTTCTACCCCACTGACCAGAGTTAGGGGAAAAGAAGGTTAATAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCTACCCCACTGACCAGAGTTAGGGGAAAAGAAGGTTAATAGGAA  350

seq1  AAGGGAACTGTGGGCCTATTTAGAGGTAGTTCCTTGGGGCAATTTCACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAACTGTGGGCCTATTTAGAGGTAGTTCCTTGGGGCAATTTCACTC  400

seq1  TTCTTTGACAGAATGCCAGCAGTCCAGTTCAATAGCGAACACCAAACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGACAGAATGCCAGCAGTCCAGTTCAATAGCGAACACCAAACACA  450

seq1  ATTTAGTAGCAGTGTCATGATCCAGCAGAAACGGCAAGGCGCAAGTCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTAGCAGTGTCATGATCCAGCAGAAACGGCAAGGCGCAAGTCAGT  500

seq1  GGAAGTGTCCAGAATCAGCCGGAATACCACTAGAAGTTCTTTGGCACATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGTCCAGAATCAGCCGGAATACCACTAGAAGTTCTTTGGCACATT  550

seq1  TCTCTTTATGAAGTGAAGGCCAACAAAGACCAGGGAAGACCAACGAAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTATGAAGTGAAGGCCAACAAAGACCAGGGAAGACCAACGAAGTG  600

seq1  TTGCATGCTGTAGAAATGCAAGAGCATTCTCTCACTGTTCATGGGGTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGCTGTAGAAATGCAAGAGCATTCTCTCACTGTTCATGGGGTTCT  650

seq1  A-TTTATAG--TTTTTTTTTTCTAAAAATATAAAGTCATGTACCATCTCA  697
      | |||||||  |||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATAGTTTTTTTTTTTTCTAAAAATATAAAGTCATGTACCATCTCA  700

seq1  AGTGTTTGTTTTCAGTAAAGCATCATGTGACCTCTCACAAGACATCTTCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTGTTTTCAGTAAAGCATCATGTGACCTCTCACAAGACATCTTCC  750

seq1  AGAAAGACATGCGACACGATTGAGTTGTTAAAGAAACCAGAAATTTCCAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGACATGCGACACGATTGAGTTGTTAAAGAAACCAGAAATTTCCAC  800

seq1  TTCAGCCTGAACTTACTG-TTTGTATAGCTGCATACACTTCCACTGATAT  846
      |||||||||||||||||| ||||||||||||| ||||| |||||||||||
seq2  TTCAGCCTGAACTTACTGTTTTGTATAGCTGCTTACAC-TCCACTGATAT  849

seq1  ATGGTTTCCTTGCCTCAGGTCACCCTGAAAGCAAGCCACATCTGTATTCC  896
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATGGTTTCCTTGCCTCAGGTCA-CCTGAAAGCAAGCCACATCTGTATTCC  898

seq1  TTTCTTCCTGTTGCTTA-TTACAGGCAAAAGGCATCT-GCTTTTGATGAC  944
      |||||| |||||||||| ||||||| |||| |||||| ||||||||||||
seq2  TTTCTT-CTGTTGCTTATTTACAGG-AAAAAGCATCTGGCTTTTGATGAC  946

seq1  TTTTTCCCATGGATATTTAGTTCCAGAAAATACAGAGGT  983
      |||||||||| ||||||||||| ||||||||  ||||||
seq2  TTTTTCCCAT-GATATTTAGTT-CAGAAAAT--AGAGGT  981