BAC Information

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BAC

Clone NameB6Ng01-167K04
Chromosome18 (Build37)
Map Location 50,171,671 - 50,290,190
singlet/doubletdoublet
Overlap geneTnfaip8, Hsd17b4
Upstream geneDtwd2, Dmxl1
Downstream geneLOC626721, LOC667233, Gm93, Hdhd1a, LOC100042373, LOC100042385, Prr16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167K04.bB6Ng01-167K04.g
ACCDH959076DH959077
length1,1321,122
definitionDH959076|Mus musculus domesticus DNA, BAC clone: B6Ng01-167K04, 5' end.DH959077|Mus musculus domesticus DNA, BAC clone: B6Ng01-167K04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,289,030 - 50,290,190)(50,171,671 - 50,172,794)
sequence
gaattccatacaatgaatatttataccactttatcaattcttttacatga
gaaagtctatagaagtaatttacttcagaaagtgacgtaagccaggcatg
gtggcgaacacctgtaatctcaacaacccagggctaaaaaagattctgtc
ttaaaaataaataaataaataaataaataaaaagccaatctttataaagg
aaaaaaaggtagccttgaactaaaaaaaatatatatttctgacagaaata
aaaactatgaaatgaaatcttaattgcaccagaaggacagagggtacttg
tgaaaactgtatttttgctaacagctactggtttaaaagtaagacacaac
aacttaccaatgactaatgctcctctttctgcaaacgccagggcgtaagc
tcggcccaatcctaatgagaaacaagggaaacagaaagttgaaagacctc
agcatgattatttgagcccatgaagcctggtccccatttgaaagtaataa
gtcaacaattcgttacagtaggagaagatggtacctccggtggtactctc
aacatcctctccactcagaccctcttctgtctgcagaagttaaacaagtt
aaagccatgttttcccacccgtttcctaccattccctgggctgctagaac
accgcatgtgaactggggtccaccactacgcgcaatcaggacatgttaga
ggcagaagtgggagggtatcgccttacccgggctctagcgcttgctgctc
acgcagctgcttctcttcaaatacccatattttaaaacagagccccaaga
ggcaacttcttaacctggtctcctaatcagtgcacggcagtccccttacc
tcaggaccctaatgatctagggtacttggactctggcagagatccgatga
ctgctcaaaggtgtgacttccaagccccgcctgaacccgaatctctctta
tctaaaagtctagtgatttctatagcctgcgctgacctcaatgtgcagct
gtcactgcaaatcacttcactctgatctatgacactgcagagtgagatgt
ttgggaactgacttggagtacagcaggttgagattttacctctggctact
ctttaattttttctcagtttagttgacccatt
gaattcttgactcacatctcagaggcctccaagaccaggggccagacttt
cttgccccatctatggatgggggtagtggagtgaatccaaagagatggat
aatggtatacagccaagaagtgaacgcatgcttcaaaccaatagaactga
gaagaaaggtgagttgagctcaatgaatgaggggcaggaactggacaatg
ccctttagattcatgggtcactcttcccattgtttatgtatgcacttgct
atatgacatacacgttcaacagtgcccctagtttctagccccttgcgtcg
gaaattcatttaagtccgtttaccagatctggaatccaaggattaaaaag
ttaaacagctttgagtggaaattctctccacgttttctctctgtcttctg
aatgttaatgggagtcttcttccgtcctccaggttttagcttgtgtggtc
taagacgcaaacactgttttccccagcttgaccatcactaaagggtttcc
cttgctttcagtttaagccctctcacctagcatgttaaggctagttcata
tctacctgtccatcccagcttcctctttgaaatcactccatctctgctgg
ctggaactatttcttccctccatagactttttagtcttctcccttttctg
tgggaagcacctctcccgctcgaactggctgcttcctttagagctaatgc
tttgagatattcccaagcatgtccgctgtcctgtgtaccgtgtaagctcc
cttctggacatttctagagatttagcgtactgtctaataattttgatcta
ttggcctgcctccctcagccccagggagtgggttgtgagagcatgtgttg
aagagctagacacttttctaaggggttaatttgatcaaattattctgtcc
ttacagaaatgctttacagcttacatcgtatgctgtttatttctctaatt
aaaaaaaaattattttaaaggctagtagatttaattctggcttactgtac
agattttgtgctactagttggtagaacagacctgtcctgggcatggtagt
gagtagagctgtttattatgaacctatcaaaagggaagctttatggaatg
gagggctgcatcgctgtcagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_50289030_50290190
seq2: B6Ng01-167K04.b_49_1180 (reverse)

seq1  AATGTGTCAACTAAAACTGAAGAAAAAAATTAAAAAGAGTTTAAGCCAGA  50
      |||| ||||||| |||||||   ||||||||  |||||||   |||||||
seq2  AATGGGTCAACT-AAACTGA--GAAAAAATT--AAAGAGT---AGCCAGA  42

seq1  -GTAAAATCTTCCACCCTTGGCTGTTAACTTCACAGGTCAGTTCCCCAAA  99
       |||||||||  || |||  |||||  |||   || ||||||| ||||||
seq2  GGTAAAATCT--CAACCT--GCTGT--ACT--CCAAGTCAGTT-CCCAAA  83

seq1  CATCCTCACTCCTTGCCAGTGTCATAGATTCAGAGTTGAAGTGATTTGCA  149
      ||| |||||||  || |||||||||||| |||||| ||||||||||||||
seq2  CAT-CTCACTC--TG-CAGTGTCATAGA-TCAGAG-TGAAGTGATTTGCA  127

seq1  GTTGACAGCTGCACATTTGAGGTTCAGCGCAGGCTATAGAAATCACTAGA  199
      | ||||||||||||| |||||| |||||||||||||||||||||||||||
seq2  G-TGACAGCTGCACA-TTGAGG-TCAGCGCAGGCTATAGAAATCACTAGA  174

seq1  CCTTTTAGAATAAGAGAGATTCGGGTTTCAGGCGGGGCTTTGGAAGTCAC  249
       ||||||| |||||||||||||||| |||||||||||| |||||||||||
seq2  -CTTTTAG-ATAAGAGAGATTCGGG-TTCAGGCGGGGC-TTGGAAGTCAC  220

seq1  ACCTTTGAGCAGTCATCGGATCTCTGCCAGAGTCCAAGTACCCTAGATCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGAGCAGTCATCGGATCTCTGCCAGAGTCCAAGTACCCTAGATCA  270

seq1  TTAGGGTCCTGAGGTAAGGGGACTGCCGTGCACTGATTAGGAGACCAGGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGTCCTGAGGTAAGGGGACTGCCGTGCACTGATTAGGAGACCAGGT  320

seq1  TAAGAAGTTGCCTCTTGGGGCTCTGTTTTAAAATATGGGTATTTGAAGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGTTGCCTCTTGGGGCTCTGTTTTAAAATATGGGTATTTGAAGAG  370

seq1  AAGCAGCTGCGTGAGCAGCAAGCGCTAGAGCCCGGGTAAGGCGATACCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCTGCGTGAGCAGCAAGCGCTAGAGCCCGGGTAAGGCGATACCCT  420

seq1  CCCACTTCTGCCTCTAACATGTCCTGATTGCGCGTAGTGGTGGACCCCAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTCTGCCTCTAACATGTCCTGATTGCGCGTAGTGGTGGACCCCAG  470

seq1  TTCACATGCGGTGTTCTAGCAGCCCAGGGAATGGTAGGAAACGGGTGGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATGCGGTGTTCTAGCAGCCCAGGGAATGGTAGGAAACGGGTGGGA  520

seq1  AAACATGGCTTTAACTTGTTTAACTTCTGCAGACAGAAGAGGGTCTGAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGGCTTTAACTTGTTTAACTTCTGCAGACAGAAGAGGGTCTGAGT  570

seq1  GGAGAGGATGTTGAGAGTACCACCGGAGGTACCATCTTCTCCTACTGTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGATGTTGAGAGTACCACCGGAGGTACCATCTTCTCCTACTGTAA  620

seq1  CGAATTGTTGACTTATTACTTTCAAATGGGGACCAGGCTTCATGGGCTCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATTGTTGACTTATTACTTTCAAATGGGGACCAGGCTTCATGGGCTCA  670

seq1  AATAATCATGCTGAGGTCTTTCAACTTTCTGTTTCCCTTGTTTCTCATTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATCATGCTGAGGTCTTTCAACTTTCTGTTTCCCTTGTTTCTCATTA  720

seq1  GGATTGGGCCGAGCTTACGCCCTGGCGTTTGCAGAAAGAGGAGCATTAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGGGCCGAGCTTACGCCCTGGCGTTTGCAGAAAGAGGAGCATTAGT  770

seq1  CATTGGTAAGTTGTTGTGTCTTACTTTTAAACCAGTAGCTGTTAGCAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGTAAGTTGTTGTGTCTTACTTTTAAACCAGTAGCTGTTAGCAAAA  820

seq1  ATACAGTTTTCACAAGTACCCTCTGTCCTTCTGGTGCAATTAAGATTTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTTTTCACAAGTACCCTCTGTCCTTCTGGTGCAATTAAGATTTCA  870

seq1  TTTCATAGTTTTTATTTCTGTCAGAAATATATATTTTTTTTAGTTCAAGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAGTTTTTATTTCTGTCAGAAATATATATTTTTTTTAGTTCAAGG  920

seq1  CTACCTTTTTTTCCTTTATAAAGATTGGCTTTTTATTTATTTATTTATTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTTTTTTCCTTTATAAAGATTGGCTTTTTATTTATTTATTTATTT  970

seq1  ATTTATTTTTAAGACAGAATCTTTTTTAGCCCTGGGTTGTTGAGATTACA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTTAAGACAGAATCTTTTTTAGCCCTGGGTTGTTGAGATTACA  1020

seq1  GGTGTTCGCCACCATGCCTGGCTTACGTCACTTTCTGAAGTAAATTACTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTCGCCACCATGCCTGGCTTACGTCACTTTCTGAAGTAAATTACTT  1070

seq1  CTATAGACTTTCTCATGTAAAAGAATTGATAAAGTGGTATAAATATTCAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGACTTTCTCATGTAAAAGAATTGATAAAGTGGTATAAATATTCAT  1120

seq1  TGTATGGAATTC  1161
      ||||||||||||
seq2  TGTATGGAATTC  1132

seq1: chr18_50171671_50172794
seq2: B6Ng01-167K04.g_69_1190

seq1  GAATTCTTGACTCACATCTCAGAGGCCTCCAAGACCAGGGGCCAGACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGACTCACATCTCAGAGGCCTCCAAGACCAGGGGCCAGACTTT  50

seq1  CTTGCCCCATCTATGGATGGGGGTAGTGGAGTGAATCCAAAGAGATGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCCCATCTATGGATGGGGGTAGTGGAGTGAATCCAAAGAGATGGAT  100

seq1  AATGGTATACAGCCAAGAAGTGAACGCATGCTTCAAACCAATAGAACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTATACAGCCAAGAAGTGAACGCATGCTTCAAACCAATAGAACTGA  150

seq1  GAAGAAAGGTGAGTTGAGCTCAATGAATGAGGGGCAGGAACTGGACAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAGGTGAGTTGAGCTCAATGAATGAGGGGCAGGAACTGGACAATG  200

seq1  CCCTTTAGATTCATGGGTCACTCTTCCCATTGTTTATGTATGCACTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTAGATTCATGGGTCACTCTTCCCATTGTTTATGTATGCACTTGCT  250

seq1  ATATGACATACACGTTCAACAGTGCCCCTAGTTTCTAGCCCCTTGCGTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGACATACACGTTCAACAGTGCCCCTAGTTTCTAGCCCCTTGCGTCG  300

seq1  GAAATTCATTTAAGTCCGTTTACCAGATCTGGAATCCAAGGATTAAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCATTTAAGTCCGTTTACCAGATCTGGAATCCAAGGATTAAAAAG  350

seq1  TTAAACAGCTTTGAGTGGAAATTCTCTCCACGTTTTCTCTCTGTCTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAGCTTTGAGTGGAAATTCTCTCCACGTTTTCTCTCTGTCTTCTG  400

seq1  AATGTTAATGGGAGTCTTCTTCCGTCCTCCAGGTTTTAGCTTGTGTGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAATGGGAGTCTTCTTCCGTCCTCCAGGTTTTAGCTTGTGTGGTC  450

seq1  TAAGACGCAAACACTGTTTTCCCCAGCTTGACCATCACTAAAGGGTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACGCAAACACTGTTTTCCCCAGCTTGACCATCACTAAAGGGTTTCC  500

seq1  CTTGCTTTCAGTTTAAGCCCTCTCACCTAGCATGTTAAGGCTAGTTCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTTCAGTTTAAGCCCTCTCACCTAGCATGTTAAGGCTAGTTCATA  550

seq1  TCTACCTGTCCATCCCAGCTTCCTCTTTGAAATCACTCCATCTCTGCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTGTCCATCCCAGCTTCCTCTTTGAAATCACTCCATCTCTGCTGG  600

seq1  CTGGAACTATTTCTTCCCTCCATAGACTTTTTAGTCTTCTCCCTTTTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACTATTTCTTCCCTCCATAGACTTTTTAGTCTTCTCCCTTTTCTG  650

seq1  TGGGAAGCACCTCTCCCGCTCGAACTGGCTGCTTCCTTTAGAGCTAATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGCACCTCTCCCGCTCGAACTGGCTGCTTCCTTTAGAGCTAATGC  700

seq1  TTTGAGATATTCCCAAGCATGTCCGCTGTCCTGTGTACCGTGTAAGCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGATATTCCCAAGCATGTCCGCTGTCCTGTGTACCGTGTAAGCTCC  750

seq1  CTTCTGGACATTTCTAGAGATTTAGCGTACTGTCTAATAATTTTGATCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGACATTTCTAGAGATTTAGCGTACTGTCTAATAATTTTGATCTA  800

seq1  TTGGCCTGCCTCCCTCAGCCCCAGGGAGTGGGTTGTGAGAGCATGTGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTGCCTCCCTCAGCCCCAGGGAGTGGGTTGTGAGAGCATGTGTTG  850

seq1  AAGAGCTAGACACTTTTCTAAGGGGTTAATTTGATCAAATTATTCTGTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTAGACACTTTTCTAAGGGGTTAATTTGATCAAATTATTCTGTCC  900

seq1  TTACAGAAATGCTTTACAGCTTACATCGTATGCTGTTTATTTCTCTAATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAAATGCTTTACAGCTTACATCGTATGCTGTTTATTTCTCTAATT  950

seq1  AAAAAAAAATTATTTTAAAGGCTAGTAGATTTAATTCTGGCTTACTGTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAAAAAAAATTATTTTAAAGGCTAGTAGATTTAATTCTGGCTTACTG-TA  999

seq1  CAGATTTTGTGCTACTAGTTGGTAGAAACAGGACCTGTCCTGGGCATGGT  1050
      ||||||||||||||||||||||||| |||| |||||||||||||||||||
seq2  CAGATTTTGTGCTACTAGTTGGTAG-AACA-GACCTGTCCTGGGCATGGT  1047

seq1  AGTGAGTAGAGCTGTGTATTATGAACCTATCAAAAAGGTAGCTTAATGGA  1100
      ||||||||||||||| ||||||||||||||||||| || ||||| |||||
seq2  AGTGAGTAGAGCTGTTTATTATGAACCTATCAAAAGGGAAGCTTTATGGA  1097

seq1  AT-GAGGGCTGCATCGCTGTCAGTT  1124
      || ||||||||||||||||||||||
seq2  ATGGAGGGCTGCATCGCTGTCAGTT  1122