BAC Information

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BAC

Clone NameB6Ng01-168A08
Chromosome18 (Build37)
Map Location 51,487,371 - 51,637,975
singlet/doubletdoublet
Overlap genenone
Upstream geneHdhd1a, LOC100042373, LOC100042385, Prr16
Downstream geneEG240289, Ftmt, Srfbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168A08.bB6Ng01-168A08.g
ACCDH959367DH959368
length1,1801,181
definitionDH959367|Mus musculus domesticus DNA, BAC clone: B6Ng01-168A08, 5' end.DH959368|Mus musculus domesticus DNA, BAC clone: B6Ng01-168A08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,636,765 - 51,637,975)(51,487,371 - 51,488,103)
sequence
gaattcttttgcaatggttaaaaaaacatgtgtatttgctgtctctaaga
atgaagggactagggttataggatgcagattcatgggataatcaaaagag
aactttgagtaatgactgaattgatatgtaaataaaaaactgggttttgg
cttataagaaatgagctcactagatagtttttgagtcatttgtttcaaca
cttccagatatgccttcccttagaaacccctctctaaatccagactggtg
tttggcaaaatgtgagccaaataacctcaaatctttcaacctgtggagga
gaaaattggtctcctgaaatagtggcaggatatacaaatcataaacagaa
ctctaaagataaggattttattctaggttcaggcacttgttgtctaaaaa
gcttttgataaaccatggcatttctctgaatctatgcttaattcttgaat
gaaggtatatatatatatatcatgtgtgctaactctatataattcataaa
gaatcataaagtacctacttaaggtaaaataaccaatgtaaaaaatacat
catgaaaaatgcataaaaaaactaacatatgacaaacacatgattaagtc
ttattggcatgatgtcattgtagtcttttaaattatcttaatatctatca
atttattaataatgctttattatttcttaagaaatttctgattattgatg
agatcaatcagaacccaagccagagccacactgtagaagtatttacagac
taagcaaattcaagttgaaggaacttcagtaattactgaggtagctgaac
cccgcagcagtttttctttttattagtcaataaataatctacctatggtc
ccttaggaaatgtgttaaccattgataaacaaattagtttctgcttctag
tcactgggaaacactataggatgattcatatcaaaatgtctgtcttttat
cttttaatttgtggcttgatagagttaatttgtttgcagcctaagtgtct
tgtacatacattgtgcaacatattaaaatcactaggtctttattatacca
atttgctcagctggaaagtagtagctcaataagaatctttacaagaaaat
ttaaacatgctgtggcttaattttggactcaacttaagaaacccagttca
agatcttaaaataaccgtttagcttacttc
gaattccatgaaaacattaaacaggaatccataatatatacataaagaaa
aagtaggatgagaaaaattaatttaaaaagatactagctgagcagtggta
gcacatgcctttaatcccagcacttggaaggcagaggcaggcagatcaag
gccagcctggtctacagagtgagttcctggacagccagggctacacagaa
aaaacatgtctctaaaaaccaaccaacgaaccaaccaaaaaacaaaaacc
catacaaacaaaaaagaaactatataaacgataagagccctcccatgacc
ttatgagacaagggacctccaaagatgctattgaatttattttctgttgg
tcatctactgctgagcatgtagcctatgcttaagagtagtttttcctcag
taagacactcttggaagaaactaaaatttcacttgcaagtgcttatcaac
tggagatagcttttgagttagagattagggcacctgtccacttctttcag
ctctagaacctcagttgttttgtacccatgcaggtctcgagtctctgtga
gttcaactgtgcactgatcatggttttgtagtatcctccattccctctgg
ctcttacattctttttgcctcctcttctgtatagttccctgaacaataag
aagaacttgatggagacatcctatttaggactgagtgatccaagatctct
cattctcttaatattgtctgactatgggtctctgtatttctttccatatt
ctgcaggaggaaagttctctgatcatggctaagtaatgccctgatctatg
agtatagcaaattgtcattagtagtcattttattgttatattcctgtagt
agaacaggagtgtttggttctagtagcagtgttgggtatgggttgcatca
tgtgtagtgagccttaagtcaaatcagatattggttggttactcctacag
ctttggcagatctttaaacttgtttcctaaaacagtctagttggattggt
agctggaaataacttcataattttgcatagtttgaagtagaaggttatag
gaatatttaacaagtgagactttacatgtataccttgtatgtgaccataa
attaagatgaagtaaacatgaattgctggaaaatatggaccacagaactc
attggacttaggaatgaactggtgcctcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_51636765_51637975
seq2: B6Ng01-168A08.b_47_1226 (reverse)

seq1  GAAGTTAAAGCTAAATACGTTTATTTTTTATGATCTTGGAAACTGTGTTT  50
      |||||  |||||||  ||| |||  ||||| |||||||  ||||| ||||
seq2  GAAGT--AAGCTAA--ACGGTTA--TTTTAAGATCTTG--AACTGGGTTT  42

seq1  CTTATAGTTTGAGTCAAAATATAAGCCACAGGGCATGTTTAAAATGTTTC  100
      |||| || ||||||| |||  |||||||||  |||||||||||   ||| 
seq2  CTTA-AG-TTGAGTCCAAAATTAAGCCACA--GCATGTTTAAA---TTTT  85

seq1  TTTGTAAAGA-TCTTATTGGAAGGCTACTTACTCTCCAGCTGAGGCAAAA  149
       ||||||||| ||||||||    ||||| |||| ||||||||||   |||
seq2  CTTGTAAAGATTCTTATTG---AGCTAC-TACTTTCCAGCTGAG--CAAA  129

seq1  TTGGTTATAATAAAGACCTAGGTGATTTTTAATTATGTTTGGCACAATGT  199
      |||| ||||||||||||||| ||||||||  | ||||||  |||||||||
seq2  TTGG-TATAATAAAGACCTA-GTGATTTT--AATATGTT--GCACAATGT  173

seq1  ATGTACCAAGACACCTTAGGCTGCAAACAAATTAACTTCTTATCAAGCCA  249
      ||||| ||||||| |||||||||||||||||||||||   ||||||||||
seq2  ATGTA-CAAGACA-CTTAGGCTGCAAACAAATTAACT--CTATCAAGCCA  219

seq1  CAAATTAAAAGATAAAAAGACAGACATTTTGATATGAATCATCCTATAGT  299
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAAATTAAAAGAT-AAAAGACAGACATTTTGATATGAATCATCCTATAGT  268

seq1  GTTTCCCAGTGACTAGAAGCAGAAACTAATTTGTTTATCAATGGTTAACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCAGTGACTAGAAGCAGAAACTAATTTGTTTATCAATGGTTAACA  318

seq1  CATTTCCTAAGGGACCATAGGTAGATTATTTATTGACTAATAAAAAGAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCTAAGGGACCATAGGTAGATTATTTATTGACTAATAAAAAGAAA  368

seq1  AACTGCTGCGGGGTTCAGCTACCTCAGTAATTACTGAAGTTCCTTCAACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTGCGGGGTTCAGCTACCTCAGTAATTACTGAAGTTCCTTCAACT  418

seq1  TGAATTTGCTTAGTCTGTAAATACTTCTACAGTGTGGCTCTGGCTTGGGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTGCTTAGTCTGTAAATACTTCTACAGTGTGGCTCTGGCTTGGGT  468

seq1  TCTGATTGATCTCATCAATAATCAGAAATTTCTTAAGAAATAATAAAGCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTGATCTCATCAATAATCAGAAATTTCTTAAGAAATAATAAAGCA  518

seq1  TTATTAATAAATTGATAGATATTAAGATAATTTAAAAGACTACAATGACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAATAAATTGATAGATATTAAGATAATTTAAAAGACTACAATGACA  568

seq1  TCATGCCAATAAGACTTAATCATGTGTTTGTCATATGTTAGTTTTTTTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCCAATAAGACTTAATCATGTGTTTGTCATATGTTAGTTTTTTTAT  618

seq1  GCATTTTTCATGATGTATTTTTTACATTGGTTATTTTACCTTAAGTAGGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTTCATGATGTATTTTTTACATTGGTTATTTTACCTTAAGTAGGT  668

seq1  ACTTTATGATTCTTTATGAATTATATAGAGTTAGCACACATGATATATAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATGATTCTTTATGAATTATATAGAGTTAGCACACATGATATATAT  718

seq1  ATATATACCTTCATTCAAGAATTAAGCATAGATTCAGAGAAATGCCATGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATACCTTCATTCAAGAATTAAGCATAGATTCAGAGAAATGCCATGG  768

seq1  TTTATCAAAAGCTTTTTAGACAACAAGTGCCTGAACCTAGAATAAAATCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCAAAAGCTTTTTAGACAACAAGTGCCTGAACCTAGAATAAAATCC  818

seq1  TTATCTTTAGAGTTCTGTTTATGATTTGTATATCCTGCCACTATTTCAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTTAGAGTTCTGTTTATGATTTGTATATCCTGCCACTATTTCAGG  868

seq1  AGACCAATTTTCTCCTCCACAGGTTGAAAGATTTGAGGTTATTTGGCTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAATTTTCTCCTCCACAGGTTGAAAGATTTGAGGTTATTTGGCTCA  918

seq1  CATTTTGCCAAACACCAGTCTGGATTTAGAGAGGGGTTTCTAAGGGAAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGCCAAACACCAGTCTGGATTTAGAGAGGGGTTTCTAAGGGAAGG  968

seq1  CATATCTGGAAGTGTTGAAACAAATGACTCAAAAACTATCTAGTGAGCTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTGGAAGTGTTGAAACAAATGACTCAAAAACTATCTAGTGAGCTC  1018

seq1  ATTTCTTATAAGCCAAAACCCAGTTTTTTATTTACATATCAATTCAGTCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTATAAGCCAAAACCCAGTTTTTTATTTACATATCAATTCAGTCA  1068

seq1  TTACTCAAAGTTCTCTTTTGATTATCCCATGAATCTGCATCCTATAACCC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCAAAGTTCTCTTTTGATTATCCCATGAATCTGCATCCTATAACCC  1118

seq1  TAGTCCCTTCATTCTTAGAGACAGCAAATACACATGTTTTTTTAACCATT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCCTTCATTCTTAGAGACAGCAAATACACATGTTTTTTTAACCATT  1168

seq1  GCAAAAGAATTC  1211
      ||||||||||||
seq2  GCAAAAGAATTC  1180

seq1: chr18_51487371_51488103
seq2: B6Ng01-168A08.g_529_1246

seq1  TGAGTTAGAGATTAGGGCACCTGTCCACTTCTTTCAGCTCTAGAACCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTAGAGATTAGGGCACCTGTCCACTTCTTTCAGCTCTAGAACCTCA  50

seq1  GTTGTTTTGTACCCATGCAGGTCTCGAGTCTCTGTGAGTTCAACTGTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTTGTACCCATGCAGGTCTCGAGTCTCTGTGAGTTCAACTGTGCA  100

seq1  CTGATCATGGTTTTGTAGTATCCTCCATTCCCTCTGGCTCTTACATTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCATGGTTTTGTAGTATCCTCCATTCCCTCTGGCTCTTACATTCTT  150

seq1  TTTGCCTCCTCTTCTGTATAGTTCCCTGAACAATAAGAAGAACTTGATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTCCTCTTCTGTATAGTTCCCTGAACAATAAGAAGAACTTGATGG  200

seq1  AGACATCCTATTTAGGACTGAGTGATCCAAGATCTCTCATTCTCTTAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATCCTATTTAGGACTGAGTGATCCAAGATCTCTCATTCTCTTAATA  250

seq1  TTGTCTGACTATGGGTCTCTGTATTTCTTTCCATATTCTGCAGGAGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGACTATGGGTCTCTGTATTTCTTTCCATATTCTGCAGGAGGAAA  300

seq1  GTTCTCTGATCATGGCTAAGTAATGCCCTGATCTATGAGTATAGCAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTGATCATGGCTAAGTAATGCCCTGATCTATGAGTATAGCAAATT  350

seq1  GTCATTAGTAGTCATTTTATTGTTATATTCCTGTAGTAGAACAGGAGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTAGTAGTCATTTTATTGTTATATTCCTGTAGTAGAACAGGAGTGT  400

seq1  TTGGTTCTAGTAGCAGTGTTGGGTATGGGTTGCATCATGTGTAGTGAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCTAGTAGCAGTGTTGGGTATGGGTTGCATCATGTGTAGTGAGCC  450

seq1  TTAAGTCAAATCAGATATTGGTTGGTTACTCCTACAAGCTTTGGCAAGAT  500
      ||||||||||||||||||||||||||||||||||| ||||||||| ||||
seq2  TTAAGTCAAATCAGATATTGGTTGGTTACTCCTAC-AGCTTTGGC-AGAT  498

seq1  CTTTAAACTTGTTTTCCTAAAACAGTCTAGTTGGATTGGTAGCTGGATAT  550
      ||||||||||| ||||||||||||||||||||||||||||||||||| ||
seq2  CTTTAAACTTG-TTTCCTAAAACAGTCTAGTTGGATTGGTAGCTGGAAAT  547

seq1  AACTTCATAATTTTGCATAGTTTGGAAGTAGAAGTTTATAGGAATATTTA  600
      ||||||||||||||||||||||| |||||||||| |||||||||||||||
seq2  AACTTCATAATTTTGCATAGTTT-GAAGTAGAAGGTTATAGGAATATTTA  596

seq1  CCAAGTGAGAACATTTACATGTAATACCTTGTATGTGACTATTAAATTAA  650
       |||||||||   ||||||||| |||||||||||||||| | ||||||||
seq2  ACAAGTGAGA--CTTTACATGT-ATACCTTGTATGTGACCA-TAAATTAA  642

seq1  GATGAAGTAAACAATGACATGCCTTGTAAACATAT-GACCACAGAACTCA  699
      |||||||||||| ||||  |||  || ||| |||| ||||||||||||||
seq2  GATGAAGTAAAC-ATGAATTGC--TGGAAA-ATATGGACCACAGAACTCA  688

seq1  TTGAACCTAGAGAAGTAGAACTGGTGCCTACATG  733
      ||| || ||| |||   |||||||||||| ||||
seq2  TTGGACTTAG-GAA--TGAACTGGTGCCT-CATG  718