BAC Information

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BAC

Clone NameB6Ng01-168E02
Chromosome18 (Build37)9 (Build37)
Map Location 12,807,593 - 12,808,75242,305,740 - 42,306,002
singlet/doubletsingletsinglet
Overlap gene2810439F02Rik
Upstream geneRbbp8, LOC621998, Cables1, 6030446N20Rik, Riok3, 3110002H16Rik, Npc1, Ankrd29, Lama3
Downstream geneCabyr, LOC665356, Osbpl1a, LOC435556, Impact, Hrh4, EG383354, LOC665379
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168E02.bB6Ng01-168E02.g
ACCDH959540DH959541
length1,149148
definitionDH959540|Mus musculus domesticus DNA, BAC clone: B6Ng01-168E02, 5' end.DH959541|Mus musculus domesticus DNA, BAC clone: B6Ng01-168E02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(12,807,593 - 12,808,752)(42,305,740 - 42,306,002)
sequence
gaattcttcattcaatcccaagcatgacagataaagtgtgcattggtcat
taaacatttaccagtgataaatgcacacaaataagtaaggatgtgataga
gaaagaagagagaggtgacattattaattctgcttttctttcccatttta
aattataaaatggcaaaaaccattaaaagtaaagaaaactttgtggtaaa
taatgtttgtgtgtatatgtttgtaatgcatgtacagatgctaaactgct
cagcacaggtataaaacgtgctatagagtcacgcatggtgtggctggatt
tgagagcgcgttactttggacctgggattattgctatgaggattgtttgc
tgttattcaggggttggaaaagactcggcctacaggccaagtctcgcttg
ttatctatctttgcaaatatagttttactggacgcagacccactcctgtg
gtcatggctggcctgtagctgcttgtatatcacaatttcatcaaaaggaa
ggtgtggaagaggccataatgctagcctttgtcaagtctgttgaccccag
gtccaaaccgtagacattcttgggaaaattcaaagtaggagatgttgggc
tggtagggtccaggctttctccctgcccaacactgtgtcagatcattgaa
cggcaggacactgcgaggatgggcgtcttgggtgttcaggatagctcatc
cttacttctagagtctgtagagaaatccgtagatacagagatgaaagcaa
agtgatgtgaggttagtgaaggaggtccatctgctgactcttctgtcttc
ttcccctcagtggtgtggctgtccgtaggctccgcttgatttcctgacgt
aatttatgaaagtgtcctgattaaatactccttcagattcatttagctga
agtggaattcttttaaacatatatttgcccatagaatagtgggagggcct
agaggaaattaataatcctcataagtacctacctcccaaaccttagttgt
ggcatgagtgcattcagcatacgtacgtgtgtacacacactcagtgtgca
gattcacagttaagatgccccctccagaaagttgtatcgttgagcccctc
tactatgtaatgctcacttcagttagaacacattcttcctcctaactca
actacgtagctgatggtagattcaaactcatccttctttctcagtttcca
aagagctgaatttaaaggcaagcatcattgggcctaaataatgtggggtg
tgtgtgtgtgtgtgtgtgtgtgtcaatatgtgtgtgtgtctgtctgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_12807593_12808752
seq2: B6Ng01-168E02.b_47_1195

seq1  GAATTCTTCATTCAATCCCAAGCATGACAGATAAAGTGTGCATTGGTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATTCAATCCCAAGCATGACAGATAAAGTGTGCATTGGTCAT  50

seq1  TAAACATTTACCAGTGATAAATGCACACAAATAAGTAAGGATGTGATAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATTTACCAGTGATAAATGCACACAAATAAGTAAGGATGTGATAGA  100

seq1  GAAAGAAGAGAGAGGTGACATTATTAATTCTGCTTTTCTTTCCCATTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAGAGAGAGGTGACATTATTAATTCTGCTTTTCTTTCCCATTTTA  150

seq1  AATTATAAAATGGCAAAAACCATTAAAAGTAAAGAAAACTTTGTGGTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAAAATGGCAAAAACCATTAAAAGTAAAGAAAACTTTGTGGTAAA  200

seq1  TAATGTTTGTGTGTATATGTTTGTAATGCATGTACAGATGCTAAACTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTTGTGTGTATATGTTTGTAATGCATGTACAGATGCTAAACTGCT  250

seq1  CAGCACAGGTATAAAACGTGCTATAGAGTCACGCATGGTGTGGCTGGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAGGTATAAAACGTGCTATAGAGTCACGCATGGTGTGGCTGGATT  300

seq1  TGAGAGCGCGTTACTTTGGACCTGGGATTATTGCTATGAGGATTGTTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCGCGTTACTTTGGACCTGGGATTATTGCTATGAGGATTGTTTGC  350

seq1  TGTTATTCAGGGGTTGGAAAAGACTCGGCCTACAGGCCAAGTCTCGCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTCAGGGGTTGGAAAAGACTCGGCCTACAGGCCAAGTCTCGCTTG  400

seq1  TTATCTATCTTTGCAAATATAGTTTTACTGGACGCAGACCCACTCCTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTATCTTTGCAAATATAGTTTTACTGGACGCAGACCCACTCCTGTG  450

seq1  GTCATGGCTGGCCTGTAGCTGCTTGTATATCACAATTTCATCAAAAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGGCTGGCCTGTAGCTGCTTGTATATCACAATTTCATCAAAAGGAA  500

seq1  GGTGTGGAAGAGGCCATAATGCTAGCCTTTGTCAAGTCTGTTGACCCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGAAGAGGCCATAATGCTAGCCTTTGTCAAGTCTGTTGACCCCAG  550

seq1  GTCCAAACCGTAGACATTCTTGGGAAAATTCAAAGTAGGAGATGTTGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAACCGTAGACATTCTTGGGAAAATTCAAAGTAGGAGATGTTGGGC  600

seq1  TGGTAGGGTCCAGGCTTTCTCCCTGCCCAACACTGTGTCAGATCATTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGGGTCCAGGCTTTCTCCCTGCCCAACACTGTGTCAGATCATTGAA  650

seq1  CGGCAGGACACTGCGAGGATGGGCGTCTTGGGTGTTCAGGATAGCTCATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAGGACACTGCGAGGATGGGCGTCTTGGGTGTTCAGGATAGCTCATC  700

seq1  CTTACTTCTAGAGTCTGTAGAGAAATCCGTAGATACAGAGATGAAAGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTCTAGAGTCTGTAGAGAAATCCGTAGATACAGAGATGAAAGCAA  750

seq1  AGTGATGTGAGGTTAGTGAAGGAGGTCCATCTGCTGACTCTTCTGTCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGTGAGGTTAGTGAAGGAGGTCCATCTGCTGACTCTTCTGTCTTC  800

seq1  TTCCCCTCAGTGGTGTGGCTGTCCGTAGGCTCCGCTTGATTTCCTGACGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTCAGTGGTGTGGCTGTCCGTAGGCTCCGCTTGATTTCCTGACGT  850

seq1  AATTTATGAAAGTGTCCTGATTAAATACTCCTTCAGGATTCATTTAGCTG  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AATTTATGAAAGTGTCCTGATTAAATACTCCTTCA-GATTCATTTAGCTG  899

seq1  AAGTGGAATTCTTTTAAAACATATATTTGCCCATAGAATAGTGGGAGGGC  950
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAGTGGAATTCTTTT-AAACATATATTTGCCCATAGAATAGTGGGAGGGC  948

seq1  CTAGAGGAAATTAATAATCCCTCATAAGTACCTACCTCCCAAAACCTTAG  1000
      |||||||||||||||||| ||||||||||||||||||||| |||||||| 
seq2  CTAGAGGAAATTAATAAT-CCTCATAAGTACCTACCTCCC-AAACCTTA-  995

seq1  GTTGTGGCATGAGTGCATTCAGGCATACGTACGTGTGTACACACACTCAA  1050
      ||||||||||||||||||||| |||||||||||||||||||||||||| |
seq2  GTTGTGGCATGAGTGCATTCA-GCATACGTACGTGTGTACACACACTC-A  1043

seq1  GTGTGCAGATTCACAGTTAAGGATG-CACCTCCAGAAAGTATGTATCGTC  1099
      |||||||||||||||||||| |||| | |||||||||||| |||||||  
seq2  GTGTGCAGATTCACAGTTAA-GATGCCCCCTCCAGAAAGT-TGTATCG--  1089

seq1  TTGAGCCCCTTCTACTATGTTAATGGCTACTTCAGTTAGACAACATTCTT  1149
      ||||||||| ||||||||| |||||   ||||||||||||  ||||||||
seq2  TTGAGCCCC-TCTACTATG-TAATGCTCACTTCAGTTAGAACACATTCTT  1137

seq1  CCT-CTAACTCA  1160
      ||| ||||||||
seq2  CCTCCTAACTCA  1149

seq1: chr9_42305740_42306002
seq2: B6Ng01-168E02.g_170_221 (reverse)

seq1  GACAGACAGACACACACACACACACACACTCCAGGTTCCACTTTAGCACA  50
      |||||||||||||||||||| |                    ||      
seq2  GACAGACAGACACACACACATA--------------------TT------  24

seq1  TCAACAGACAGACAAACAGACACACACACACACACACACACACACACACA  100
                        |||||||||||||||||||||||||||     
seq2  ------------------GACACACACACACACACACACACACACC----  52

seq1  CTCTCCAGGTTCCCCTTTAGTACATCAACAGACAGACAGACACACACTCC  150
                                                        
seq2  --------------------------------------------------  52

seq1  AGGTTCCCCTTTAGTACATCAACAGACAGACAGACACACACTCCAGGTTC  200
                                                        
seq2  --------------------------------------------------  52

seq1  CCCTTTAATACATCAACATCAACAGACGACAGACAGACATACAGACACAC  250
                                                        
seq2  --------------------------------------------------  52

seq1  ACACACACACACC  263
                   
seq2  -------------  52