BAC Information

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BAC

Clone NameB6Ng01-168J09
Chromosome18 (Build37)
Map Location 78,326,015 - 78,466,196
singlet/doubletdoublet
Overlap geneSlc14a2
Upstream genePias2, EG639653, St8sia5, Loxhd1, Rnf165, 8030462N17Rik, 4930465K10Rik, Ccdc5, Atp5a1, Pstpip2, 5430411K18Rik, Cd33l3, Slc14a1
Downstream geneEG620155, Setbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168J09.bB6Ng01-168J09.g
ACCDH959785DH959786
length1,158981
definitionDH959785|Mus musculus domesticus DNA, BAC clone: B6Ng01-168J09, 5' end.DH959786|Mus musculus domesticus DNA, BAC clone: B6Ng01-168J09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,465,029 - 78,466,196)(78,326,015 - 78,326,997)
sequence
gaattctttgtttagttctgagccccatttttaatggggttatttgattt
tctggagtccaccttcttgagttctttatatatattagatattagtcccc
tatctgatttaggataggtaaagatcctttcccaatctgttggtggcctt
tttgtcttattgatagtgtcttttgccttgcagaagctttgcaattttat
gaggtcccatttgtcaattctcgatcttacagcacaagccattgctgttc
tattcaggatttttcccctgtacccatatcttcgaggcttttccctactt
tctcctctataagtttcagtgtctctgggtgacatttataaggaccagag
gctacagtaccagggagagacaaaaggaacatttgtctttatgctactgc
cacaaccaagttgagagatgatggtagccaaacccaaagtggcacagtag
accaggagctcccaaattaccccatgcaaagagttctcttcttcattata
caacacttactaatgtaaatttctcccatcatagcaacacagtcttagtg
gtatagctgatgggcggagcaagcactaaacgaatcctcagcttctgaac
tccaaagtgtctgtgcatttgaaagagttgtgcacagaaatagtgatttt
ttttagacccagtaatcacattgttcccccaaagtatgcactgagacttg
ccaccctccgtcttcccattccctcaaccagccaaaccttgtttcttcag
cctctctggatggatccagggagcttatgtactccaataccagtgggtgt
aagtgacaaccaagcacagatcatcagccagaatcaatgcctaagtggaa
gtcaagagatccaggatcagtctgaaattgtaagcaaaaaagcatgccag
agtatgcgtgtctgagatcaactttcattagcttctcatgaactaagaaa
aatgggagtgttaatacacaccagtttaaagagctttcccacccagtgac
catatatgtttcacaagactttccatgtttatctcaagtagaaagcacag
gtgaagaaggcagaacatttaagctatagatgttcaattcacccagcagg
agggagccacacagtctgcgaatgaaacatttctattccacaccatgacc
ttccttcc
gaattctcagcccgtctcttcgaagtttcccttggtaactccacacccac
cctctgtccactctgcttcctcccgaaacatcactttgtttagctagctc
actggacagagtcccagggtaggcatggagactcactagactctgacaaa
atgggcagttcatctgctggcatttcaattgcctcacttgttagaggatg
gcctggctacatcagtgattctcagacgtggctgtgcatcgcaatgaccc
agagagctttaaaagcacgctgtgccccatgtggttggtttgaggcagga
ggattgcactgtgaggattgcagtcggtgattgcactgtgcaggccgcag
tgaggaagtgagcctggatctctctaaccctgggctctcagttggcgcac
tggggaagtaggttataggaaggtaggtggggattcgcagttagaggttc
aaattccagtccgcaatcaaaccacaggggaaactagttagtgtttgtga
actttaattttattataaaattaatggagcttaaggatgtccaccttgcc
agatgcgaagatttcgagcaaccaaggcacacgataggcgtttgagcaaa
ggtggcttgattggttcctccttaaaatagtccctgactgtgactttctc
atttctgcccgtagcgccatcaaacatcaattctgaggcatgtgatgaca
cgcaccttgtgatcctaacccttgggaggccgaatcagagggatcacaaa
tttgaggactgcatgggcttgctggggaggacaaaaatggtagctcattg
ccaatcctcccattgaagcacggatggaggcttttttttcattcattcca
ggtaatgtttttcacaatcttgctatcaaagtgtctcccaccgccgaatc
gtttttgcactctcgggggatttgtggacatggcctctcattccagcagg
atttcccaatcagaacctgcgtttcactccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_78465029_78466196
seq2: B6Ng01-168J09.b_45_1202 (reverse)

seq1  GGAAGGAAAGTCATGTTGTGGAATAAGAAATGTGTTTCATCTGCAGACTG  50
      |||||||| |||||| |||||||| |||||  ||||||||  ||||||||
seq2  GGAAGGAAGGTCATGGTGTGGAAT-AGAAA--TGTTTCATTCGCAGACTG  47

seq1  TGTGGCTCCCTTCCTGCCTGGGGTGAATTG-ACATCTATAGCTTTAAATG  99
      |||||||||| ||||||   |||||||||| ||||||||||| |||||||
seq2  TGTGGCTCCC-TCCTGC--TGGGTGAATTGAACATCTATAGC-TTAAATG  93

seq1  -TCTGCCTTTCTTCACCTTGTGCTTTCTACTTGGGATTAAACATGGAAAG  148
       |||||| ||||||||| ||||||||||||||| || |||||||||||||
seq2  TTCTGCC-TTCTTCACC-TGTGCTTTCTACTTGAGA-TAAACATGGAAAG  140

seq1  TCTTTGTTGAAACATATATGGTCACTGGGTGGGAAAGCTCTTTAAACTGG  198
      ||||   |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTT--GTGAAACATATATGGTCACTGGGTGGGAAAGCTCTTTAAACTGG  188

seq1  TGTGTATTAACACTCCCCTTTTTCTTAGTTCATGAGAAGCTAATGAAAGT  248
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGTGTATTAACACTCCCATTTTTCTTAGTTCATGAGAAGCTAATGAAAGT  238

seq1  TGATCTCAGACACGCATACTCTGGCATGCTTTTTTGCTTACAATTTCAGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCAGACACGCATACTCTGGCATGCTTTTTTGCTTACAATTTCAGA  288

seq1  CTGATCCTGGATCTCTTGACTTCCACTTAGGCATTGATTCTGGCTGATGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCCTGGATCTCTTGACTTCCACTTAGGCATTGATTCTGGCTGATGA  338

seq1  TCTGTGCTTGGTTGTCACTTACACCCACTGGTATTGGAGTACATAAGCTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCTTGGTTGTCACTTACACCCACTGGTATTGGAGTACATAAGCTC  388

seq1  CCTGGATCCATCCAGAGAGGCTGAAGAAACAAGGTTTGGCTGGTTGAGGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGATCCATCCAGAGAGGCTGAAGAAACAAGGTTTGGCTGGTTGAGGG  438

seq1  AATGGGAAGACGGAGGGTGGCAAGTCTCAGTGCATACTTTGGGGGAACAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAAGACGGAGGGTGGCAAGTCTCAGTGCATACTTTGGGGGAACAA  488

seq1  TGTGATTACTGGGTCTAAAAAAAATCACTATTTCTGTGCACAACTCTTTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTACTGGGTCTAAAAAAAATCACTATTTCTGTGCACAACTCTTTC  538

seq1  AAATGCACAGACACTTTGGAGTTCAGAAGCTGAGGATTCGTTTAGTGCTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCACAGACACTTTGGAGTTCAGAAGCTGAGGATTCGTTTAGTGCTT  588

seq1  GCTCCGCCCATCAGCTATACCACTAAGACTGTGTTGCTATGATGGGAGAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCGCCCATCAGCTATACCACTAAGACTGTGTTGCTATGATGGGAGAA  638

seq1  ATTTACATTAGTAAGTGTTGTATAATGAAGAAGAGAACTCTTTGCATGGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACATTAGTAAGTGTTGTATAATGAAGAAGAGAACTCTTTGCATGGG  688

seq1  GTAATTTGGGAGCTCCTGGTCTACTGTGCCACTTTGGGTTTGGCTACCAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTGGGAGCTCCTGGTCTACTGTGCCACTTTGGGTTTGGCTACCAT  738

seq1  CATCTCTCAACTTGGTTGTGGCAGTAGCATAAAGACAAATGTTCCTTTTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTCAACTTGGTTGTGGCAGTAGCATAAAGACAAATGTTCCTTTTG  788

seq1  TCTCTCCCTGGTACTGTAGCCTCTGGTCCTTATAAATGTCACCCAGAGAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCTGGTACTGTAGCCTCTGGTCCTTATAAATGTCACCCAGAGAC  838

seq1  ACTGAAACTTATAGAGGAGAAAGTAGGGAAAAGCCTCGAAGATATGGGTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAACTTATAGAGGAGAAAGTAGGGAAAAGCCTCGAAGATATGGGTA  888

seq1  CAGGGGAAAAATCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATCGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGAAAAATCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATCGA  938

seq1  GAATTGACAAATGGGACCTCATAAAATTGCAAAGCTTCTGCAAGGCAAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGACAAATGGGACCTCATAAAATTGCAAAGCTTCTGCAAGGCAAAA  988

seq1  GACACTATCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATCTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTATCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATCTT  1038

seq1  TACCTATCCTAAATCAGATAGGGGACTAATATCTAATATATATAAAGAAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTATCCTAAATCAGATAGGGGACTAATATCTAATATATATAAAGAAC  1088

seq1  TCAAGAAGGTGGACTCCAGAAAATCAAATAACCCCATTAAAAATGGGGCT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAGGTGGACTCCAGAAAATCAAATAACCCCATTAAAAATGGGGCT  1138

seq1  CAGAACTAAACAAAGAATTC  1168
      ||||||||||||||||||||
seq2  CAGAACTAAACAAAGAATTC  1158

seq1: chr18_78326015_78326997
seq2: B6Ng01-168J09.g_67_1046

seq1  GAATTCTCAGCCCGTCTCTTCGAAGTTTCCCTTGGTAACTCCACACCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCCCGTCTCTTCGAAGTTTCCCTTGGTAACTCCACACCCAC  50

seq1  CCTCTGTCCACTCTGCTTCCTCCCGAAACATCACTTTGTTTAGCTAGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTCCACTCTGCTTCCTCCCGAAACATCACTTTGTTTAGCTAGCTC  100

seq1  ACTGGACAGAGTCCCAGGGTAGGCATGGAGACTCACTAGACTCTGACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGACAGAGTCCCAGGGTAGGCATGGAGACTCACTAGACTCTGACAAA  150

seq1  ATGGGCAGTTCATCTGCTGGCATTTCAATTGCCTCACTTGTTAGAGGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCAGTTCATCTGCTGGCATTTCAATTGCCTCACTTGTTAGAGGATG  200

seq1  GCCTGGCTACATCAGTGATTCTCAGACGTGGCTGTGCATCGCAATGACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCTACATCAGTGATTCTCAGACGTGGCTGTGCATCGCAATGACCC  250

seq1  AGAGAGCTTTAAAAGCACGCTGTGCCCCATGTGGTTGGTTTGAGGCAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCTTTAAAAGCACGCTGTGCCCCATGTGGTTGGTTTGAGGCAGGA  300

seq1  GGATTGCACTGTGAGGATTGCAGTCGGTGATTGCACTGTGCAGGCCGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGCACTGTGAGGATTGCAGTCGGTGATTGCACTGTGCAGGCCGCAG  350

seq1  TGAGGAAGTGAGCCTGGATCTCTCTAACCCTGGGCTCTCAGTTGGCGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAGTGAGCCTGGATCTCTCTAACCCTGGGCTCTCAGTTGGCGCAC  400

seq1  TGGGGAAGTAGGTTATAGGAAGGTAGGTGGGGATTCGCAGTTAGAGGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAGTAGGTTATAGGAAGGTAGGTGGGGATTCGCAGTTAGAGGTTC  450

seq1  AAATTCCAGTCCGCAATCAAACCACAGGGGAAACTAGTTAGTGTTTGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCAGTCCGCAATCAAACCACAGGGGAAACTAGTTAGTGTTTGTGA  500

seq1  ACTTTAATTTTATTATAAAATTAATGGAGCTTAAGGATGTCCACCTTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAATTTTATTATAAAATTAATGGAGCTTAAGGATGTCCACCTTGCC  550

seq1  AGATGCGAAGATTTCGAGCAACCAAGGCACACGATAGGCGTTTGAGCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCGAAGATTTCGAGCAACCAAGGCACACGATAGGCGTTTGAGCAAA  600

seq1  GGTGGCTTGATTGGTTCCTCCTTAAAATAGTCCCTGACTGTGAC-TTCTC  649
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGTGGCTTGATTGGTTCCTCCTTAAAATAGTCCCTGACTGTGACTTTCTC  650

seq1  ATTTCTGCCCGTAGCGCCATCAAACATCAATTCTGAGGCATGTGATGACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGCCCGTAGCGCCATCAAACATCAATTCTGAGGCATGTGATGACA  700

seq1  CGCACCTTGTGATCCTAACCCTTGGGAGGCCGAAGCAGAGGGATCACAAA  749
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CGCACCTTGTGATCCTAACCCTTGGGAGGCCGAATCAGAGGGATCACAAA  750

seq1  TTTGAGGACTGCATGGGCTTGCTGGGGAGGAC-AAAATGGTAGCTCAGTA  798
      |||||||||||||||||||||||||||||||| |||||||||||||| | 
seq2  TTTGAGGACTGCATGGGCTTGCTGGGGAGGACAAAAATGGTAGCTCA-TT  799

seq1  GCCAATCCTCCCCATGAAGCACGGATGGAGGC-TTCTTTTCATTCATTCC  847
      ||||||||||||  |||||||||||||||||| || ||||||||||||||
seq2  GCCAATCCTCCCATTGAAGCACGGATGGAGGCTTTTTTTTCATTCATTCC  849

seq1  AGGTAAGGTTCTTCACAATCCTTGCTATGCAAAGTGTCGTCCACCGCCG-  896
      |||||| ||| |||||||| |||||||| |||||||||  ||||||||| 
seq2  AGGTAATGTTTTTCACAAT-CTTGCTAT-CAAAGTGTCTCCCACCGCCGA  897

seq1  AGCGGCTCTGCAGCTCCCGGGGACTTGGTGGACATGGCCTCCTCAGTTCC  946
      | ||  | |||| ||| |||||  || ||||||||||||| |||| ||||
seq2  ATCGTTTTTGCA-CTCTCGGGGGATTTGTGGACATGGCCT-CTCA-TTCC  944

seq1  AGCAGGACTTCCAAATCAGAACCTGCGTTTCAGCTCC  983
      ||||||| |||| ||||||||||||||||||| ||||
seq2  AGCAGGATTTCCCAATCAGAACCTGCGTTTCA-CTCC  980