BAC Information

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BAC

Clone NameB6Ng01-168P04
Chromosome18 (Build37)
Map Location 57,390,745 - 57,562,942
singlet/doubletdoublet
Overlap geneMegf10, LOC672445, Prrc1
Upstream geneLOC676543, LOC667432, Gramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171, Lmnb1, March3, C330018D20Rik
Downstream gene1700011I03Rik, 4930511M06Rik, 2210409D07Rik, Slc12a2, 9330166H04Rik, Fbn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168P04.bB6Ng01-168P04.g
ACCDH960054DH960055
length9981,170
definitionDH960054|Mus musculus domesticus DNA, BAC clone: B6Ng01-168P04, 5' end.DH960055|Mus musculus domesticus DNA, BAC clone: B6Ng01-168P04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,390,745 - 57,391,740)(57,561,762 - 57,562,942)
sequence
gaattcactgagtagccagctagcgcactcaatacattccaggccaataa
gaaaccttgtcagtgatgatgatgatgatgataataacaacaacaacaac
agcatggcacctgagagacaacacctatagttattctctggcctctacac
tcatgtacacatgcacacatagaaattcagattggtgcagttcatttagg
gttgtcagatgtagcacaaacgcacagaaatgaacgcttctgtcagagta
taattcccaaccaacgtcccaagaaaaggcctttttagttcacaaagtca
ttcaaagcctcttctgcactcttagataaatgaggtaagccacgttggtg
ggattgtctaatacccactgatttgatgagattgtctagattttatttat
ttggcctatttctttaagttgggatggagattaatatggaatttttctgt
gtcttatatttatgacacccatgtacaatcctacactggtagacacccaa
taaccaactaagaagtgtctaaacctgggggcgttatttttcacttttcc
ttccttgtctgtttcatacatgtatttaatgagtcgaggtcactccgccc
ccatcggttcctctcatcctcatctctttaacactgaaacccgtctcctc
ctcctcctccaccacctcctcctccttcttctttttgtttttttttggtt
ttgttttgttttgttttttgtttttcgagacagggttttctctgtatagc
cctggctgtcctggaactcactttgtagaccaggctggccttcgaactca
gaaatcctccctgcctctgcctcccgggtgctgggattaaaagtgtgcac
cactacacctggctgaaacccggtcttcttaacagtcctccacctacacg
tcttcttttccgtgtgagccactttgtcttaactagaatgcctgtagggg
tatgtaggagagcccttgaataatgaggaatttatcatggttgactgc
gaattcagacaggatttaggcagaataatgtaaaagataggcagggtata
ttacagagaagggggggcaccctggaggggtaattgtggcaatggccgag
gggatcagtacaaaggaaagtactctgacatgacaagacttgacaacggc
cagagaaagcactgcacagggtactgtcttaagaggtaagaatggataat
ggccaaagaaaccattgtgccaactcacatgccttggtaggctttttact
atctcttaaagtcctggaacggacagccttcctggggagtgttttcctgt
ctaggtagtagacaggctcatttgaatgaactcttatgtgaggggacata
aaaggctttatcagccagaaagcttcctgctaaatagtaatcctatgttc
tttgtgggtgcagtttaatatgtcctgtctctaccctaggccaaagacat
ggctcagacactattcttttgaccttagtcaagattcctgaaggttcagt
tcctgggtttgcaatatgctgattatgaaggggggtgtcctcccccgagt
ctcttccttctagacaacagtatctggatagttccctggcaactatagct
gaggaattaagtaaggaagtgtcctctcactgctcagtatttttctaagg
acggcatagctccttccatttaaacatctgtagaatgagacagccactcc
aatgcaaacaggtcagatttatttagaagatgcagtggttcatcttggtg
gtcaattttaacacacctgggaagaagaagcctcaactgaagaattgctt
taatcagactggcccgtagacaggtctatgggacatattctttgatggct
aattgacgtaggagagagcagcccactgtgggtgactctgtccccagata
agtcaggcttgggctggataagaacccgagcctgagagtgaacctgtgag
caatgtgcttcaagttcctgcctggcctttcctcacgatagacataaccc
aataagtaaaataagttcttcctcccaagttgttttggtcacgacatttg
tctaggaaaggaaacgactgtggacttagcttatgagcataggaacttct
ttggtggacccattttcaggtctttctaatgggcaattattggagagatc
caagttgcctgcaggcttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_57390745_57391740
seq2: B6Ng01-168P04.b_48_1045

seq1  GAATTCACTGAGTAGCCAGCTAGCGCACTCAATACATTCCAGGCCAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGAGTAGCCAGCTAGCGCACTCAATACATTCCAGGCCAATAA  50

seq1  GAAACCTTGTCAGTGATGATGATGATGATGATAATAACAACAACAACAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTTGTCAGTGATGATGATGATGATGATAATAACAACAACAACAAC  100

seq1  AGCATGGCACCTGAGAGACAACACCTATAGTTATTCTCTGGCCTCTACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGCACCTGAGAGACAACACCTATAGTTATTCTCTGGCCTCTACAC  150

seq1  TCATGTACACATGCACACATAGAAATTCAGATTGGTGCAGTTCATTTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTACACATGCACACATAGAAATTCAGATTGGTGCAGTTCATTTAGG  200

seq1  GTTGTCAGATGTAGCACAAACGCACAGAAATGAACGCTTCTGTCAGAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCAGATGTAGCACAAACGCACAGAAATGAACGCTTCTGTCAGAGTA  250

seq1  TAATTCCCAACCAACGTCCCAAGAAAAGGCCTTTTTAGTTCACAAAGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCCAACCAACGTCCCAAGAAAAGGCCTTTTTAGTTCACAAAGTCA  300

seq1  TTCAAAGCCTCTTCTGCACTCTTAGATAAATGAGGTAAGCCACGTTGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGCCTCTTCTGCACTCTTAGATAAATGAGGTAAGCCACGTTGGTG  350

seq1  GGATTGTCTAATACCCACTGATTTGATGAGATTGTCTAGATTTTATTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGTCTAATACCCACTGATTTGATGAGATTGTCTAGATTTTATTTAT  400

seq1  TTGGCCTATTTCTTTAAGTTGGGATGGAGATTAATATGGAATTTTTCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTATTTCTTTAAGTTGGGATGGAGATTAATATGGAATTTTTCTGT  450

seq1  GTCTTATATTTATGACACCCATGTACAATCCTACACTGGTAGACACCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATATTTATGACACCCATGTACAATCCTACACTGGTAGACACCCAA  500

seq1  TAACCAACTAAGAAGTGTCTAAACCTGGGGGCGTTATTTTTCACTTTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAACTAAGAAGTGTCTAAACCTGGGGGCGTTATTTTTCACTTTTCC  550

seq1  TTCCTTGTCTGTTTCATACATGTATTTAATGAGTCGAGGTCACTCCGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGTCTGTTTCATACATGTATTTAATGAGTCGAGGTCACTCCGCCC  600

seq1  CCATCGGTTCCTCTCATCCTCATCTCTTTAACACTGAAACCCGTCTCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCGGTTCCTCTCATCCTCATCTCTTTAACACTGAAACCCGTCTCCTC  650

seq1  CTCCTCCTCCTCCTCCTCCTCCTCCTTCTTCTTTTTGTTTTTTTTTGGTT  700
      |||||||||| || ||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCTCCACCACCTCCTCCTCCTTCTTCTTTTTGTTTTTTTTTGGTT  700

seq1  TTGTTTTGTTTTGTTTTTTGTTTTTCGAGACAGGG-TTTCTCTGTATAGC  749
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTGTTTTGTTTTGTTTTTTGTTTTTCGAGACAGGGTTTTCTCTGTATAGC  750

seq1  CCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCC-TCGAACTCA  798
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTTCGAACTCA  800

seq1  GAAATCCT-CCTGCCTCTGCCTCCCGGGTGCTGGGATTAAAGGTGTGCAC  847
      |||||||| |||||||||||||||||||||||||||||||| ||||||||
seq2  GAAATCCTCCCTGCCTCTGCCTCCCGGGTGCTGGGATTAAAAGTGTGCAC  850

seq1  CACTACACCTGGCTGAAACCC-GTCTTCTTAACAGTCCTCCACCTTACAC  896
      ||||||||||||||||||||| |||||||||||||||||||||| |||||
seq2  CACTACACCTGGCTGAAACCCGGTCTTCTTAACAGTCCTCCACC-TACAC  899

seq1  GTCTTC-TTTCCGTGTGAGCCACTTTG-CTTAACTAGAATTGCCTGTAGG  944
      |||||| |||||||||||||||||||| ||||||||||| ||||||||||
seq2  GTCTTCTTTTCCGTGTGAGCCACTTTGTCTTAACTAGAA-TGCCTGTAGG  948

seq1  GGTATGTAGGAGGAGCCATTGAAGAATGAGGAATTTATCAATGGCTGACT  994
      ||||||||||| ||||| ||||| ||||||||||||||| |||| |||||
seq2  GGTATGTAGGA-GAGCCCTTGAATAATGAGGAATTTATC-ATGGTTGACT  996

seq1  GC  996
      ||
seq2  GC  998

seq1: chr18_57561762_57562942
seq2: B6Ng01-168P04.g_70_1239 (reverse)

seq1  GCAAGCCTGCAGGCAACATTGGATC-CTCTCATAGACTGCCCCTGTAGGA  49
      ||||||||||||||||| ||||||| |||  ||| | ||||| | || ||
seq2  GCAAGCCTGCAGGCAAC-TTGGATCTCTCCAATA-ATTGCCCAT-TA-GA  46

seq1  AGGACTGGGAAATGGGTCCCACAAGAGATGTCTCCTATTGCTCATAAGCT  99
      | |||  | |||||||| |||| | ||| || ||||| ||||||||||||
seq2  AAGACCTGAAAATGGGT-CCACCAAAGAAGT-TCCTA-TGCTCATAAGCT  93

seq1  TATGTCACAGTCTGTTTCCTATCACTATGACAAATGTCGTTGACCCAAAA  149
       |   ||||||| ||||||| || ||| ||||||||||| ||| ||||||
seq2  AAGTCCACAGTC-GTTTCCTTTC-CTA-GACAAATGTCG-TGA-CCAAAA  138

seq1  CAACTTGGGGAGGAAAGGACTTATTTTACTTA-TGGGTTATTGTCTATCG  198
      |||||| |||||| ||| |||||||||||||| ||||||| |||||||||
seq2  CAACTT-GGGAGG-AAGAACTTATTTTACTTATTGGGTTA-TGTCTATCG  185

seq1  TTGAGGAAGGCCAAGGCAGGAACTTGAAGCACATTGCTCACAGGTTCACT  248
       ||||||| | | |||||||||||||||||||||||||||||||||||||
seq2  -TGAGGAAAGGCCAGGCAGGAACTTGAAGCACATTGCTCACAGGTTCACT  234

seq1  CTCAGGCTCGTGTTCTTATCCAGCCCAAGCCTGAC-TATCTGGGGACAGA  297
      |||||||||| |||||||||||||||||||||||| ||||||||||||||
seq2  CTCAGGCTCGGGTTCTTATCCAGCCCAAGCCTGACTTATCTGGGGACAGA  284

seq1  GTCACCCACAGTGGGCTGCTCTCTCCTACGTCAATTAGCCATC-AAGAAT  346
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTCACCCACAGTGGGCTGCTCTCTCCTACGTCAATTAGCCATCAAAGAAT  334

seq1  ATGTCCCATAGACCTGTCTACGGGCCAGTCTGATTGAAGCAATTCTTCAG  396
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATGTCCCATAGACCTGTCTACGGGCCAGTCTGATTAAAGCAATTCTTCAG  384

seq1  TTGAGGCTTCTTCTTCCCAGGTGTGTT-AAATTGACCACCAAGATGAACC  445
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTGAGGCTTCTTCTTCCCAGGTGTGTTAAAATTGACCACCAAGATGAACC  434

seq1  ACTGCATCTTCTAAATAAATCTGACCTGTTTGCATTGGAGTGGCTGTCTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATCTTCTAAATAAATCTGACCTGTTTGCATTGGAGTGGCTGTCTC  484

seq1  ATTCTACAGATGTTTAAATGGAAGGAGCTATGCCGTCCTTAGAAAAATAC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTACAGATGTTTAAATGGAAGGAGCTATGCCGTCCTTAGAAAAATAC  534

seq1  TGAGCAGTGAGAGGACACTTCCTTACTTAATTCCTCAGCTATAGTTGCCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGTGAGAGGACACTTCCTTACTTAATTCCTCAGCTATAGTTGCCA  584

seq1  GGGAACTATCCAGATACTGTTGTCTAGAAGGAAGAGACTCGGGGGAGGAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTATCCAGATACTGTTGTCTAGAAGGAAGAGACTCGGGGGAGGAC  634

seq1  ACCCCCCTTCATAATCAGCATATTGCAAACCCAGGAACTGAACCTTCAGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCCTTCATAATCAGCATATTGCAAACCCAGGAACTGAACCTTCAGG  684

seq1  AATCTTGACTAAGGTCAAAAGAATAGTGTCTGAGCCATGTCTTTGGCCTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGACTAAGGTCAAAAGAATAGTGTCTGAGCCATGTCTTTGGCCTA  734

seq1  GGGTAGAGACAGGACATATTAAACTGCACCCACAAAGAACATAGGATTAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGAGACAGGACATATTAAACTGCACCCACAAAGAACATAGGATTAC  784

seq1  TATTTAGCAGGAAGCTTTCTGGCTGATAAAGCCTTTTATGTCCCCTCACA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGCAGGAAGCTTTCTGGCTGATAAAGCCTTTTATGTCCCCTCACA  834

seq1  TAAGAGTTCATTCAAATGAGCCTGTCTACTACCTAGACAGGAAAACACTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTTCATTCAAATGAGCCTGTCTACTACCTAGACAGGAAAACACTC  884

seq1  CCCAGGAAGGCTGTCCGTTCCAGGACTTTAAGAGATAGTAAAAAGCCTAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAAGGCTGTCCGTTCCAGGACTTTAAGAGATAGTAAAAAGCCTAC  934

seq1  CAAGGCATGTGAGTTGGCACAATGGTTTCTTTGGCCATTATCCATTCTTA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCATGTGAGTTGGCACAATGGTTTCTTTGGCCATTATCCATTCTTA  984

seq1  CCTCTTAAGACAGTACCCTGTGCAGTGCTTTCTCTGGCCGTTGTCAAGTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTAAGACAGTACCCTGTGCAGTGCTTTCTCTGGCCGTTGTCAAGTC  1034

seq1  TTGTCATGTCAGAGTACTTTCCTTTGTACTGATCCCCTCGGCCATTGCCA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATGTCAGAGTACTTTCCTTTGTACTGATCCCCTCGGCCATTGCCA  1084

seq1  CAATTACCCCTCCAGGGTGCCCCCCCTTCTCTGTAATATACCCTGCCTAT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTACCCCTCCAGGGTGCCCCCCCTTCTCTGTAATATACCCTGCCTAT  1134

seq1  CTTTTACATTATTCTGCCTAAATCCTGTCTGAATTC  1181
      ||||||||||||||||||||||||||||||||||||
seq2  CTTTTACATTATTCTGCCTAAATCCTGTCTGAATTC  1170