BAC Information

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BAC

Clone NameB6Ng01-169C20
Chromosome18 (Build37)
Map Location 15,266,397 - 15,384,542
singlet/doubletdoublet
Overlap geneKctd1, LOC100040151
Upstream geneLOC100040103, LOC100040391, LOC382096, LOC100040129, EG623867, Ss18, LOC100040446, Psma8, Taf4b, LOC669965, EG622268
Downstream geneAqp4, LOC665473, Chst9, LOC670012, LOC100040551, EG225228, LOC100040202, Ppia-ps18_172.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169C20.bB6Ng01-169C20.g
ACCDH960223DH960224
length1,1491,084
definitionDH960223|Mus musculus domesticus DNA, BAC clone: B6Ng01-169C20, 5' end.DH960224|Mus musculus domesticus DNA, BAC clone: B6Ng01-169C20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,266,397 - 15,267,567)(15,383,447 - 15,384,542)
sequence
gaattctcttctagggaacggcaaacaatgctgcaacctgtgctgggcgc
tccaacgcagaagaggtcattaaacaatgggttttgcaagcacaaaggag
gaagggataaggaaatgtgatgtgttttttctccagacgagcagggaaaa
gaggaatgagtctagcctgaaggtacaccacaaacaggtatttggaatcc
caagagttacaagaatgcttcagaccccagaggcagggcttggggaggaa
tctgtgtggctgggtctgtgaagacagagatcatcaagtttgcactggaa
gtttagagcacattcttggccttggggccagtatttagaatttatcttgg
gactggagagatggctcagtggttaagagcactgactgcttttccagagg
tcctgagttcaattcccagcaaccacatggtggctcacaaccatctgtaa
tgggatctgatgccctttctggtgtgtctgaagagagctacaatttactc
atacaaataaaataaataaatcttcagggctggagagatagctcaacggt
taagagcactgattgttcttccagaggtcctgagtttaaatcccagcaac
cacatggtggctcacaaccatccgtaacaggatctgacgccctcttctgg
agtgtctgaaaagtgcacttacatataataaataaatacatacatacata
aatacataaataaatctttaaaaaaaaagaagaagaagaaaataatttat
cttaaaggagttaggcaaggtatttaaaaccagccctagccacccatcca
gtctctgatctaggatagaggactgtctgtcatttcatcattagatataa
atttagcagtgtggagactagcatgtttgctgatatttaagtatatatat
gggcagtgttgctcttggcaggtcacttttgtgctgtctgaccgaatgcc
tgacagcttcacttaaagagaagaaagtgtgtcacttagagggtctgtgg
tcgcttggccccgtgcatttgttccattgtaaggcttagtatgtgcacag
tcgatctgcttcttgtagatgagaaacagaaggggcatgtgcatccctca
ttcggtcagttcgtggatttacttccttcagcgggggttggggagggga
gaattcatacagttgaatccttcttaacagtctgctttacgggaaccttt
attaccgcgacccgcagttctggttctggaatgagggatcttccttgcgc
cagtcccgagttttttcctcgtcccggaattcggcaccaattgttattag
acgcgttctcacgaccggccaggaagaacaccacagaccagaatcttctg
cggcaaagctttattgcttacatcttcaggagccagagtgcaagaagcaa
gagagagcgagaagcaagagagagagaaaacgaaaccccgtccctattaa
agagaattctccttcgcctaggacgtgtcactccctgattggctgcagcc
catcggccgagttgacgtcacggggaaggcagagcacatggagtagagaa
ccaccctcggcatatgcgcagattatttgtttaccacttagaacacagct
gtcagcgccatcttgtaacggcgaatgtgggcgcggctcccaacaaagaa
ctgttctgccaagaaagagggaaactctggcataatctacaatctggatg
gacctaagttaagaaagccagacatacaagataacagctcactagactca
cttaggggtcctctccacaactgctgtttcagacactatcaaatcacagc
agctgctttgaaagacccagcatctatctataaggcaagggtgaagaagt
cagccctgtagagaatgtggacacaagggaggttgtttccttcagctcca
cctctccttttccggcactttcccatctaccttgtgtaagtgcccaactc
accagcaagaatgacaccacaataggatccttctgcacacgtttattgag
agagcattgactgcataggcgaaagacccagagctcagaaatggtgctgc
ttttataggcctaggagtgacgtgtccatacctgattgggttatgctacc
agtacctcatatatgcgtcgggccaggcagtgacttggcaaaaaactctt
atgcacatgcgcacattggtgttacccatatcatggcagtgcccgtgtag
gcagcgcatcttgtatgcatttgcgaatcccaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_15266397_15267567
seq2: B6Ng01-169C20.b_37_1185

seq1  GAATTCTCTTCTAGGGAACGGCAAACAATGCTGCAACCTGTGCTGGGCGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCTAGGGAACGGCAAACAATGCTGCAACCTGTGCTGGGCGC  50

seq1  TCCAACGCAGAAGAGGTCATTAAACAATGGGTTTTGCAAGCACAAAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACGCAGAAGAGGTCATTAAACAATGGGTTTTGCAAGCACAAAGGAG  100

seq1  GAAGGGATAAGGAAATGTGATGTGTTTTTTCTCCAGACGAGCAGGGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGATAAGGAAATGTGATGTGTTTTTTCTCCAGACGAGCAGGGAAAA  150

seq1  GAGGAATGAGTCTAGCCTGAAGGTACACCACAAACAGGTATTTGGAATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATGAGTCTAGCCTGAAGGTACACCACAAACAGGTATTTGGAATCC  200

seq1  CAAGAGTTACAAGAATGCTTCAGACCCCAGAGGCAGGGCTTGGGGAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTTACAAGAATGCTTCAGACCCCAGAGGCAGGGCTTGGGGAGGAA  250

seq1  TCTGTGTGGCTGGGTCTGTGAAGACAGAGATCATCAAGTTTGCACTGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGGCTGGGTCTGTGAAGACAGAGATCATCAAGTTTGCACTGGAA  300

seq1  GTTTAGAGCACATTCTTGGCCTTGGGGCCAGTATTTAGAATTTATCTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGAGCACATTCTTGGCCTTGGGGCCAGTATTTAGAATTTATCTTGG  350

seq1  GACTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTTTTCCAGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTTTTCCAGAGG  400

seq1  TCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAA  450

seq1  TGGGATCTGATGCCCTTTCTGGTGTGTCTGAAGAGAGCTACAATTTACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCTGATGCCCTTTCTGGTGTGTCTGAAGAGAGCTACAATTTACTC  500

seq1  ATACAAATAAAATAAATAAATCTTCAGGGCTGGAGAGATAGCTCAACGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAATAAAATAAATAAATCTTCAGGGCTGGAGAGATAGCTCAACGGT  550

seq1  TAAGAGCACTGATTGTTCTTCCAGAGGTCCTGAGTTTAAATCCCAGCAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCACTGATTGTTCTTCCAGAGGTCCTGAGTTTAAATCCCAGCAAC  600

seq1  CACATGGTGGCTCACAACCATCCGTAACAGGATCTGACGCCCTCTTCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGTGGCTCACAACCATCCGTAACAGGATCTGACGCCCTCTTCTGG  650

seq1  AGTGTCTGAAAAGTGCACTTACATATAATAAATAAATACATACATACATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTGAAAAGTGCACTTACATATAATAAATAAATACATACATACATA  700

seq1  AATACATAAATAAATCTTTAAAAAAAAAGAAGAAGAAGAAAATAATTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATAAATAAATCTTTAAAAAAAAAGAAGAAGAAGAAAATAATTTAT  750

seq1  CTTAAAGGAGTTAGGCAAGGTATTTAAAACCAGCCCTAGCCACCCATCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGGAGTTAGGCAAGGTATTTAAAACCAGCCCTAGCCACCCATCCA  800

seq1  GTCTCTGATCTAGGATAGAGGACTGTCTGTCATTTCATCATTAGATATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGATCTAGGATAGAGGACTGTCTGTCATTTCATCATTAGATATAA  850

seq1  ATTTAGCAGTGTGGAGACTAGCATGTTTGCTGATATTTAAGTATATATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCAGTGTGGAGACTAGCATGTTTGCTGATATTTAAGTATATATAT  900

seq1  GGGCAGTGTTGCTCTTGGCAGGTCACTTTTGTGCTGTTCTGACCGAATGC  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGGCAGTGTTGCTCTTGGCAGGTCACTTTTGTGCTG-TCTGACCGAATGC  949

seq1  CTGACAGCTTCACTTAAAGAGAAGAAAGTGTGTCAACCTTAGAGGGTCTG  1000
      |||||||||||||||||||||||||||||||||||  |||||||||||||
seq2  CTGACAGCTTCACTTAAAGAGAAGAAAGTGTGTCA--CTTAGAGGGTCTG  997

seq1  TGGTCGCTTGGCCCCGTGCATTTGTTCCAATTGTAAAGGCTTTAGTATGT  1050
      |||||||||||||||||||||||||||| ||||| ||||| |||||||||
seq2  TGGTCGCTTGGCCCCGTGCATTTGTTCC-ATTGT-AAGGC-TTAGTATGT  1044

seq1  GGCACAGGTCGATCTTGCCTTCTTGGTAGATGAGAAACAGAGAGGGGGCA  1100
       ||||| ||||||||   |||||| |||||||||||||||| |||||   
seq2  -GCACA-GTCGATCT--GCTTCTT-GTAGATGAGAAACAGA-AGGGG--C  1086

seq1  ATGTGCCACCCCCTCATTCGGTTCAGGTCCGTGGGATTTAACTTCACTTC  1150
      ||||||    ||||||||||| ||| || ||| |||||| ||||| ||||
seq2  ATGTGC--ATCCCTCATTCGG-TCA-GTTCGT-GGATTT-ACTTC-CTTC  1129

seq1  AGCGGGGGTTTGGGGAGGGGA  1171
      |||||||| ||||||||||||
seq2  AGCGGGGG-TTGGGGAGGGGA  1149

seq1: chr18_15383447_15384542
seq2: B6Ng01-169C20.g_68_1151 (reverse)

seq1  TGTGGGAATCGGCAAATGCCATTACAAGATGGCGCTGGCTACCACGGGCC  50
      ||||||| || ||||||||   |||||||| |||||| ||| |||||| |
seq2  TGTGGGATTC-GCAAATGC--ATACAAGAT-GCGCTGCCTA-CACGGG-C  44

seq1  ACTGCCCATGATTATGGGTAAACAACCAATGTGCGCATGTGCATAAGAGT  100
      |||| |||||| |||||||||   ||||||||||||||||||||||||| 
seq2  ACTG-CCATGA-TATGGGTAA--CACCAATGTGCGCATGTGCATAAGAG-  89

seq1  TTTTTTGCCAAGTCACTGCCTGGCCCGACGCATATTAATGAGGTACTGGT  150
      |||||||||||||||||||||||||||||||||||  |||||||||||||
seq2  TTTTTTGCCAAGTCACTGCCTGGCCCGACGCATAT--ATGAGGTACTGGT  137

seq1  AGCATAA-CCAATCAGGTATGGACACGTCACTCCTAGGCCTATATAAGCA  199
      ||||||| |||||||||||||||||||||||||||||||||||| |||||
seq2  AGCATAACCCAATCAGGTATGGACACGTCACTCCTAGGCCTATAAAAGCA  187

seq1  GCACCATTTCTGGGCTCTGGGTCTTTCGCCTATGCAGTCAATGCTCTCTC  249
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCACCATTTCTGAGCTCTGGGTCTTTCGCCTATGCAGTCAATGCTCTCTC  237

seq1  AATAAACGTGTGCAGAAGGATCCTATTGTGGTGTCATTCTTGCTGGTGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACGTGTGCAGAAGGATCCTATTGTGGTGTCATTCTTGCTGGTGAG  287

seq1  TTGGGCACTTACACAAGGTAGATGGGAAAGTGCCGGAAAAGGAGAGGTGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCACTTACACAAGGTAGATGGGAAAGTGCCGGAAAAGGAGAGGTGG  337

seq1  AGCTGAAGGAAACAACCTCCCTTGTGTCCACATTCTCTACAGGGCTGACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAGGAAACAACCTCCCTTGTGTCCACATTCTCTACAGGGCTGACT  387

seq1  TCTTCACCCTTGCCTTATAGATAGATGCTGGGTCTTTCAAAGCAGCTGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACCCTTGCCTTATAGATAGATGCTGGGTCTTTCAAAGCAGCTGCT  437

seq1  GTGATTTGATAGTGTCTGAAACAGCAGTTGTGGAGAGGACCCCTAAGTGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTGATAGTGTCTGAAACAGCAGTTGTGGAGAGGACCCCTAAGTGA  487

seq1  GTCTAGTGAGCTGTTATCTTGTATGTCTGGCTTTCTTAACTTAGGTCCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGTGAGCTGTTATCTTGTATGTCTGGCTTTCTTAACTTAGGTCCAT  537

seq1  CCAGATTGTAGATTATGCCAGAGTTTCCCTCTTTCTTGGCAGAACAGTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTGTAGATTATGCCAGAGTTTCCCTCTTTCTTGGCAGAACAGTTC  587

seq1  TTTGTTGGGAGCCGCGCCCACATTCGCCGTTACAAGATGGCGCTGACAGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGGGAGCCGCGCCCACATTCGCCGTTACAAGATGGCGCTGACAGC  637

seq1  TGTGTTCTAAGTGGTAAACAAATAATCTGCGCATATGCCGAGGGTGGTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTAAGTGGTAAACAAATAATCTGCGCATATGCCGAGGGTGGTTC  687

seq1  TCTACTCCATGTGCTCTGCCTTCCCCGTGACGTCAACTCGGCCGATGGGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTCCATGTGCTCTGCCTTCCCCGTGACGTCAACTCGGCCGATGGGC  737

seq1  TGCAGCCAATCAGGGAGTGACACGTCCTAGGCGAAGGAGAATTCTCTTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCAATCAGGGAGTGACACGTCCTAGGCGAAGGAGAATTCTCTTTA  787

seq1  ATAGGGACGGGGTTTCGTTTTCTCTCTCTCTTGCTTCTCGCTCTCTCTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGACGGGGTTTCGTTTTCTCTCTCTCTTGCTTCTCGCTCTCTCTTG  837

seq1  CTTCTTGCACTCTGGCTCCTGAAGATGTAAGCAATAAAGCTTTGCCGCAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGCACTCTGGCTCCTGAAGATGTAAGCAATAAAGCTTTGCCGCAG  887

seq1  AAGATTCTGGTCTGTGGTGTTCTTCCTGGCCGGTCGTGAGAACGCGTCTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCTGGTCTGTGGTGTTCTTCCTGGCCGGTCGTGAGAACGCGTCTA  937

seq1  ATAACAATTGGTGCCGAATTCCGGGACGAGGAAAAAACTCGGGACTGGCG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAATTGGTGCCGAATTCCGGGACGAGGAAAAAACTCGGGACTGGCG  987

seq1  CAAGGAAGATCCCTCATTCCAGAACCAGAACTGCGGGTCGCGGTAATAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAGATCCCTCATTCCAGAACCAGAACTGCGGGTCGCGGTAATAAA  1037

seq1  GGTTCCCGTAAAGCAGACTGTTAAGAAGGATTCAACTGTATGAATTC  1096
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCCGTAAAGCAGACTGTTAAGAAGGATTCAACTGTATGAATTC  1084