BAC Information

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BAC

Clone NameB6Ng01-170E22
Chromosome18 (Build37)
Map Location 28,193,516 - 28,343,333
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665977, EG665646
Downstream geneEG271505, EG625997, BC051408
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170E22.bB6Ng01-170E22.g
ACCDH961053DH961054
length1,1381,016
definitionDH961053|Mus musculus domesticus DNA, BAC clone: B6Ng01-170E22, 5' end.DH961054|Mus musculus domesticus DNA, BAC clone: B6Ng01-170E22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,342,185 - 28,343,333)(28,193,516 - 28,194,542)
sequence
gaattcctaggcaatacacagtggtaaacaaagcaagcagaaattctttt
gtggaacaatcccctttctgattttaccttttattcttagcacttttatc
tgaaacttcaggcctgagcaaatatctcttagcagaaagtacaaagtcac
agagaacaaagcagtgcagctagcccatgcagatgcaaattttcatttga
aatatctgactatgttgtcttgtatagctgacatttatttttattgcttc
ttaatatttcatcacataaatatatcactcttgttcacccatttggtttt
acatagatatagcatctgtttccaatgaaaaaactccaagaattaaagat
gcttgaagaattgttctaaaaaaacagctggccctatgttgtgaggcagg
actcacctcctgggtcaaaagatggtcaggtcttcatccaccatggaaat
cactgtggagatttatcaaaaaactaaacattaaactgccatataactca
cttatacaactcataagtttatgttcaaaaagctgtaagacaacacacag
tttccatatttaaatattctgtatatttctacactatttgcaataaccag
aaaatgaaacacactgtgatatccatcagcagaagtatttataaaaaaag
gggcaaacacacacacacacacacacacacacacacacacacacacacat
acacacacaccacaccacaccacaaacatgcacacactgagagagttgtc
ttccactataaagttgaatagaattatgtcacctgaagaaatatggatgg
gcctagcatcataatgcaaggtgaaattagataaagtcaaagaaatatac
cacatcatcttgtaatgcagtttttaaatatagattctaggatcactatt
taaacacttaatatttaataatgaagatcagatcctcaaaatccatgtaa
aatgagtagtttggggggtatacttgtaatttcagtgttatcagatagag
gagtgatatcttgatcagtgcttctaaagacaagccatttcttcaactct
gagtgtgagaacttctcatgaatacgaagattctgacaagaaaggccatt
gaatatcaaccctcaatgttcccctactagcatttaca
gaattccttattttcttcatctagaaagccacattccttttagtacactt
tagtcacttacaaaacattcttttaagtgttatatgaaaatctaacacat
agatgggagtaaaattcccagattacaacagaactagaagtaacaaataa
agaagcagtgaatagaaatgtgaaaaaaattacttggttgatgttacttc
agttgatttatgattaaaataaataatttttcttcacaacctattattta
agtcccagggagtatagaagattaatggtaaaatattcaaatggacgcca
acaatgaatactgctaggttcatcttctcattgaacattatatgcaactt
cctgccatgaacacaccatgatcttaaaaatgggtttttaacaatattgc
tcattaaccaactcatcagttccttttctcccccaagtctcatcagagga
agtagcaaaataaacaaaaacctcttgctttaaagtagcctaccatctta
ccagagagtgtgctaagtcttccctgggcaatgtatgaccacttcattta
tattaatttaatttagaaaattaaaaaaaaaaacaattcttattttcctc
tctgaatgccaagcatgttccacatgtgacttcccatcgaagcaagcctg
aaggaacacaccattttagaaactgagttgggtagactctcttttgttct
atcagcaacaacccaaaacaacaagaagaagaattaatacttccccccat
caaaatcctcttcatcaaatattagtggctattagggtaatgtaaccaat
ttctcttgttcttcaacctgaaagcagaaggaaagtgtgggtaaccacaa
taagcttcttgtgtattatgaagttctgggtaagacccgagtcagttata
tcatttgagtctagtttatgctcagggatataagctaaataaccataact
gatggattctgggatactgtctatcatactatttctatggatgggatatt
ctagaaactaggttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_28342185_28343333
seq2: B6Ng01-170E22.b_48_1185 (reverse)

seq1  TGTAAATGCTAAGTAGTGGAGAACA-TGA-GGTTGATATTCAAT-GCCTT  47
      |||||||||| ||||  || ||||| ||| |||||||||||||| |||||
seq2  TGTAAATGCT-AGTA--GGGGAACATTGAGGGTTGATATTCAATGGCCTT  47

seq1  TCTTGGTCAGAATTCTTCGTATTCATTGAGAAG-TCTCACACTCAGAGTT  96
      |||| ||||||| |||||||||||| ||||||| |||||||||||||| |
seq2  TCTT-GTCAGAA-TCTTCGTATTCA-TGAGAAGTTCTCACACTCAGAG-T  93

seq1  TGAAGAAATGGCTTGTCTTTAGAGCCACCTTGATCAAGATATCACTTCCT  146
      |||||||||||||||||||||||  |||  ||||||||||||||| ||||
seq2  TGAAGAAATGGCTTGTCTTTAGAAGCAC--TGATCAAGATATCAC-TCCT  140

seq1  CTATCCTGATAACACTGAAATTACAAGTATACCCCCCAAACTACCTCATT  196
      |||| |||||||||||||||||||||||||||||||||||||| |||| |
seq2  CTAT-CTGATAACACTGAAATTACAAGTATACCCCCCAAACTA-CTCA-T  187

seq1  TTTACATGGATTTTGAGGATCTGATCTTCATTATTAAATATTAAGTGTTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTACATGGATTTTGAGGATCTGATCTTCATTATTAAATATTAAGTG-TT  236

seq1  TAAATAGTGATCCTAGAATCTATATTTAAAAACCTGCATTACAAGATGAT  296
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAAATAGTGATCCTAGAATCTATATTTAAAAA-CTGCATTACAAGATGAT  285

seq1  GTGGTATATTTCTTTGACTTTATCTAATTTCACCTTGCATTATGATGCTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTATATTTCTTTGACTTTATCTAATTTCACCTTGCATTATGATGCTA  335

seq1  GGCCCATCCATATTTCTTCAGGTGACATAATTCTATTCAACTTTATAGTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCATCCATATTTCTTCAGGTGACATAATTCTATTCAACTTTATAGTG  385

seq1  GAAGACAACTCTCTCAGTGTGTGCATGTTTGTGGTGTGGTGTGGTGTGTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAACTCTCTCAGTGTGTGCATGTTTGTGGTGTGGTGTGGTGTGTG  435

seq1  TGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTG  485

seq1  CCCCTTTTTTTATAAATACTTCTGCTGATGGATATCACAGTGTGTTTCAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTTTTTATAAATACTTCTGCTGATGGATATCACAGTGTGTTTCAT  535

seq1  TTTCTGGTTATTGCAAATAGTGTAGAAATATACAGAATATTTAAATATGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGTTATTGCAAATAGTGTAGAAATATACAGAATATTTAAATATGG  585

seq1  AAACTGTGTGTTGTCTTACAGCTTTTTGAACATAAACTTATGAGTTGTAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTGTGTTGTCTTACAGCTTTTTGAACATAAACTTATGAGTTGTAT  635

seq1  AAGTGAGTTATATGGCAGTTTAATGTTTAGTTTTTTGATAAATCTCCACA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGTTATATGGCAGTTTAATGTTTAGTTTTTTGATAAATCTCCACA  685

seq1  GTGATTTCCATGGTGGATGAAGACCTGACCATCTTTTGACCCAGGAGGTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTCCATGGTGGATGAAGACCTGACCATCTTTTGACCCAGGAGGTG  735

seq1  AGTCCTGCCTCACAACATAGGGCCAGCTGTTTTTTTAGAACAATTCTTCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGCCTCACAACATAGGGCCAGCTGTTTTTTTAGAACAATTCTTCA  785

seq1  AGCATCTTTAATTCTTGGAGTTTTTTCATTGGAAACAGATGCTATATCTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTTTAATTCTTGGAGTTTTTTCATTGGAAACAGATGCTATATCTA  835

seq1  TGTAAAACCAAATGGGTGAACAAGAGTGATATATTTATGTGATGAAATAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAACCAAATGGGTGAACAAGAGTGATATATTTATGTGATGAAATAT  885

seq1  TAAGAAGCAATAAAAATAAATGTCAGCTATACAAGACAACATAGTCAGAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGCAATAAAAATAAATGTCAGCTATACAAGACAACATAGTCAGAT  935

seq1  ATTTCAAATGAAAATTTGCATCTGCATGGGCTAGCTGCACTGCTTTGTTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAATGAAAATTTGCATCTGCATGGGCTAGCTGCACTGCTTTGTTC  985

seq1  TCTGTGACTTTGTACTTTCTGCTAAGAGATATTTGCTCAGGCCTGAAGTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGACTTTGTACTTTCTGCTAAGAGATATTTGCTCAGGCCTGAAGTT  1035

seq1  TCAGATAAAAGTGCTAAGAATAAAAGGTAAAATCAGAAAGGGGATTGTTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATAAAAGTGCTAAGAATAAAAGGTAAAATCAGAAAGGGGATTGTTC  1085

seq1  CACAAAAGAATTTCTGCTTGCTTTGTTTACCACTGTGTATTGCCTAGGAA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAGAATTTCTGCTTGCTTTGTTTACCACTGTGTATTGCCTAGGAA  1135

seq1  TTC  1149
      |||
seq2  TTC  1138

seq1: chr18_28193516_28194542
seq2: B6Ng01-170E22.g_68_1083

seq1  GAATTCCTTATTTTCTTCATCTAGAAAGCCACATTCCTTTTAGTACACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTATTTTCTTCATCTAGAAAGCCACATTCCTTTTAGTACACTT  50

seq1  TAGTCACTTACAAAACATTCTTTTAAGTGTTATATGAAAATCTAACACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCACTTACAAAACATTCTTTTAAGTGTTATATGAAAATCTAACACAT  100

seq1  AGATGGGAGTAAAATTCCCAGATTACAACAGAACTAGAAGTAACAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGAGTAAAATTCCCAGATTACAACAGAACTAGAAGTAACAAATAA  150

seq1  AGAAGCAGTGAATAGAAATGTGAAAAAAATTACTTGGTTGATGTTACTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGTGAATAGAAATGTGAAAAAAATTACTTGGTTGATGTTACTTC  200

seq1  AGTTGATTTATGATTAAAATAAATAATTTTTCTTCACAACCTATTATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGATTTATGATTAAAATAAATAATTTTTCTTCACAACCTATTATTTA  250

seq1  AGTCCCAGGGAGTATAGAAGATTAATGGTAAAATATTCAAATGGACGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCAGGGAGTATAGAAGATTAATGGTAAAATATTCAAATGGACGCCA  300

seq1  ACAATGAATACTGCTAGGTTCATCTTCTCATTGAACATTATATGCAACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAATACTGCTAGGTTCATCTTCTCATTGAACATTATATGCAACTT  350

seq1  CCTGCCATGAACACACCATGATCTTAAAAATGGGTTTTTAACAATATTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCATGAACACACCATGATCTTAAAAATGGGTTTTTAACAATATTGC  400

seq1  TCATTAACCAACTCATCAGTTCCTTTTCTCCCCCAAGTCTCATCAGAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAACCAACTCATCAGTTCCTTTTCTCCCCCAAGTCTCATCAGAGGA  450

seq1  AGTAGCAAAATAAACAAAAACCTCTTGCTTTAAAGTAGCCTACCATCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCAAAATAAACAAAAACCTCTTGCTTTAAAGTAGCCTACCATCTTA  500

seq1  CCAGAGAGTGTGCTAAGTCTTCCCTGGGCAATGTATGACCACTTCATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAGTGTGCTAAGTCTTCCCTGGGCAATGTATGACCACTTCATTTA  550

seq1  TATTAATTTAATTTAGAAAATTAAAAAAAAAAACAATTCTTATTTTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATTTAATTTAGAAAATTAAAAAAAAAAACAATTCTTATTTTCCTC  600

seq1  TCTGAATGCCAAGCATGTTCCACATGTGACTTCCCATCGAAGCAAGCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATGCCAAGCATGTTCCACATGTGACTTCCCATCGAAGCAAGCCTG  650

seq1  AAGGAACACACCATTTTAGAAACTGAGTTGGGTAGACTCTCTTTTGTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACACACCATTTTAGAAACTGAGTTGGGTAGACTCTCTTTTGTTCT  700

seq1  ATCAGCAACAACCCAAAACAACAAGAAGAAGAATTAATACTTCCCCCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCAACAACCCAAAACAACAAGAAGAAGAATTAATACTTCCCCCCAT  750

seq1  CAAAATCCTCTTCATCAAATATTAGTGGCTATTAGGGTAATGTAACCAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCCTCTTCATCAAATATTAGTGGCTATTAGGGTAATGTAACCAAT  800

seq1  TTCTCTTGTTCTTCAACCTGAAAGCAGAAGGAAAGTGTGGGTAACCACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTGTTCTTCAACCTGAAAGCAGAAGGAAAGTGTGGGTAACCACAA  850

seq1  TAAGCTTCTTGTGTATTATGAAGTTCTGGGTAAGACCCGAAGTCAGTTAT  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAAGCTTCTTGTGTATTATGAAGTTCTGGGTAAGACCCG-AGTCAGTTAT  899

seq1  ATCATTTGAGTCTAGTTTATGCTCAGGGATATAAGCTAAAATAACCATAA  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATCATTTGAGTCTAGTTTATGCTCAGGGATATAAGCT-AAATAACCATAA  948

seq1  ACCTGATGGATTCTGGATTACTTGTCTATCATAACTATTTCTATGGATGG  1000
        ||||||||||||||  ||| |||||||||| |||||||||||||||||
seq2  --CTGATGGATTCTGGGATAC-TGTCTATCAT-ACTATTTCTATGGATGG  994

seq1  AATTATTTTCTAGAAAACTTAGGTTAC  1027
          || |||||||||   ||||||||
seq2  ---GATATTCTAGAAA--CTAGGTTAC  1016