BAC Information

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BAC

Clone NameB6Ng01-170J07
Chromosome18 (Build37)
Map Location 64,335,897 - 64,491,067
singlet/doubletdoublet
Overlap geneSt8sia3, LOC433193
Upstream gene9030411M15Rik, LOC627792, Txnl1, Wdr7, LOC629436, LOC667773
Downstream geneOnecut2, LOC667783, LOC100043304, Fech, Nars, Atp8b1, LOC629480, Nedd4l, Alpk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170J07.bB6Ng01-170J07.g
ACCDH961257DH961258
length228946
definitionDH961257|Mus musculus domesticus DNA, BAC clone: B6Ng01-170J07, 5' end.DH961258|Mus musculus domesticus DNA, BAC clone: B6Ng01-170J07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,490,840 - 64,491,067)(64,335,897 - 64,336,834)
sequence
ttggagtcattctgaacaccacgtcttttacattataaacgtgtgcgttt
gtgacatgccctgttccgattcttttaggaggcaaggagaccccttatgg
tcgagggatgcggatatggattcatgaagatgtttttaagaatccagatc
aaatggtctgtcctggtttgatagagccagacagtaaaggctggggtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtg
gaattctaagcacatatgttgaaaaagaatcacaaatgaaagatgagccc
tgtggactccaggtttggactatgtgagagggcccaagaagtggctgttt
cttgggtatgagctactgcttcaccattcacatacatttgaagtcagcac
tcagatgtttatacctatgaactgttcattaatctgaaataaagtgaaaa
tgatggtaagaaaactaaaagatactatatagacaggggaagggggtggg
agattaattagaatggctgtggtctaactagttcaacaatgactgtctac
caatggaagttccaagaatctagtagttgttcagtccacaaggctagatg
tcccagatggtcctcagtatattccagaatcccaaagaagtaggctctaa
tgccagtgaaggaaaggacttgctagtgagagcaagaagacaaagaaagc
aagtttccttcttccatgtctttatataggctggtagcagaagacgtggt
ccagactaaaggcagatctctcaaaagatctggattaaaactgtatttta
ccacctcaaagatccaggttagaagtaggtcttcccactttaaatgattt
aattaaaaataaaatcccctcacagatgtgcccagccatttcaggtttta
gttcattctaaatgtagtcaagttgccagccaagaagagtcctcacactg
atttccacagtgaattctaggtcaagttggactacaaagtcggacattat
ctacaaacagcaatggaaagccaacaaaaagcaatacaaccctttacatg
gggccaactcaatgctagtctctcaccttcaatgcgctcagtgggggatc
tcttaccacacagagtagagccttcttcagcctacctgattgactgtctt
ttagccttgtaggttaaacactaaagggttagaaggtcacacttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_64490840_64491067
seq2: B6Ng01-170J07.b_51_278 (reverse)

seq1  CACACACACACACACACACACACACACACACACCCCAGCCTTTACTGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACCCCAGCCTTTACTGTCT  50

seq1  GGCTCTATCAAACCAGGACAGACCATTTGATCTGGATTCTTAAAAACATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTATCAAACCAGGACAGACCATTTGATCTGGATTCTTAAAAACATC  100

seq1  TTCATGAATCCATATCCGCATCCCTCGACCATAAGGGGTCTCCTTGCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGAATCCATATCCGCATCCCTCGACCATAAGGGGTCTCCTTGCCTC  150

seq1  CTAAAAGAATCGGAACAGGGCATGTCACAAACGCACACGTTTATAATGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGAATCGGAACAGGGCATGTCACAAACGCACACGTTTATAATGTA  200

seq1  AAAGACGTGGTGTTCAGAATGACTCCAA  228
      ||||||||||||||||||||||||||||
seq2  AAAGACGTGGTGTTCAGAATGACTCCAA  228

seq1: chr18_64335897_64336834
seq2: B6Ng01-170J07.g_66_1011

seq1  GAATTCTAAGCACATATGTTGAAAAAGAATCACAAATGAAAGATGAGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGCACATATGTTGAAAAAGAATCACAAATGAAAGATGAGCCC  50

seq1  TGTGGACTCCAGGTTTGGACTATGTGAGAGGGCCCAAGAAGTGGCTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACTCCAGGTTTGGACTATGTGAGAGGGCCCAAGAAGTGGCTGTTT  100

seq1  CTTGGGTATGAGCTACTGCTTCACCATTCACATACATTTGAAGTCAGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTATGAGCTACTGCTTCACCATTCACATACATTTGAAGTCAGCAC  150

seq1  TCAGATGTTTATACCTATGAACTGTTCATTAATCTGAAATAAAGTGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGTTTATACCTATGAACTGTTCATTAATCTGAAATAAAGTGAAAA  200

seq1  TGATGGTAAGAAAACTAAAAGATACTATATAGACAGGGGAAGGGGGTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTAAGAAAACTAAAAGATACTATATAGACAGGGGAAGGGGGTGGG  250

seq1  AGATTAATTAGAATGGCTGTGGTCTAACTAGTTCAACAATGACTGTCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAATTAGAATGGCTGTGGTCTAACTAGTTCAACAATGACTGTCTAC  300

seq1  CAATGGAAGTTCCAAGAATCTAGTAGTTGTTCAGTCCACAAGGCTAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAAGTTCCAAGAATCTAGTAGTTGTTCAGTCCACAAGGCTAGATG  350

seq1  TCCCAGATGGTCCTCAGTATATTCCAGAATCCCAAAGAAGTAGGCTCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGATGGTCCTCAGTATATTCCAGAATCCCAAAGAAGTAGGCTCTAA  400

seq1  TGCCAGTGAAGGAAAGGACTTGCTAGTGAGAGCAAGAAGACAAAGAAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGTGAAGGAAAGGACTTGCTAGTGAGAGCAAGAAGACAAAGAAAGC  450

seq1  AAGTTTCCTTCTTCCATGTCTTTATATAGGCTGGTAGCAGAAGACGTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCCTTCTTCCATGTCTTTATATAGGCTGGTAGCAGAAGACGTGGT  500

seq1  CCAGACTAAAGGCAGATCTCTCAAAAGATCTGGATTAAAACTGTATTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTAAAGGCAGATCTCTCAAAAGATCTGGATTAAAACTGTATTTTA  550

seq1  CCACCTCAAAGATCCAGGTTAGAAGTAGGTCTTCCCACTTTAAATGATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCAAAGATCCAGGTTAGAAGTAGGTCTTCCCACTTTAAATGATTT  600

seq1  AATTAAAAATAAAATCCCCTCACAGATGTGCCCAGCCA-TTCAGGTTTTA  649
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AATTAAAAATAAAATCCCCTCACAGATGTGCCCAGCCATTTCAGGTTTTA  650

seq1  GTTCATTCTAAATGTAGTCAAGTTGCCAGCCAAGAAGAGTCCTCACACTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTCTAAATGTAGTCAAGTTGCCAGCCAAGAAGAGTCCTCACACTG  700

seq1  A-TTCCACAGTGAATTCTAGGTCAAGTTGGACTACAAAGTCGGACATTAT  748
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCACAGTGAATTCTAGGTCAAGTTGGACTACAAAGTCGGACATTAT  750

seq1  CTACAAACAGCAATGG-AAGCCAACAAAAAGCAATACAA-CCTTAACAT-  795
      |||||||||||||||| |||||||||||||||||||||| |||| |||| 
seq2  CTACAAACAGCAATGGAAAGCCAACAAAAAGCAATACAACCCTTTACATG  800

seq1  GGGCCAACTCAATGCTAGTCTCTCACC-TCAATGCGCTCAGTGGGGGATC  844
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGGCCAACTCAATGCTAGTCTCTCACCTTCAATGCGCTCAGTGGGGGATC  850

seq1  TCTTACCACACAGAGTAGAGCC-TCTTCAGCCTACCTGATTGACTG-CCT  892
      |||||||||||||||||||||| ||||||||||||||||||||||| | |
seq2  TCTTACCACACAGAGTAGAGCCTTCTTCAGCCTACCTGATTGACTGTCTT  900

seq1  TTAGCCTTGTAGGTTAAACACTAAAGGGTAAGAAGGTCACACTTTA  938
      ||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTAGCCTTGTAGGTTAAACACTAAAGGGTTAGAAGGTCACACTTTA  946