BAC Information

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BAC

Clone NameB6Ng01-171D06
Chromosome18 (Build37)
Map Location 34,328,585 - 34,329,466
singlet/doubletsinglet
Overlap genenone
Upstream geneCamk4, Stard4, EG433170, D0H4S114, ENSMUSG00000073610, LOC666281, LOC100041258, Epb4.1l4a, EG666296, Ppia-ps18_318.1, Ppia-ps18_319.1
Downstream geneLOC666313, Apc, Srp19, Reep5, Pkd2l2, 2610024E20Rik, Wnt8a, Nme5, 4933408B17Rik, Brd8, Kif20a, Cdc23, Gfra3, Cdc25c, LOC100041859, 2810012G03Rik, LOC100041879, LOC100041887, Jmjd1b, Reep2, Egr1, Etf1, Hspa9, LOC100041377, EG626954, LOC100041951, Ctnna1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171D06.bB6Ng01-171D06.g
ACCGA000149GA000150
length372884
definitionB6Ng01-171D06.b B6Ng01-171D06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tgtaagaaggttacctattccgtgtaacattcaaatttacttctagtaga
gactgtgaaactaattatccattacaaagaatggagccagaatagcccag
ggctggtctgcagagtgtttacttgggacaatagccagccttatccagac
aagggaattcacaatggcctagtgaatagctaggtttaccacaaaaaagt
tagggaatcccacggagacaggaatcttcactacagccaggtatagcagg
ctacattgcatattagaagcaagttggtgagttcttctgacaaatggaga
ttctccacagatacttaaaagttacactcatacaagaatttatcaaggcc
taggaaataggggggggggggg
gaattcagaccaatcagaaagtgattacaactcaagataaagcaagccaa
atgatggatatcaaggggtttcatatgggaaaaaaagtgtgaaggctgga
ttcaaggaagacaagattctaggaagcaggtgtggcttgcactggaccat
tctgggtagaggctacagggcaggcacaaacagacatgtctgacttctgt
gactgtgggaagaagggactgcatccgtggtgggcatatgatgatagtgt
ggtacacttatagaacactccaaagagcaagatgagatgcaataatcaac
agagagttgacctgttaaaaaaaacatggctcaaggaaatttgtttagct
gcaagaagtttgggtagcttaggaaatggaaaatgtctctgattatccta
aaaatatggtttgtaggacatggattctttcattttgtcctattttctca
ggcatggacatgaaatgatttccccccccccctcggttacaatcacacaa
tattagctatttctggctaacgtaacatagttcttgaagaagtactattt
ctagaaagcatcctgccagtgaatcgtgcaacttggcagctggtaccttg
ctcagtatcagaagagaggccctgcatgtcttaacaagctttcccgggac
tagtctctgtgtctctgatgtgtttattgtacacagatgccaaccatgca
gtgatttgggatctttgtgattgtgctaagggtcttgtgtggaatcaaca
gtgaaaccggggagcccaaaggacgcacagaagaagtgagcaacaatggg
aaggaaaagggaggggtgggagggaaaatttataaataagtaacacctac
agagtcagaaaagaagcccgtggcggtggtgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_34328585_34329466
seq2: B6Ng01-171D06.g_67_950 (reverse)

seq1  TTTC-CCACCACCACGGGCTTCTCTTTCCTGACTCTGTAGGTGTTACTTA  49
      |||| ||||| |||||||||  ||||| ||||||||||||||||||||||
seq2  TTTCACCACCGCCACGGGCT--TCTTTTCTGACTCTGTAGGTGTTACTTA  48

seq1  TTTCTAAATTCTCCCTCCCACCCCT-CCTTTTCCTT-CCATTGTTGCTCA  97
      ||| |||||| |||||||||||||| |||||||||| |||||||||||||
seq2  TTTATAAATTTTCCCTCCCACCCCTCCCTTTTCCTTCCCATTGTTGCTCA  98

seq1  CTTCTTCTGTGCGTCCTTTGGGCTCCCCGGTTTCACTGTTGATTCCACAC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTGTGCGTCCTTTGGGCTCCCCGGTTTCACTGTTGATTCCACAC  148

seq1  AAGACCCTTAGCACAATCACAAAGATCCCAAATCACTGCATGGTTGGCAT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCCTTAGCACAATCACAAAGATCCCAAATCACTGCATGGTTGGCAT  198

seq1  CTGTGTACAAT-AACACATCAGAGACACAGAGACTAGTCCCGGGAAAGCT  246
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTACAATAAACACATCAGAGACACAGAGACTAGTCCCGGGAAAGCT  248

seq1  TGTTAAGACATGCAGGGCCTCTCTTCTGATACTGAGCAAGGTACCAGCTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGACATGCAGGGCCTCTCTTCTGATACTGAGCAAGGTACCAGCTG  298

seq1  CCAAGTTGCACGATTCACTGGCAGGATGCTTTCTAGAAATAGTACTTCTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTGCACGATTCACTGGCAGGATGCTTTCTAGAAATAGTACTTCTT  348

seq1  CAAGAACTATGTTACGTTAGCCAGAAATAGCTAATATTGTGTGATTGTAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACTATGTTACGTTAGCCAGAAATAGCTAATATTGTGTGATTGTAA  398

seq1  CCGAGGGGGGGGGGGAAATCATTTCATGTCCATGCCTGAGAAAATAGGAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGGGGGGGGGGGAAATCATTTCATGTCCATGCCTGAGAAAATAGGAC  448

seq1  AAAATGAAAGAATCCATGTCCTACAAACCATATTTTTAGGATAATCAGAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAAGAATCCATGTCCTACAAACCATATTTTTAGGATAATCAGAG  498

seq1  ACATTTTCCATTTCCTAAGCTACCCAAACTTCTTGCAGCTAAACAAATTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCCATTTCCTAAGCTACCCAAACTTCTTGCAGCTAAACAAATTT  548

seq1  CCTTGAGCCATGTTTTTTTTAACAGGTCAACTCTCTGTTGATTATTGCAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGCCATGTTTTTTTTAACAGGTCAACTCTCTGTTGATTATTGCAT  598

seq1  CTCATCTTGCTCTTTGGAGTGTTCTATAAGTGTACCACACTATCATCATA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTTGCTCTTTGGAGTGTTCTATAAGTGTACCACACTATCATCATA  648

seq1  TGCCCACCACGGATGCAGTCCCTTCTTCCCACAGTCACAGAAGTCAGACA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACCACGGATGCAGTCCCTTCTTCCCACAGTCACAGAAGTCAGACA  698

seq1  TGTCTGTTTGTGCCTGCCCTGTAGCCTCTACCCAGAATGGTCCAGTGCAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTTTGTGCCTGCCCTGTAGCCTCTACCCAGAATGGTCCAGTGCAA  748

seq1  GCCACACCTGCTTCCTAGAATCTTGTCTTCCTTGAATCCAGCCTTCACAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACCTGCTTCCTAGAATCTTGTCTTCCTTGAATCCAGCCTTCACAC  798

seq1  TTTTTTTCCCATATGAAACCCCTTGATATCCATCATTTGGCTTGCTTTAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCCCATATGAAACCCCTTGATATCCATCATTTGGCTTGCTTTAT  848

seq1  CTTGAGTTGTAATCACTTTCTGATTGGTCTGAATTC  882
      ||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTTGTAATCACTTTCTGATTGGTCTGAATTC  884