BAC Information

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BAC

Clone NameB6Ng01-171L15
Chromosome18 (Build37)
Map Location 72,688,262 - 72,797,411
singlet/doubletdoublet
Overlap genenone
Upstream geneDcc, LOC629684
Downstream geneLOC100043411, LOC100042955, Rkhd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171L15.bB6Ng01-171L15.g
ACCGA000529GA000530
length7031,022
definitionB6Ng01-171L15.b B6Ng01-171L15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,688,262 - 72,688,961)(72,796,401 - 72,797,411)
sequence
gaattcttctaatagaatagattctattagaacatatctctctctctctc
tctctctctccctctctctctctctctctctctctctttctctctctctc
ccactgatgtatttatcaaattgacatttatttgtaagcccaactgtgtt
tccaattgacaaaatttgaactttcctgagaactaagggttcatatttcc
caaagaataaaaccaacgaatagaatactgtagagaggagagcaaaaggc
acacttgtaggaggggaaaagtccaaaagtaaaatctaagctaggggctg
ggttaagtattggttacttcaatgtagtttcacaaattcttttgttcact
gaattggctcaaatgacctttcttattgcgtaataaagaaaggctatttc
actgtttatattgaaatataaaataccgtacagaaatcttgaaagagtat
cacagaaacccgactctattgtctcgaagactaggacccaaaagtttcag
aagttacctccatgttttgtagggaagtcttgaattgtgaacagcataat
cagagcaaaccaccaaaggaatggccctcagccttctcttccatcaatgt
tccctgcttgctatcccttctccgtctcactcttgctttctctggggctc
tgtctctgaaatacactactttgtccttaaacaacaaggaataattcttt
gaa
gaattcaatgttgtgtatagttttgacaagggaaagcgatggaaaaatca
tttcagactggagccatatagaaacagtgaatgaaacaccgcagtgcttg
aaggttcatgttatgtggctggacagaggacaatttagaatcgtcagagg
aaaaccccttcatccagagatctctgcaccttgggagcaagcctaaggaa
gtggtcagagcaaactatggaggactttgagcaaatcatgagttaacagg
gacatttcatgaatattgatatagtgtggtttgcaagtggggcataagct
gaaagaaattggaagcaggccaagccatttagcgtttgattgagagctgt
gttagagcctgattacctcagtgttcccacatgtaataattaaatcagct
aggatctcatgactcagagaaatgagatttaagttttgatctatacctct
tcctggtaaaggatgagaggctttttatagaggaggtgtgttagacatgc
aggttttccctctctggtcttcttggagtcagtactgagtgcctcacctt
tgagaaaaccgccatagacagacacatcttatggcattatttcttgtgat
tgaagaaactagtatgtaagtttggtcatttccaccttgtttgaagcaaa
caaaaatgaataatcttggtgtcgcataagagaacagataaacagatttt
gggaaggcaatttcttcttgcaaaagggtgttccagaacccaaagctggc
tagcaagttctcctagacaccagcttcacttgttgtggttgtgtttttgg
tttttggttttgtattttttattctaatgcatgtggtgtctgacctcatg
gtctttctcagcagggtagtttaaaaggattcagtcagaagaagaaattg
aacgaaagggagatgatggtggtccatttcagattcaacaaagttcttag
ggatgcaatggaagtggtgcttttgctatagcaaaagctcttaccaggtt
aggagagattacaataatttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_72688262_72688961
seq2: B6Ng01-171L15.b_49_751

seq1  GAATTCTTCTAATAGAATAGATTCTATTAGAACATATCTCTCTCTCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTAATAGAATAGATTCTATTAGAACATATCTCTCTCTCTCTC  50

seq1  TCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTC  100

seq1  CCACTGATGTATTTATCAAATTGACATTTATTTGTAAGCCCAACTGTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGATGTATTTATCAAATTGACATTTATTTGTAAGCCCAACTGTGTT  150

seq1  TCCAATTGACAAAATTTGAACTTTCCTGAGAACTAAGGGTTCATATTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTGACAAAATTTGAACTTTCCTGAGAACTAAGGGTTCATATTTCC  200

seq1  CAAAGAATAGAACCAAAGAATAGAATACTGTAGAGAGGAGAGCAAAAGGC  250
      ||||||||| |||||| |||||||||||||||||||||||||||||||||
seq2  CAAAGAATAAAACCAACGAATAGAATACTGTAGAGAGGAGAGCAAAAGGC  250

seq1  AGACTTGTAGGAGGGGAAAAGTCCAAAAGTAAAATCTAAGCTAGGGGCTG  300
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGTAGGAGGGGAAAAGTCCAAAAGTAAAATCTAAGCTAGGGGCTG  300

seq1  GGTTAAGTATTGGTTACTTCAATGTAGTTTCACAAATTCTTTTGTTCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAGTATTGGTTACTTCAATGTAGTTTCACAAATTCTTTTGTTCACT  350

seq1  GAATTGGCTCAAATGACCTTTCTTATTGCATATTAAAGAAAGGCTATTTC  400
      ||||||||||||||||||||||||||||| || |||||||||||||||||
seq2  GAATTGGCTCAAATGACCTTTCTTATTGCGTAATAAAGAAAGGCTATTTC  400

seq1  ACCATTTATATTGAAATATAAAATACAGTACAGAAATCTTGAAAGAGTAG  450
      ||  |||||||||||||||||||||| |||||||||||||||||||||| 
seq2  ACTGTTTATATTGAAATATAAAATACCGTACAGAAATCTTGAAAGAGTAT  450

seq1  CACAGAAACCCGACTCTATTGTCTCGAAGACTAGGACCCAAAAGTTTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAACCCGACTCTATTGTCTCGAAGACTAGGACCCAAAAGTTTCAG  500

seq1  AAGTTACCTCCATGTTTTGTAGGGAAGTCTTGAATTGTGAACAGCATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACCTCCATGTTTTGTAGGGAAGTCTTGAATTGTGAACAGCATAAT  550

seq1  CAGAGCAAACCACCAAAGGAATGGCCCTCACCCTCCTCTCCCATCAGTGT  600
      |||||||||||||||||||||||||||||| ||| |||| |||||| |||
seq2  CAGAGCAAACCACCAAAGGAATGGCCCTCAGCCTTCTCTTCCATCAATGT  600

seq1  TCCCTGCTTGCTAT-CCTTCTCCTTCTCACTCTTGCTTTCTCTGGGGCTC  649
      |||||||||||||| |||||||| ||||||||||||||||||||||||||
seq2  TCCCTGCTTGCTATCCCTTCTCCGTCTCACTCTTGCTTTCTCTGGGGCTC  650

seq1  TGTCTCTG-AATACCCT-CTTTGTCCTTAAACAACAAAGGATAATTCTTT  697
      |||||||| ||||| || ||||||||||||||||||| | ||||||||||
seq2  TGTCTCTGAAATACACTACTTTGTCCTTAAACAACAAGGAATAATTCTTT  700

seq1  GAA  700
      |||
seq2  GAA  703

seq1: chr18_72796401_72797411
seq2: B6Ng01-171L15.g_66_1087 (reverse)

seq1  GCAAA-TATTTTAATCTCTCCT-ACCTGGTAA-AACTTTTGCT-TATACA  46
      ||||| |||| ||||||||||| ||||||||| | |||||||| ||   |
seq2  GCAAATTATTGTAATCTCTCCTAACCTGGTAAGAGCTTTTGCTATAGCAA  50

seq1  AAGCA-CACCTCCATTGCATCCCTAAGAACTTGGT--GATCTG-AATGGG  92
      ||||| ||| |||||||||||||||||||||| ||   ||||| ||||| 
seq2  AAGCACCACTTCCATTGCATCCCTAAGAACTTTGTTGAATCTGAAATGGA  100

seq1  CCACCTTCATCTCCCTTTCCTTC-ATTTCT--CTCTGACTGATTCTTTTT  139
      ||||| ||||||||||||| ||| ||||||   ||||||||| || ||||
seq2  CCACCATCATCTCCCTTTCGTTCAATTTCTTCTTCTGACTGAATCCTTTT  150

seq1  AAACTACCCTGCTGAGAAAGACCATGAGGTCAGACACCACATGCATTAGA  189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACCCTGCTGAGAAAGACCATGAGGTCAGACACCACATGCATTAGA  200

seq1  ATAAAAAATACAAAACCAAAAACCAAAAACACAACCACAACAAGTGAAGC  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAATACAAAACCAAAAACCAAAAACACAACCACAACAAGTGAAGC  250

seq1  TGGTGTCTAGGAGAACTTGCTAGCCAGCTTTGGGTTCTGGAACACCCTTT  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCTAGGAGAACTTGCTAGCCAGCTTTGGGTTCTGGAACACCCTTT  300

seq1  TGCAAGAAGAAATTGCCTTCCCAAAATCTGTTTATCTGTTCTCTTATGCG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGAAGAAATTGCCTTCCCAAAATCTGTTTATCTGTTCTCTTATGCG  350

seq1  ACACCAAGATTATTCATTTTTGTTTGCTTCAAACAAGGTGGAAATGACCA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAAGATTATTCATTTTTGTTTGCTTCAAACAAGGTGGAAATGACCA  400

seq1  AACTTACATACTAGTTTCTTCAATCACAAGAAATAATGCCATAAGATGTG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTACATACTAGTTTCTTCAATCACAAGAAATAATGCCATAAGATGTG  450

seq1  TCTGTCTATGGCGGTTTTCTCAAAGGTGAGGCACTCAGTACTGACTCCAA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTATGGCGGTTTTCTCAAAGGTGAGGCACTCAGTACTGACTCCAA  500

seq1  GAAGACCAGAGAGGGAAAACCTGCATGTCTAACACACCTCCTCTATAAAA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCAGAGAGGGAAAACCTGCATGTCTAACACACCTCCTCTATAAAA  550

seq1  AGCCTCTCATCCTTTACCAGGAAGAGGTATAGATCAAAACTTAAATCTCA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTCATCCTTTACCAGGAAGAGGTATAGATCAAAACTTAAATCTCA  600

seq1  TTTCTCTGAGTCATGAGATCCTAGCTGATTTAATTATTACATGTGGGAAC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGAGTCATGAGATCCTAGCTGATTTAATTATTACATGTGGGAAC  650

seq1  ACTGAGGTAATCAGGCTCTAACACAGCTCTCAATCAAACGCTAAATGGCT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGTAATCAGGCTCTAACACAGCTCTCAATCAAACGCTAAATGGCT  700

seq1  TGGCCTGCTTCCAATTTCTTTCAGCTTATGCCCCACTTGCAAACCACACT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGCTTCCAATTTCTTTCAGCTTATGCCCCACTTGCAAACCACACT  750

seq1  ATATCAATATTCATGAAATGTCCCTGTTAACTCATGATTTGCTCAAAGTC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAATATTCATGAAATGTCCCTGTTAACTCATGATTTGCTCAAAGTC  800

seq1  CTCCATAGTTTGCTCTGACCACTTCCTTAGGCTTGCTCCCAAGGTGCAGA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATAGTTTGCTCTGACCACTTCCTTAGGCTTGCTCCCAAGGTGCAGA  850

seq1  GATCTCTGGATGAAGGGGTTTTCCTCTGACGATTCTAAATTGTCCTCTGT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTGGATGAAGGGGTTTTCCTCTGACGATTCTAAATTGTCCTCTGT  900

seq1  CCAGCCACATAACATGAACCTTCAAGCACTGCGGTGTTTCATTCACTGTT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCACATAACATGAACCTTCAAGCACTGCGGTGTTTCATTCACTGTT  950

seq1  TCTATATGGCTCCAGTCTGAAATGATTTTTCCATCGCTTTCCCTTGTCAA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATGGCTCCAGTCTGAAATGATTTTTCCATCGCTTTCCCTTGTCAA  1000

seq1  AACTATACACAACATTGAATTC  1011
      ||||||||||||||||||||||
seq2  AACTATACACAACATTGAATTC  1022