BAC Information

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BAC

Clone NameB6Ng01-172E13
Chromosome18 (Build37)
Map Location 73,656,051 - 73,806,380
singlet/doubletdoublet
Overlap geneRkhd2, Smad4
Upstream geneLOC100043411, LOC100042955
Downstream geneElac1, Me2, Mro, Mapk4, 2810433K01Rik, Cxxc1, EG435570, Mbd1, Ccdc11, LOC628298, LOC668124, LOC668126, Myo5b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172E13.bB6Ng01-172E13.g
ACCGA000942GA000943
length1,0781,046
definitionB6Ng01-172E13.b B6Ng01-172E13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,656,051 - 73,657,126)(73,805,339 - 73,806,380)
sequence
gaattctcaacccagaaacacacagagagttgtatctaagactcctgaac
ccaacctgagcctctcaaagcttcctgtcccatgtcttcctcattattct
catcattgacttctgccaggagagttgttattctcactatgccactgggt
cagtcaggggacttacttttttatctcaatgtagcttttatttctgagat
tataatataattacagtatttctctcttccctttcttctatccaaaccct
cccatatatccctctttgttctctttcaaatttatagtctctttttacac
taattgttatagggtgtatatatatatatatatatatatatatatatata
tatatatagcgctctcatgaattagtgtcatcataaaaagaaataagaga
ccctggttactccttttctataaaaaagataagagcttcccacaagaacc
tgactgttggcatcctaagctgactctcatttaacctatcatgcaatata
atggcagaatatatatattctaaatgtaacatactctgtctgtgtaatgt
ttctcatgtgtatgtactcagggatggccattaggtattggataaccaac
tggtgtgctcttccctgaaaaagcccattcctaaagctctcagcaatcct
tggttgcctgtagttcttcatagggttggggtccccatgaccttccccca
ttcatgttaacatgcctgctgttattgtcctccttcagttcacacttaaa
cagaccccttggtaagactttttgggtgtaacttctgacatcactagaag
acatgatcctacagaaaattccattatttttctagctcttgcaatctttc
ttcgccctaagaacctttagtccgagatgtgcaatgtgaaataagatttg
acccaaaagattctaggaagcattggtgactattaagcccccgcaaacac
tgattgttcacttaaattctattccatgagtggtaaagcagcaagaaaaa
aatgtgagacatgactttactttaccaaaatgagttgtcacaaaatatag
aaagctggcatggtggcccaccaggagg
gaattcccctgactggctttaactacagagatatcctgtctctgtcttct
gagtactggaattaaaggtatgtggcaccatgcccagttgctcactttga
gacagtcctaccgtatagctgtgtgtagagagcaggctagctttgaactt
acaaagctctgcctgttgctgtctcccaagtgctatgaataacagtgcgt
cccaccgtgcctggcaaggcttctttctttctttacaaatatcttatatt
gagctactgatattttctaatttgatgattgtttttggcagtggtgagta
aagagtgtttttcagttacttgctctcaggtaggttctcaccagggaagt
gaaatgtatgcaaataatgggagcccgtacaagtgcctacactgagaagt
actcctagacagacagacatttccctgttgagttgaaacagggtaaacaa
gtgtattcatggttttgggttttgagatagggtttcctgtagcccacata
gccctgttgcctggccttgcatttgtgacagagctgtggatgaccttgaa
ctccccacccttctgcttctacgccttggaccctggcattacaggcaggc
tccaccacacctgcttttaaagacatttttaaagaaaaatttctttcctt
ttttttttctttatgcggctttattattttcttgtatgtgtgtgtaagaa
tgcctccacatatgtagtgcattgcagagtcagaagagggcatcagatcc
cctggaactggagttaccagtggttgtgatgtgccacatgggtgctctgt
gatagcaacatgtgctcttagccgtggaaccaactctctagtcactttga
tctgttagtcctgggaattctggtttttcacagcattatgaggccatttg
ccattttatatgtcacacaaatcattttaagtattcagtacttttagtgt
ttacaggattgtacacccatcttccaaaccattttagaatattcttttat
tctagaaagaagaacctattatctttttaggtaatgcctattatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_73656051_73657126
seq2: B6Ng01-172E13.b_42_1119

seq1  GAATTCTCAACCCAGAAACACACAGAGAGTTGTATCTAAGACTCCTGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAACCCAGAAACACACAGAGAGTTGTATCTAAGACTCCTGAAC  50

seq1  CCAACCTGAGCCTCTCAAAGCTTCCTGTCCCATGTCTTCCTCATTATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCTGAGCCTCTCAAAGCTTCCTGTCCCATGTCTTCCTCATTATTCT  100

seq1  CATCATTGACTTCTGCCAGGAGAGTTGTTATTCTCACTATGCCACTGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTGACTTCTGCCAGGAGAGTTGTTATTCTCACTATGCCACTGGGT  150

seq1  CAGTCAGGGGACTTACTTTTTTATCTCAATGTAGCTTTTATTTCTGAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGGGGACTTACTTTTTTATCTCAATGTAGCTTTTATTTCTGAGAT  200

seq1  TATAATATAATTACAGTATTTCTCTCTTCCCTTTCTTCTATCCAAACCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATATAATTACAGTATTTCTCTCTTCCCTTTCTTCTATCCAAACCCT  250

seq1  CCCATATATCCCTCTTTGTTCTCTTTCAAATTTATAGTCTCTTTTTACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATATCCCTCTTTGTTCTCTTTCAAATTTATAGTCTCTTTTTACAC  300

seq1  TAATTGTTATAGGGTGTATATATATATATATATATATATATATATATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTTATAGGGTGTATATATATATATATATATATATATATATATATA  350

seq1  TATATATAGCGCTCTCATGAATTAGTGTCATCATAAGAAGAAATAAGAGA  400
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TATATATAGCGCTCTCATGAATTAGTGTCATCATAAAAAGAAATAAGAGA  400

seq1  CCCTGGTTACTCCTTTTCTATAAAAAAGATAAGAGCTTCCCACAAGAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTTACTCCTTTTCTATAAAAAAGATAAGAGCTTCCCACAAGAACC  450

seq1  TGACTGTTGGCATCCTAAGCTGACTCTCATTTAACCTATCATGCAATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTTGGCATCCTAAGCTGACTCTCATTTAACCTATCATGCAATATA  500

seq1  ATGGCAGAATATATATATTCTAAATGTAACATACTCTGTCTGTGTAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGAATATATATATTCTAAATGTAACATACTCTGTCTGTGTAATGT  550

seq1  TTCTCATGTGTATGTACTCAGGGATGGCCATTAGGTATTGGATAACCAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATGTGTATGTACTCAGGGATGGCCATTAGGTATTGGATAACCAAC  600

seq1  TGGTGTGCTCTTCCCTGAAAAAGCCCATTCCTAAAGCTCTCAGCAATCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGCTCTTCCCTGAAAAAGCCCATTCCTAAAGCTCTCAGCAATCCT  650

seq1  TGGTTGCCTGTAGTTCTTCATAGGGTT-GGGTCCCCATGACCTTCCCCCA  699
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGGTTGCCTGTAGTTCTTCATAGGGTTGGGGTCCCCATGACCTTCCCCCA  700

seq1  TTCATGTTAACATGCCTGCTGTTATTGTCCTCCTTCAGTTCACACTTAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTTAACATGCCTGCTGTTATTGTCCTCCTTCAGTTCACACTTAAA  750

seq1  CAGACCCCTTGGTAAGACTTTTTGGGTGTAACTTCTGACATCACTAGAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCCCTTGGTAAGACTTTTTGGGTGTAACTTCTGACATCACTAGAAG  800

seq1  ACATGATCCTACAGAAAATTCCATTA-TTTTCTAGCTCTTGCAATCTTTC  848
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACATGATCCTACAGAAAATTCCATTATTTTTCTAGCTCTTGCAATCTTTC  850

seq1  TTCGCCCTAAGAA-CTTTAGTCCGAGATGTGCAAATGTGAAATAAGATTT  897
      ||||||||||||| |||||||||||||||||| |||||||||||||||||
seq2  TTCGCCCTAAGAACCTTTAGTCCGAGATGTGC-AATGTGAAATAAGATTT  899

seq1  GACACAAAAGATTCTAAGGAAGCATTGGTGACTATTAAGCCCCCGCAAAC  947
      ||| ||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GACCCAAAAGATTCT-AGGAAGCATTGGTGACTATTAAGCCCCCGCAAAC  948

seq1  ACTGATTG-TCACTTAAA-TCTATTCCATGAGTGGTAAAGCAGCAAGAAA  995
      |||||||| ||||||||| |||||||||||||||||||||||||||||||
seq2  ACTGATTGTTCACTTAAATTCTATTCCATGAGTGGTAAAGCAGCAAGAAA  998

seq1  AAAATGTGAGACATGAC-TTACTTTACCAAAATGAGTTGTACACAAAATA  1044
      ||||||||||||||||| |||||||||||||||||||||| |||||||||
seq2  AAAATGTGAGACATGACTTTACTTTACCAAAATGAGTTGT-CACAAAATA  1047

seq1  TAGAAAGCTGGGCATGGTGGCACACCAGGAGG  1076
      ||||||||| ||||||||||| ||||||||||
seq2  TAGAAAGCT-GGCATGGTGGCCCACCAGGAGG  1078

seq1: chr18_73805339_73806380
seq2: B6Ng01-172E13.g_67_1112 (reverse)

seq1  GTATAATTAGCATTACCTAAAAAGAT-ATAGG-TCTTCTTTCTAGAATAA  48
      |||||||  ||||||||||||||||| ||||| |||||||||||||||||
seq2  GTATAATAGGCATTACCTAAAAAGATAATAGGTTCTTCTTTCTAGAATAA  50

seq1  AGAAATATTCTAAAATGGTTTGG-AGATGGTTGTACAATTCTGTAAACAC  97
      |  |||||||||||||||||||| |||||| |||||||| ||||||||||
seq2  AAGAATATTCTAAAATGGTTTGGAAGATGGGTGTACAATCCTGTAAACAC  100

seq1  TAAAAGTACTGAATACTTAAAATGATTTGTGTGACATATAAATTG--CAA  145
      |||||||||||||||||||||||||||||||||||||||||| ||   ||
seq2  TAAAAGTACTGAATACTTAAAATGATTTGTGTGACATATAAAATGGCAAA  150

seq1  TTGCCTCAATAATGCTGTTGAAAACCAGAATTCCCAGGACTAACAGATCA  195
      | ||||| ||||||||||  ||||||||||||||||||||||||||||||
seq2  TGGCCTC-ATAATGCTGTGAAAAACCAGAATTCCCAGGACTAACAGATCA  199

seq1  AAGTGACTAGAGAGTTGGTTCCACGGCTAAGAGCACATGTTGCTATCACA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACTAGAGAGTTGGTTCCACGGCTAAGAGCACATGTTGCTATCACA  249

seq1  GAGCACCCATGTGGCACATCACAACCACTGGTAACTCCAGTTCCAGGGGA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACCCATGTGGCACATCACAACCACTGGTAACTCCAGTTCCAGGGGA  299

seq1  TCTGATGCCCTCTTCTGACTCTGCAATGCACTACATATGTGGAGGCATTC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGCCCTCTTCTGACTCTGCAATGCACTACATATGTGGAGGCATTC  349

seq1  TTACACACACATACAAGAAAATAATAAAGCCGCATAAAGAAAAAAAAAAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACACACATACAAGAAAATAATAAAGCCGCATAAAGAAAAAAAAAAG  399

seq1  GAAAGAAATTTTTCTTTAAAAATGTCTTTAAAAGCAGGTGTGGTGGAGCC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAATTTTTCTTTAAAAATGTCTTTAAAAGCAGGTGTGGTGGAGCC  449

seq1  TGCCTGTAATGCCAGGGTCCAAGGCGTAGAAGCAGAAGGGTGGGGAGTTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTAATGCCAGGGTCCAAGGCGTAGAAGCAGAAGGGTGGGGAGTTC  499

seq1  AAGGTCATCCACAGCTCTGTCACAAATGCAAGGCCAGGCAACAGGGCTAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCATCCACAGCTCTGTCACAAATGCAAGGCCAGGCAACAGGGCTAT  549

seq1  GTGGGCTACAGGAAACCCTATCTCAAAACCCAAAACCATGAATACACTTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTACAGGAAACCCTATCTCAAAACCCAAAACCATGAATACACTTG  599

seq1  TTTACCCTGTTTCAACTCAACAGGGAAATGTCTGTCTGTCTAGGAGTACT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCTGTTTCAACTCAACAGGGAAATGTCTGTCTGTCTAGGAGTACT  649

seq1  TCTCAGTGTAGGCACTTGTACGGGCTCCCATTATTTGCATACATTTCACT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTGTAGGCACTTGTACGGGCTCCCATTATTTGCATACATTTCACT  699

seq1  TCCCTGGTGAGAACCTACCTGAGAGCAAGTAACTGAAAAACACTCTTTAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGTGAGAACCTACCTGAGAGCAAGTAACTGAAAAACACTCTTTAC  749

seq1  TCACCACTGCCAAAAACAATCATCAAATTAGAAAATATCAGTAGCTCAAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACTGCCAAAAACAATCATCAAATTAGAAAATATCAGTAGCTCAAT  799

seq1  ATAAGATATTTGTAAAGAAAGAAAGAAGCCTTGCCAGGCACGGTGGGACG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATATTTGTAAAGAAAGAAAGAAGCCTTGCCAGGCACGGTGGGACG  849

seq1  CACTGTTATTCATAGCACTTGGGAGACAGCAACAGGCAGAGCTTTGTAAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTATTCATAGCACTTGGGAGACAGCAACAGGCAGAGCTTTGTAAG  899

seq1  TTCAAAGCTAGCCTGCTCTCTACACACAGCTATACGGTAGGACTGTCTCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGCTAGCCTGCTCTCTACACACAGCTATACGGTAGGACTGTCTCA  949

seq1  AAGTGAGCAACTGGGCATGGTGCCACATACCTTTAATTCCAGTACTCAGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGCAACTGGGCATGGTGCCACATACCTTTAATTCCAGTACTCAGA  999

seq1  AGACAGAGACAGGATATCTCTGTAGTTAAAGCCAGTCAGGGGAATTC  1042
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGACAGGATATCTCTGTAGTTAAAGCCAGTCAGGGGAATTC  1046