BAC Information

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BAC

Clone NameB6Ng01-173E16
Chromosome18 (Build37)4 (Build37)
Map Location 82,426,326 - 82,426,559118,684,760 - 118,685,903
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039458, LOC100040871
Downstream geneB020010K11Rik, Galr1, Mbp, EG637748, Zfp236, LOC100039563, Zfp516, LOC100041001
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173E16.bB6Ng01-173E16.g
ACCGA001674GA001675
length2451,157
definitionB6Ng01-173E16.b B6Ng01-173E16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(82,426,326 - 82,426,559)(118,684,760 - 118,685,903)
sequence
ccctatactggggcacagaaccttcacaggaccaaaaaacctctcctccc
attgatgaccaactaggccatcctctgctacatatgcagctagagacacg
agtccctccttgtgttttctttgattggtgatttagtcccagggagctct
gtggctactggttagttcatattgatgttcctcctatggggctgcaaacc
ccttcagctccttgggtactttttctctggctccttcattgggga

gaattcagaccaccattgtcacatagacacatgtgtccgtagcacacacc
acccattttagcggaagactcacacatagcctgtgggcacacatccacca
cacccacactcagtcccatatactttacttaccttcgtgggtctgcacat
gcagcaccacatacgtgtactagcatgtacagacatgaacatagatgtgg
atgcattcgatcacacatgagacccatttaggtaaattcacttgcacata
atttctgcagtcacacataggcacacacccatgttcccacactcatgcaa
tcacatatcttctctacctcctactgcagagggggaggctgaccctaatc
agacacagctaaggctagaccctggtagaagctaaaccctgaagtgtttg
ggttttcaggggagggggctttctttctttcttcttcctttcttcttctt
cctttcttcttcttcttcttcttcttcttcttcttcttcttcttcttctt
cttcttcttcttcttcttcttctggtttttccaaacagggtttctctgtg
tagccctggctgacctggaactcactttgtagaccaggctggcctcgaac
tcagaaatcctcctgcctctgcctcccgagtgctgggattaaaggcgtgc
gccaccatgcctggcttctttcttcttttttaaagcagagtctttctaag
gagccctagttgtcctagaagttgctatgcaagccaagtaggcctccaac
tcacagagatctccctgcctctgcctcccaaatgctgagattaaagatat
gcaccaccatgccctgacttagacttttgaggttttaaggggaaaacctt
agctccagcatagcctttttatatgggtttattgtcatcagcagccctgg
aaaatgtgatccaagaccagttcctcacaggctcaggcactcacacccac
atcatcttgggccaagcaacagtagtcccaaaagtgtcaagtcaataagc
ctggggtagccggccaaggctggccagcaccgcctggtcttgtcttgttg
ctgttttgtccttctgccagaaacctttgcttatgggctccttttttccc
tctgaagccagacctttggagtctcataggcgggccttccagtgctctta
aaagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_82426326_82426559
seq2: B6Ng01-173E16.b_45_286 (reverse)

seq1  TCCCCAATGAAGGAGCTAGAG--AAAGTACCCAAGGAGCTGAAGGGGTTT  48
      |||||||||||||||| ||||  |||||||||||||||||||||||||||
seq2  TCCCCAATGAAGGAGCCAGAGAAAAAGTACCCAAGGAGCTGAAGGGGTTT  50

seq1  GCAGCCCCATAGAAAGAACAACAATATGAACTAACCAGTACACCCAGAGT  98
      |||||||||||| | ||||| |||||||||||||||||||  | ||||| 
seq2  GCAGCCCCATAGGAGGAACATCAATATGAACTAACCAGTAGCCACAGAGC  100

seq1  TCCCTGGGACTAAATCACCAACCAAAGAAAACACATGGTGGGACTCATGG  148
      ||||||||||||||||||||| ||||||||||||| || ||||||| || 
seq2  TCCCTGGGACTAAATCACCAATCAAAGAAAACACAAGGAGGGACTCGTGT  150

seq1  TTCTAACTGCATACGTAGCAGAGGA-----TAGTTGGTCATCAATGGGAG  193
       |||| ||||||| |||||||||||     ||||||||||||||||||||
seq2  CTCTAGCTGCATATGTAGCAGAGGATGGCCTAGTTGGTCATCAATGGGAG  200

seq1  GAGAGG-CCCTTGGTCCTGTGAAGGTTCTATGCCCCAGTATA  234
      ||||||    ||||||||||||||||||| ||||||||||||
seq2  GAGAGGTTTTTTGGTCCTGTGAAGGTTCTGTGCCCCAGTATA  242


seq1: chr4_118684760_118685903
seq2: B6Ng01-173E16.g_67_1223

seq1  GAATTCAGACCACCATTGTCACATAGACACATGTGTCCGTAGCACACACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACCACCATTGTCACATAGACACATGTGTCCGTAGCACACACC  50

seq1  ACCCATTTTAGCGGAAGACTCACACATAGCCTGTGGGCACACATCCACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATTTTAGCGGAAGACTCACACATAGCCTGTGGGCACACATCCACCA  100

seq1  CACCCACACTCAGTCCCATATACTTTACTTACCTTCGTGGGTCTGCACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACACTCAGTCCCATATACTTTACTTACCTTCGTGGGTCTGCACAT  150

seq1  GCAGCACCACATACGTGTACTAGCATGTACAGACATGAACATAGATGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCACCACATACGTGTACTAGCATGTACAGACATGAACATAGATGTGG  200

seq1  ATGCATTCGATCACACATGAGACCCATTTAGGTAAATTCACTTGCACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTCGATCACACATGAGACCCATTTAGGTAAATTCACTTGCACATA  250

seq1  ATTTCTGCAGTCACACATAGGCACACACCCATGTTCCCACACTCATGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGCAGTCACACATAGGCACACACCCATGTTCCCACACTCATGCAA  300

seq1  TCACATATCTTCTCTACCTCCTACTGCAGAGGGGGAGGCTGACCCTAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATATCTTCTCTACCTCCTACTGCAGAGGGGGAGGCTGACCCTAATC  350

seq1  AGACACAGCTAAGGCTAGACCCTGGTAGAAGCTAAACCCTGAAGTGTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAGCTAAGGCTAGACCCTGGTAGAAGCTAAACCCTGAAGTGTTTG  400

seq1  GGTTTTCAGGGGAGGGGGCTTTCTTTCTTTCTTCTTCCTTTCTTCTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCAGGGGAGGGGGCTTTCTTTCTTTCTTCTTCCTTTCTTCTTCTT  450

seq1  CCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT  500

seq1  CTTCTTCTTCTTCTTCTTCTTCTGGTTTTTCCAAACAGGGTTTCTCTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTTCTTCTTCTTCTTCTGGTTTTTCCAAACAGGGTTTCTCTGTG  550

seq1  TAGCCCTGGCTGACCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTGGCTGACCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAAC  600

seq1  TCAGAAATCCTCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATCCTCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGC  650

seq1  GCCACCATGCCTGGCTTCTTTCTTCTTTTTTAAAGCAGAGTCTTTCTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCATGCCTGGCTTCTTTCTTCTTTTTTAAAGCAGAGTCTTTCTAAG  700

seq1  GAGCCCTAGTTGTCCTAGAAGTTGCTATGCAAGCCAAGTAGGCCTCCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTAGTTGTCCTAGAAGTTGCTATGCAAGCCAAGTAGGCCTCCAAC  750

seq1  TCACAGAGATCTCCCTGCCTCTGCCTCCCAAATGCTGAGATTAAAGATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAGATCTCCCTGCCTCTGCCTCCCAAATGCTGAGATTAAAGATAT  800

seq1  GCACCACCATG-CCTGACTTAGACTTTTGAGGTTTTAAGGGGAAAACCTT  849
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GCACCACCATGCCCTGACTTAGACTTTTGAGGTTTTAAGGGGAAAACCTT  850

seq1  AGCTCCAGCATAGCCTTTTTATATGGGTTTATTGTCATCAGCAGCCCTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAGCATAGCCTTTTTATATGGGTTTATTGTCATCAGCAGCCCTGG  900

seq1  AAAATGTGATCCAAGACCAGTTCCTCACAGGCCCAGGCAACTCACA-CCA  948
      |||||||||||||||||||||||||||||||| ||||| ||||||| |||
seq2  AAAATGTGATCCAAGACCAGTTCCTCACAGGCTCAGGC-ACTCACACCCA  949

seq1  CATCATCTTGGCCAAGGCAACAGGTAGTCCCAAAAAGTGCCAAGTC-ATA  997
      ||||||||||| | | |||||| |||||||| ||||||| |||||| |||
seq2  CATCATCTTGGGCCAAGCAACA-GTAGTCCC-AAAAGTGTCAAGTCAATA  997

seq1  AGCCTGGGGTAGCCGGGCCAGGCTGG-CAGCA-CGGCTGGTCTTGTCTTG  1045
      |||||||||||||||| | ||||||| ||||| || ||||||||||||||
seq2  AGCCTGGGGTAGCCGGCCAAGGCTGGCCAGCACCGCCTGGTCTTGTCTTG  1047

seq1  TTTGCTG-TTTGT-CTTCTGCCCAGAACC-TTGC-TATGGGCTC---TTT  1088
       |||||| ||||| ||||||||   |||| |||| |||||||||   |||
seq2  -TTGCTGTTTTGTCCTTCTGCCAGAAACCTTTGCTTATGGGCTCCTTTTT  1096

seq1  TCCCTCACTG-AGGCAGACCTT--GAG--TCATAAGGCGGCTTTCCCGTG  1133
      |||||  ||| || ||||||||  |||  ||||| |  ||| |||| |||
seq2  TCCCT--CTGAAGCCAGACCTTTGGAGTCTCATAGGCGGGCCTTCCAGTG  1144

seq1  CTCT--AAAGAAA  1144
      ||||  |||||||
seq2  CTCTTAAAAGAAA  1157


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