BAC Information

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BAC

Clone NameB6Ng01-173H11
Chromosome18 (Build37)
Map Location 40,471,517 - 40,612,831
singlet/doubletdoublet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416, LOC677182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173H11.bB6Ng01-173H11.g
ACCGA001804GA001805
length1,1651,205
definitionB6Ng01-173H11.b B6Ng01-173H11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,611,671 - 40,612,831)(40,471,517 - 40,472,698)
sequence
gaattcactgggactggatattgtacagctgggatgctttaatgacggaa
ctgaaatcctgagatgtacccaccctggatgcacaattcaccatggagag
ccctttccaatcaactgagagaaaaagtcaatagcttttcagctctgcag
cagagaagagattaaaaagtatttgctttgctcttagccaactcttcccg
tctatccaatagacgtatccatttcatcatgttctgtatatatacatttc
caggcacatagtcactcagtggcagaagattgccatggggacctcttatg
agaacaacatttaaaatcacaaacggtgacaccacatagctcagctttct
actaccagtaactgcttattattattaggctgtactaattatacaaagta
atgtgtttcatcatggcaattttataatactaatatattttgattacatt
gatccttctccaagggatttttttcaaaacatttttaaacctctaccaat
attaaaagaaaaagagacagcatgtaaaagttttacaaaagaaacctgag
tccctttaagatgttggttaacactggcattctgaaagcccacacagcaa
gtggcaatactgattctgagggtccactttctacagattatctctccacc
tctacccaccccacatactcactcatgaatagacaacaacagcttttagt
caagaagcaatttccttctctcaaggtgactagaaaagtaacacttgaac
tccactctggaacttctggtggctacattttatattttgagggaaaaaaa
atattctgtagtgagagaatggcatgaagcagatgtctaggaaaaacatt
gaaatttaacatggaaaaatgctaattggtctgttccacccattgctagt
aaagtaagagtaacgctcaaaatagctcagaaaagttgaactcaaagcga
aagcagatgttagggaaacacaccgaaagctctgtgaccttgatcccgta
ttatgttcctggaggatagtaaaactgaatgtagaaataaataacaaata
atatgtatttcccgttcctgattatggttttattatcatgatttatagat
ataaggatattctatcacttaaggtcatcagtatctacaaaggagaatta
ggccatgtttcttaa
gaattccattgtcgttaggaaatacgtgggctaactctcactttgttaac
tggaaaacaccctccttgcatttgagaattaagtgacaactaagtcaggc
cttctaaaccattcaaaagtatgttatattgaactgactttctctagtgc
tttatggtcattagtcagcaattcctcaagcatatttgcaccactcctgg
tacctaacattccagtctctcttctatggctttgactacttaaattattt
catatgagtaggcccgtgcagtatttgttctctggtttgcttctttcagt
gagcatggtgcctctaaacttttgtgtttaatgtgatttcgtgtggagat
gttctttcttttgaaaaggtgaacaggactgtgcccgtgtatatgccagg
ctttccttatttgtttatgtggacctgaacatttacattagttccacacc
ttggctctttctaattgcgtggcagagaatttaagagtacaaatactgct
gtgagattataggattgaaccaagttttgattttggtaaatgtcctgagc
taggcttgctggttcttctttttattctcagtgagcctttttgtgcttgg
cacggcagtgttgttctgttgctttcttgccaacagggtgccaagattcg
ttgttgttgttaactttttctcttttaaattgtgtgtttgaatgtgtgtg
catgtgtgtgtctctttacatgttcatatgtttgaatccaagccacagca
cacatgtagagactagaggagagttgtatgtgccagtctttgcctcccat
cttattagaggcagggtctctcttcctctaaattagaggcttgccaagct
tcttagaattctcctgtctcactttctcatctcccctatagtattgggga
ttccagatatgttctactgaatctggcattttacatggaattttagggaa
ttagaccttaagtctcctagcttttgtaagcacctttctcccactgaagc
cgtctacttcatcccaatttttatctttttgataatgtttgccagggcca
agtggtgaactggcatgctatgtagtctttctactgccattatttgaaca
tttccttgccatgcacctatatcagtcctacttgcccagttctttgttgc
gggcacgtctatattgagacgtaacccacttgctccatgattcctgtatc
ctgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_40611671_40612831
seq2: B6Ng01-173H11.b_43_1207 (reverse)

seq1  TTAAGAAACAT-GCTTAAATCT-CTTTGTAGATACTGATGA-CTTTAGTG  47
      ||||||||||| || ||| ||| |||||||||||||||||| ||| ||||
seq2  TTAAGAAACATGGCCTAATTCTCCTTTGTAGATACTGATGACCTTAAGTG  50

seq1  ATAGAATTATCTTATATCTATAAATCATTGATAATAAAAACATAATCAGG  97
      |||||||   ||||||||||||||||| ||||||||||| ||||||||||
seq2  ATAGAATATCCTTATATCTATAAATCA-TGATAATAAAACCATAATCAGG  99

seq1  AACGGG-AATACATATAATTTGTTATTTATTTCTACACTCAGTTTTTACT  146
      |||||| ||||||||| |||||||||||||||||||| |||| |||||||
seq2  AACGGGAAATACATATTATTTGTTATTTATTTCTACATTCAG-TTTTACT  148

seq1  ATCCTCCAGGAACAT-ATACGGGATC-AGGTCACAGAGCTTTCGGTTGTG  194
      ||||||||||||||| |||||||||| |||||||||||||||||| ||||
seq2  ATCCTCCAGGAACATAATACGGGATCAAGGTCACAGAGCTTTCGG-TGTG  197

seq1  TTTCCCTTACATCTGCTTTCGCTTTGAGTTCAAC-TTTCTGAGCTATTTT  243
      ||||||| |||||||||||||||||||||||||| |||||||||||||||
seq2  TTTCCCTAACATCTGCTTTCGCTTTGAGTTCAACTTTTCTGAGCTATTTT  247

seq1  GAGCGTTACTCTTACTTTACTAGCAATGGGTGGAACAGACCAATTAGCAT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGTTACTCTTACTTTACTAGCAATGGGTGGAACAGACCAATTAGCAT  297

seq1  TTTTCCATGTTAAATTTCAATGTTTTTCCTAGACATCTGCTTCATGCCAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCATGTTAAATTTCAATGTTTTTCCTAGACATCTGCTTCATGCCAT  347

seq1  TCTCTCACTACAGAATATTTTTTTTCCCTCAAAATATAAAATGTAGCCAC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCACTACAGAATATTTTTTTTCCCTCAAAATATAAAATGTAGCCAC  397

seq1  CAGAAGTTCCAGAGTGGAGTTCAAGTGTTACTTTTCTAGTCACCTTGAGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTTCCAGAGTGGAGTTCAAGTGTTACTTTTCTAGTCACCTTGAGA  447

seq1  GAAGGAAATTGCTTCTTGACTAAAAGCTGTTGTTGTCTATTCATGAGTGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAATTGCTTCTTGACTAAAAGCTGTTGTTGTCTATTCATGAGTGA  497

seq1  GTATGTGGGGTGGGTAGAGGTGGAGAGATAATCTGTAGAAAGTGGACCCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGGGGTGGGTAGAGGTGGAGAGATAATCTGTAGAAAGTGGACCCT  547

seq1  CAGAATCAGTATTGCCACTTGCTGTGTGGGCTTTCAGAATGCCAGTGTTA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCAGTATTGCCACTTGCTGTGTGGGCTTTCAGAATGCCAGTGTTA  597

seq1  ACCAACATCTTAAAGGGACTCAGGTTTCTTTTGTAAAACTTTTACATGCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACATCTTAAAGGGACTCAGGTTTCTTTTGTAAAACTTTTACATGCT  647

seq1  GTCTCTTTTTCTTTTAATATTGGTAGAGGTTTAAAAATGTTTTGAAAAAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTTTTCTTTTAATATTGGTAGAGGTTTAAAAATGTTTTGAAAAAA  697

seq1  ATCCCTTGGAGAAGGATCAATGTAATCAAAATATATTAGTATTATAAAAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTGGAGAAGGATCAATGTAATCAAAATATATTAGTATTATAAAAT  747

seq1  TGCCATGATGAAACACATTACTTTGTATAATTAGTACAGCCTAATAATAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGATGAAACACATTACTTTGTATAATTAGTACAGCCTAATAATAA  797

seq1  TAAGCAGTTACTGGTAGTAGAAAGCTGAGCTATGTGGTGTCACCGTTTGT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGTTACTGGTAGTAGAAAGCTGAGCTATGTGGTGTCACCGTTTGT  847

seq1  GATTTTAAATGTTGTTCTCATAAGAGGTCCCCATGGCAATCTTCTGCCAC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTAAATGTTGTTCTCATAAGAGGTCCCCATGGCAATCTTCTGCCAC  897

seq1  TGAGTGACTATGTGCCTGGAAATGTATATATACAGAACATGATGAAATGG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGACTATGTGCCTGGAAATGTATATATACAGAACATGATGAAATGG  947

seq1  ATACGTCTATTGGATAGACGGGAAGAGTTGGCTAAGAGCAAAGCAAATAC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGTCTATTGGATAGACGGGAAGAGTTGGCTAAGAGCAAAGCAAATAC  997

seq1  TTTTTAATCTCTTCTCTGCTGCAGAGCTGAAAAGCTATTGACTTTTTCTC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATCTCTTCTCTGCTGCAGAGCTGAAAAGCTATTGACTTTTTCTC  1047

seq1  TCAGTTGATTGGAAAGGGCTCTCCATGGTGAATTGTGCATCCAGGGTGGG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGATTGGAAAGGGCTCTCCATGGTGAATTGTGCATCCAGGGTGGG  1097

seq1  TACATCTCAGGATTTCAGTTCCGTCATTAAAGCATCCCAGCTGTACAATA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCTCAGGATTTCAGTTCCGTCATTAAAGCATCCCAGCTGTACAATA  1147

seq1  TCCAGTCCCAGTGAATTC  1161
      ||||||||||||||||||
seq2  TCCAGTCCCAGTGAATTC  1165

seq1: chr18_40471517_40472698
seq2: B6Ng01-173H11.g_69_1273

seq1  GAATTCCATTGTCGTTAGGAAATACGTGGGCTAACTCTCACTTTGTTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTGTCGTTAGGAAATACGTGGGCTAACTCTCACTTTGTTAAC  50

seq1  TGGAAAACACCCTCCTTGCATTTGAGAATTAAGTGACAACTAAGTCAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAACACCCTCCTTGCATTTGAGAATTAAGTGACAACTAAGTCAGGC  100

seq1  CTTCTAAACCATTCAAAAGTATGTTATATTGAACTGACTTTCTCTAGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAAACCATTCAAAAGTATGTTATATTGAACTGACTTTCTCTAGTGC  150

seq1  TTTATGGTCATTAGTCAGCAATTCCTCAAGCATATTTGCACCACTCCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGTCATTAGTCAGCAATTCCTCAAGCATATTTGCACCACTCCTGG  200

seq1  TACCTAACATTCCAGTCTCTCTTCTATGGCTTTGACTACTTAAATTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAACATTCCAGTCTCTCTTCTATGGCTTTGACTACTTAAATTATTT  250

seq1  CATATGAGTAGGCCCGTGCAGTATTTGTTCTCTGGTTTGCTTCTTTCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGAGTAGGCCCGTGCAGTATTTGTTCTCTGGTTTGCTTCTTTCAGT  300

seq1  GAGCATGGTGCCTCTAAACTTTTGTGTTTAATGTGATTTCGTGTGGAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATGGTGCCTCTAAACTTTTGTGTTTAATGTGATTTCGTGTGGAGAT  350

seq1  GTTCTTTCTTTTGAAAAGGTGAACAGGACTGTGCCCGTGTATATGCCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTCTTTTGAAAAGGTGAACAGGACTGTGCCCGTGTATATGCCAGG  400

seq1  CTTTCCTTATTTGTTTATGTGGACCTGAACATTTACATTAGTTCCACACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTATTTGTTTATGTGGACCTGAACATTTACATTAGTTCCACACC  450

seq1  TTGGCTCTTTCTAATTGCGTGGCAGAGAATTTAAGAGTACAAATACTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTCTTTCTAATTGCGTGGCAGAGAATTTAAGAGTACAAATACTGCT  500

seq1  GTGAGATTATAGGATTGAACCAAGTTTTGATTTTGGTAAATGTCCTGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATTATAGGATTGAACCAAGTTTTGATTTTGGTAAATGTCCTGAGC  550

seq1  TAGGCTTGCTGGTTCTTCTTTTTATTCTCAGTGAGCCTTTTTGTGCTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTTGCTGGTTCTTCTTTTTATTCTCAGTGAGCCTTTTTGTGCTTGG  600

seq1  CACGGCAGTGTTGTTCTGTTGCTTTCTTGCCAACAGGGTGCCAAGATTCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGCAGTGTTGTTCTGTTGCTTTCTTGCCAACAGGGTGCCAAGATTCG  650

seq1  TTGTTGTTGTTAACTTTTTCTCTTTTAAATTGTGTGTTTGAATGTGTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGTTAACTTTTTCTCTTTTAAATTGTGTGTTTGAATGTGTGTG  700

seq1  CATGTGTGTGTCTCTTTACATGTTCATATGTTTGAATCCAAGCCACAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTGTGTCTCTTTACATGTTCATATGTTTGAATCCAAGCCACAGCA  750

seq1  CACATGTAGAGACTAGAGGAGAGTTGTATGTGCCAGTCTTTGCCTCCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTAGAGACTAGAGGAGAGTTGTATGTGCCAGTCTTTGCCTCCCAT  800

seq1  CTTATTAGAGGCAGGGTCTCTCTTCCTCTAAATTAGAGGCTTG-CAAGCT  849
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTTATTAGAGGCAGGGTCTCTCTTCCTCTAAATTAGAGGCTTGCCAAGCT  850

seq1  TCTTAGAATTCTCCTGTCTCAC-TTCTCATCT-CCCTATAGTATT-GGGA  896
      |||||||||||||||||||||| ||||||||| |||||||||||| ||||
seq2  TCTTAGAATTCTCCTGTCTCACTTTCTCATCTCCCCTATAGTATTGGGGA  900

seq1  TTCCAGATATGTTCTACTGAATCTGGC-TTTTACATGG-ATTTTA-GGAA  943
      ||||||||||||||||||||||||||| |||||||||| |||||| ||||
seq2  TTCCAGATATGTTCTACTGAATCTGGCATTTTACATGGAATTTTAGGGAA  950

seq1  TTAGAACTTAGTTCTCCTAGCTTTTGTAAGCA-CTTTCT-CCACTG-AGC  990
      ||||| ||||  |||||||||||||||||||| |||||| |||||| |||
seq2  TTAGACCTTAAGTCTCCTAGCTTTTGTAAGCACCTTTCTCCCACTGAAGC  1000

seq1  CGTCT-CTTCATCCCAA-TTTTATCTTTTTGATAATGTTTG-CAGGGGCA  1037
      ||||| ||||||||||| ||||||||||||||||||||||| ||||| ||
seq2  CGTCTACTTCATCCCAATTTTTATCTTTTTGATAATGTTTGCCAGGGCCA  1050

seq1  AGT-GTGAACTGGAATGCTATGTAGTTCTTTC-ATTGCAAT--ATTGAAC  1083
      ||| ||||||||| ||||||||||| |||||| | ||| ||   ||||||
seq2  AGTGGTGAACTGGCATGCTATGTAG-TCTTTCTACTGCCATTATTTGAAC  1099

seq1  ATTT-CTTGCCATGAAC--TTATCAG--CCACTTGC---ATGTTTTATTT  1125
      |||| ||||||||| ||   ||||||  | ||||||    |  ||| || 
seq2  ATTTCCTTGCCATGCACCTATATCAGTCCTACTTGCCCAGTTCTTTGTTG  1149

seq1  GGTGGAC-TATCTATTGAAGACCTTAACCCACTTGTCTTCATGATTCCTG  1174
       | | || | | ||||| ||| | ||||||||||| || |||||||||||
seq2  CGGGCACGTCTATATTG-AGA-CGTAACCCACTTG-CTCCATGATTCCTG  1196

seq1  -ATCCTGAG  1182
       ||||||||
seq2  TATCCTGAG  1205