BAC Information

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BAC

Clone NameB6Ng01-173K08
Chromosome18 (Build37)
Map Location 54,796,962 - 54,902,739
singlet/doubletdoublet
Overlap genenone
Upstream geneCcdc100, Csnk1g3, EG433184, LOC667360
Downstream geneEG545257, LOC100042489, Zfp608, LOC100043089
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173K08.bB6Ng01-173K08.g
ACCGA001937GA001938
length1,1881,136
definitionB6Ng01-173K08.b B6Ng01-173K08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,901,540 - 54,902,739)(54,796,962 - 54,798,100)
sequence
gaattcatctctgatttcaattcttcctactgtggccctgactctaccac
agccacaaccttcttttaccatgtcacggtcacttaattactgaggcttt
gcccttggccttgatcctcgatctctcaggtactcctctggctgcattct
accttcactccaatgcctttgctctgaaatagcctctctacacttaggct
acagcacatctcctgcattttctgagggaacgagaccagcagaaaaggtg
acagccatgtcaacattgtggacacccaccaacttcagagcctctagact
ttctgataagcaaacaaagtaataaatatttgtattatttaagccagttt
tccattgagtgttctttgaccctaattgaaaattacccatagctaagaca
ttatcctaactggtgcaaagagctgagacagtaaaaacatgacatccgtt
taggtaagcctcagcaatactcagaaagaaaacaaacacagccattacag
aaaagaaactctggactcatttaaactcttggagttcagaggatggtgac
gttgacctctggtctcttcactagttttagtcctacatatagactataaa
ctatcataaagcagtatattatatttcattcccctccatattctttgtga
gactgccccatcacaagtttgaagggacgtacagccccttagcaaggtgg
tcttggccagtctctatgtccttctgtactcatgactgactgacaaagaa
tggtgcctgagcgtttcattactgtgaagagacaccaggaccaagacaac
tcttataaagacatttatttggggctagcttacaggttcagaggttctgt
ccattatcatcaaggtgggagcatggtataggaggatctgagagttctgt
attttttttccaaaggcaaacaggagaagactggcttccagggaagttag
gatcagggtcttcaaagcccacgcccgttaatgacacacttcctttcacc
agggcaacactacttcaacaaggccataactcaatagtgctactcattgg
gcccaagcatataacaaacaacacaatggcctgcctttatcatacaagga
gtttctacattccacaggctgaacatggcacctgatcatggcaagaattc
atctcgatatctccattggatcagctccgatcctctgg

gaattctttaaaaagcagtaatataagaggaaaaatgggcaagataggct
ctttggaagaagggcagtatgtttgctcagtgtccatgcctactgacatt
cagtggacactgaccaactgccaacttcccaaagtatccagaaaagctag
gccatctagatttcaagagtcactaaggccaaaaatatcagcagtcccaa
actaggattgagagggggaagtttgaggtggatatggccaagatgcattg
cattcatgtatgaaatcttttaagaataaatagaagataaagtccagacc
aaatcaaccaaacatatttagcttgaacacacacacacacatacacacac
agtacatatatattatcgagctgttatttctaggtggtaagttgggggtg
cctgttttcttattcagggttagtataagaatatgctagagaaaacatac
ccccatctctatgaaaatgtaggaaagaggagacaattacaaggtcgcat
tcacgagagctctgctgatgcaagctatctgctcaggcatgccatttcaa
cagtttgctcccaagtctctcatttcttcaatgagaggatgaagttgaat
aacctctcagctcttgcaactctgatatatttgtttctggcgccagagta
taatctcatcatattctccacacaattttgttccaaaacacgttgacatc
atgttcaattaggttgactcgtgttccccaagtaaacagttgtggtgact
gccaaatgcaccaacaaacaaacaaacaaacaaacaaacaaaagacaaga
gattcaagtttccggcaatgctccaaaaatatctgtgatgtgttgaaaac
ttttttatttgactcattaaggtcataccaaaaaattttaggggtagttt
atcctaccttttccagaatataacccaagaagcgaacaaaaatatttgaa
caagatgtctggattatttttttcaagaacatctgtattcaagtaaagcc
aatgcacaaactagaatgtaatcttttctgttctgaatagccaagcatat
tgaataagccatgcaacagcagatgatccataaatgagccatacttttgt
tggactgcgtctgactaactgtagcatatgaactgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_54901540_54902739
seq2: B6Ng01-173K08.b_43_1230 (reverse)

seq1  CCAGAGGATTTGGAGCTGACTCAAATGGGAAGAATAATGAGAGATGGAAA  50
      |||||||| | |||||||| || |||||  || |||    ||||||  ||
seq2  CCAGAGGA-TCGGAGCTGA-TCCAATGG--AG-ATA--TCGAGATG--AA  41

seq1  TTC-TGCCATGATCAGGTGGCCACTGTTCAGCTCTGTGGAATGTAGAACC  99
      ||| |||||||||||||| |||| |||||||| ||||||||||||||| |
seq2  TTCTTGCCATGATCAGGT-GCCA-TGTTCAGC-CTGTGGAATGTAGAAAC  88

seq1  TCCCTGTATGGATAAAGAGCAGCCATTTGTGGTGGTTTGTATATGCTTGG  149
      ||| ||||| ||||||| |||| |  ||||| || ||  |||||||||||
seq2  TCCTTGTAT-GATAAAG-GCAGGCCATTGTGTTGTTTGTTATATGCTTGG  136

seq1  GCCAATGGAGTAGCACTATTTGGAGGTATGGCCTTGTTGGAGTAGGTGTG  199
      ||| |  |||||||||||||  ||| ||||||||||||| |||||   ||
seq2  GCCCAATGAGTAGCACTATT--GAGTTATGGCCTTGTTGAAGTAGTGTTG  184

seq1  GCCTGGTTGAAGGAAGTGTGTCATT-ACGGGCGTGGGCTTTGAAGACCCT  248
       ||||||  |||||||||||||||| ||||||||||||||||||||||||
seq2  CCCTGGTGAAAGGAAGTGTGTCATTAACGGGCGTGGGCTTTGAAGACCCT  234

seq1  GATCCTAAC-TCCCTGGAAGCCAGTCTTCTCCTGTTTGCCTTTGG-AAAA  296
      ||||||||| ||||||||||||||||||||||||||||||||||| ||||
seq2  GATCCTAACTTCCCTGGAAGCCAGTCTTCTCCTGTTTGCCTTTGGAAAAA  284

seq1  AAATACAGAACTCTCAGATCCTCCTATACCATGCTCCCACCTTGATGATA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAGAACTCTCAGATCCTCCTATACCATGCTCCCACCTTGATGATA  334

seq1  ATGGACAGAACCTCTGAACCTGTAAGCTAGCCCCAAATAAATGTCTTTAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACAGAACCTCTGAACCTGTAAGCTAGCCCCAAATAAATGTCTTTAT  384

seq1  AAGAGTTGTCTTGGTCCTGGTGTCTCTTCACAGTAATGAAACGCTCAGGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTGTCTTGGTCCTGGTGTCTCTTCACAGTAATGAAACGCTCAGGC  434

seq1  ACCATTCTTTGTCAGTCAGTCATGAGTACAGAAGGACATAGAGACTGGCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTCTTTGTCAGTCAGTCATGAGTACAGAAGGACATAGAGACTGGCC  484

seq1  AAGACCACCTTGCTAAGGGGCTGTACGTCCCTTCAAACTTGTGATGGGGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCACCTTGCTAAGGGGCTGTACGTCCCTTCAAACTTGTGATGGGGC  534

seq1  AGTCTCACAAAGAATATGGAGGGGAATGAAATATAATATACTGCTTTATG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCACAAAGAATATGGAGGGGAATGAAATATAATATACTGCTTTATG  584

seq1  ATAGTTTATAGTCTATATGTAGGACTAAAACTAGTGAAGAGACCAGAGGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTATAGTCTATATGTAGGACTAAAACTAGTGAAGAGACCAGAGGT  634

seq1  CAACGTCACCATCCTCTGAACTCCAAGAGTTTAAATGAGTCCAGAGTTTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGTCACCATCCTCTGAACTCCAAGAGTTTAAATGAGTCCAGAGTTTC  684

seq1  TTTTCTGTAATGGCTGTGTTTGTTTTCTTTCTGAGTATTGCTGAGGTTTA  746
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTTCTGTAATGGCTGTGTTTGTTTTCTTTCTGAGTATTGCTGAGGCTTA  734

seq1  CCTAAACGGATGTCATGTTTTTACTGTCTCAGCTCTTTGCACCAGTTAGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAACGGATGTCATGTTTTTACTGTCTCAGCTCTTTGCACCAGTTAGG  784

seq1  ATAATGTCTTAGCTATGGGTAATTTTCAATTAGGGTCAAAGAACACTCAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTCTTAGCTATGGGTAATTTTCAATTAGGGTCAAAGAACACTCAA  834

seq1  TGGAAAACTGGCTTAAATAATACAAATATTTATTACTTTGTTTGCTTATC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAACTGGCTTAAATAATACAAATATTTATTACTTTGTTTGCTTATC  884

seq1  AGAAAGTCTAGAGGCTCTGAAGTTGGTGGGTGTCCACAATGTTGACATGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTCTAGAGGCTCTGAAGTTGGTGGGTGTCCACAATGTTGACATGG  934

seq1  CTGTCACCTTTTCTGCTGGTCTCGTTCCCTCAGAAAATGCAGGAGATGTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACCTTTTCTGCTGGTCTCGTTCCCTCAGAAAATGCAGGAGATGTG  984

seq1  CTGTAGCCTAAGTGTAGAGAGGCTATTTCAGAGCAAAGGCATTGGAGTGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCCTAAGTGTAGAGAGGCTATTTCAGAGCAAAGGCATTGGAGTGA  1034

seq1  AGGTAGAATGCAGCCAGAGGAGTACCTGAGAGATCGAGGATCAAGGCCAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAATGCAGCCAGAGGAGTACCTGAGAGATCGAGGATCAAGGCCAA  1084

seq1  GGGCAAAGCCTCAGTAATTAAGTGACCGTGACATGGTAAAAGAAGGTTGT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAAGCCTCAGTAATTAAGTGACCGTGACATGGTAAAAGAAGGTTGT  1134

seq1  GGCTGTGGTAGAGTCAGGGCCACAGTAGGAAGAATTGAAATCAGAGATGA  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGGTAGAGTCAGGGCCACAGTAGGAAGAATTGAAATCAGAGATGA  1184

seq1  ATTC  1200
      ||||
seq2  ATTC  1188


seq1: chr18_54796962_54798100
seq2: B6Ng01-173K08.g_68_1203

seq1  GAATTCTTTAAAAAGCAGTAATATAAGAGGAAAAATGGGCAAGATAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAAAAGCAGTAATATAAGAGGAAAAATGGGCAAGATAGGCT  50

seq1  CTTTGGAAGAAGGGCAGTATGTTTGCTCAGTGTCCATGCCTACTGACATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGAAGAAGGGCAGTATGTTTGCTCAGTGTCCATGCCTACTGACATT  100

seq1  CAGTGGACACTGACCAACTGCCAACTTCCCAAAGTATCCAGAAAAGCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGACACTGACCAACTGCCAACTTCCCAAAGTATCCAGAAAAGCTAG  150

seq1  GCCATCTAGATTTCAAGAGTCACTAAGGCCAAAAATATCAGCAGTCCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTAGATTTCAAGAGTCACTAAGGCCAAAAATATCAGCAGTCCCAA  200

seq1  ACTAGGATTGAGAGGGGGAAGTTTGAGGTGGATATGGCCAAGATGCATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGATTGAGAGGGGGAAGTTTGAGGTGGATATGGCCAAGATGCATTG  250

seq1  CATTCATGTATGAAATCTTTTAAGAATAAATAGAAGATAAAGTCCAGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATGTATGAAATCTTTTAAGAATAAATAGAAGATAAAGTCCAGACC  300

seq1  AAATCAACCAAACATATTTAGCTTGAACACACACACACACATACACACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAACCAAACATATTTAGCTTGAACACACACACACACATACACACAC  350

seq1  AGTACATATATATTATCGAGCTGTTATTTCTAGGTGGTAAGTTGGGGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATATATATTATCGAGCTGTTATTTCTAGGTGGTAAGTTGGGGGTG  400

seq1  CCTGTTTTCTTATTCAGGGTTAGTATAAGAATATGCTAGAGAAAACATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTTCTTATTCAGGGTTAGTATAAGAATATGCTAGAGAAAACATAC  450

seq1  CCCCATCTCTATGAAAATGTAGGAAAGAGGAGACAATTACAAGGTCGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATCTCTATGAAAATGTAGGAAAGAGGAGACAATTACAAGGTCGCAT  500

seq1  TCACGAGAGCTCTGCTGATGCAAGCTATCTGCTCAGGCATGCCATTTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGAGAGCTCTGCTGATGCAAGCTATCTGCTCAGGCATGCCATTTCAA  550

seq1  CAGTTTGCTCCCAAGTCTCTCATTTCTTCAATGAGAGGATGAAGTTGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGCTCCCAAGTCTCTCATTTCTTCAATGAGAGGATGAAGTTGAAT  600

seq1  AACCTCTCAGCTCTTGCAACTCTGATATATTTGTTTCTGGCGCCAGAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTCAGCTCTTGCAACTCTGATATATTTGTTTCTGGCGCCAGAGTA  650

seq1  TAATCTCATCATATTCTCCACACAATTTTGTTCCAAAACACGTTGACATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCATCATATTCTCCACACAATTTTGTTCCAAAACACGTTGACATC  700

seq1  ATGTTCAATTAGGTTGACTCGTGTTCCCCAAGTAAACAGTTGTGGTGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCAATTAGGTTGACTCGTGTTCCCCAAGTAAACAGTTGTGGTGACT  750

seq1  GCCAAATGCACCAACAAACAAACAAACAAACAAACAAACAAAAGACAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATGCACCAACAAACAAACAAACAAACAAACAAACAAAAGACAAGA  800

seq1  GATTCAAGTTTCCGCCAATGCTCCAAAAATATCTGTGATGTGTTGAAAAC  850
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GATTCAAGTTTCCGGCAATGCTCCAAAAATATCTGTGATGTGTTGAAAAC  850

seq1  TTTTTTATTTGACTCATT-AGGTCATACCAAAAAATTTTAGGGGTAGTTT  899
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTTTTATTTGACTCATTAAGGTCATACCAAAAAATTTTAGGGGTAGTTT  900

seq1  ATCCTACCTTTTCCAGAATATAACCCAAG-AGCGAACAAAAATATTTGAA  948
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATCCTACCTTTTCCAGAATATAACCCAAGAAGCGAACAAAAATATTTGAA  950

seq1  CAAGATGTCTTGATTA-TTTTTTCAAGAACATCTGTATTCAAGTAAAAGC  997
      |||||||||| ||||| ||||||||||||||||||||||||||| |||||
seq2  CAAGATGTCTGGATTATTTTTTTCAAGAACATCTGTATTCAAGT-AAAGC  999

seq1  AAATGCACAAACTAGATGTTAATC-TTTCTG-TCTGATAAGCCAAAGCAT  1045
       |||||||||||||||   ||||| |||||| |||||  |||| ||||||
seq2  CAATGCACAAACTAGAATGTAATCTTTTCTGTTCTGAATAGCC-AAGCAT  1048

seq1  ATTG-ATAAGCCATTGCCAAACAGTTTAGATGTATCATAAATGAG-CATA  1093
      |||| |||||||| |||  |||||   |||||   |||||||||| ||||
seq2  ATTGAATAAGCCA-TGC--AACAG--CAGATGATCCATAAATGAGCCATA  1093

seq1  CTTTTTGTTGGACTGCGTGCTGACTGAGTTGTAGCATATGACCTGG  1139
      | |||||||||||||||| |||||| |  |||||||||||| ||||
seq2  C-TTTTGTTGGACTGCGT-CTGACT-AACTGTAGCATATGAACTGG  1136


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