BAC Information

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BAC

Clone NameB6Ng01-174H12
Chromosome18 (Build37)
Map Location 61,054,237 - 61,234,620
singlet/doubletdoublet
Overlap geneLOC100042699, Arsi, Camk2a, Slc6a7, Cdx1, Pdgfrb
Upstream geneEG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74, Tcof1
Downstream geneCsf1r, A630042L21Rik, Slc26a2, Pde6a, EG667279, Ppargc1b, LOC667675, 4933429F08Rik, Csnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3, Sh3tc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174H12.bB6Ng01-174H12.g
ACCGA002539GA002540
length689569
definitionB6Ng01-174H12.b B6Ng01-174H12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,054,237 - 61,054,921)(61,234,045 - 61,234,620)
sequence
ctctctatggatttacactctggatagttgacactctatgcggaccttta
cctgtggtttctttgacatttatttgtgttgtacgtgcatggggacttca
tttctttttatagtcaagtattattccattgtacgtgtttagtaatttgt
gtatccatccaccgagaggacatttgtggtctttttacctttgggctgtt
ataaatagtgctgctgtgaatattcatataaatgtatctatttaagtctc
tgttttcagttattttggatgtttacctaggaggggtgtttcagggtcct
acacttcacggtgggcaaagtcaaattcagtactgtggctgctctatcct
atgtacccaccagcaatgaggcatttgacgttgggcctttctggcaactt
ccatgctagagtagaaatgattcccagagttgtaaaggcaaaacatgaac
aaatcccagccacccctgaagcttagccatgtcctatatcttggttacac
tgttggagaatccctgtttgcctgcttactggttggattgtgtctttgat
tggctcccttttagtgttacaagatctggatggctcgagcttgacacttg
aggttgtcctggggagaacacagactccccagttggagatgaagaacccc
ccacagctggatcttttttttgttggggggggagttctt
tttttttaaaaaagaaaaaaaaaagaaatacggtcattgcaagcacagac
aacagtccatgagcaatgtacttctgtatttaggctgattacacaacacc
gaggaaaatcccagatctcacaacaagcagctgcaaagggcaataacttc
atgattattacgatgttgacagcccagtgggtaaccaggccctcagatca
tcgcagttggcagaatgacttccaacactgatgtaaacaaagccagttcc
tggttagtacatggatgggctctgttactttctcacggttttcaaaatgt
attgtggaaatatgaaaaaggaggtgggagggatggtcagctgttaggag
cacttgttcatgcagacaaccttggttcaataccgagcacctacccactg
gctcacaaccatctgtcactccagtttcagaggatctgatgacctcttct
ggccttctcaagtaccagacacacatacatatgcacgcacacacacacac
acacacacacacacatacacacacacacaggaacactgacatacaggcaa
gacttcatcatgaaggcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_61054237_61054921
seq2: B6Ng01-174H12.b_43_731

seq1  CTCTCTATGGATTTACACTCTGGATAGTTGACACACTATGCGGACCTTTA  50
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTCTCTATGGATTTACACTCTGGATAGTTGACACTCTATGCGGACCTTTA  50

seq1  CCTGTGGTTTCTTTGACATTTATTTGTGTTGTACGTGCATGGGGACTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGTTTCTTTGACATTTATTTGTGTTGTACGTGCATGGGGACTTCA  100

seq1  TTTCTTTTTATAGTCAAGTATTATTCCATTGTACGTGTTTAGTAATTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTATAGTCAAGTATTATTCCATTGTACGTGTTTAGTAATTTGT  150

seq1  GTATCCATCCACCGAGAGGACATTTGTGGTCTTTTTACCTTTGGGCTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCATCCACCGAGAGGACATTTGTGGTCTTTTTACCTTTGGGCTGTT  200

seq1  ATAAATAGTGCTGCTGTGAATATTCATATAAATGTATCTATTTAAGTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAGTGCTGCTGTGAATATTCATATAAATGTATCTATTTAAGTCTC  250

seq1  TGTTTTCAGTTATTTTGGATGTTTACCTAGGAGGGGTGTTTCAGGGTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCAGTTATTTTGGATGTTTACCTAGGAGGGGTGTTTCAGGGTCCT  300

seq1  ACACTTCACGGTGGGCAAAGTCAAATTCAGTACTGTGGCTGCTCTATCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCACGGTGGGCAAAGTCAAATTCAGTACTGTGGCTGCTCTATCCT  350

seq1  ATGTACCCACCAGCAATGAGGCATTTGACGTTGGGCCTTTCTGGCAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACCCACCAGCAATGAGGCATTTGACGTTGGGCCTTTCTGGCAACTT  400

seq1  CCATGCGAGAGTAGAAATGATTCCCAGAGTTGTAAAGGCAAAACATGAAC  450
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTAGAGTAGAAATGATTCCCAGAGTTGTAAAGGCAAAACATGAAC  450

seq1  AAATCCCAGCCACCCCTGAAGCTTAGCCATGTCCTATATCTTGGTTACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCAGCCACCCCTGAAGCTTAGCCATGTCCTATATCTTGGTTACAC  500

seq1  TGTTGGAGAATCCCTGTTTGCCTGCTTACTGGTTGGATTGTGTC-TTGAT  549
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGTTGGAGAATCCCTGTTTGCCTGCTTACTGGTTGGATTGTGTCTTTGAT  550

seq1  TGGCTCCCTTTTAGTGTTACAAGATCTGGATGGCTCGAGCTTGACACTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCCTTTTAGTGTTACAAGATCTGGATGGCTCGAGCTTGACACTTG  600

seq1  AGGTTGTCCTGGGGAGAACACAGACTCCCCAGTTGGAGATGAAGAA-CCC  648
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGGTTGTCCTGGGGAGAACACAGACTCCCCAGTTGGAGATGAAGAACCCC  650

seq1  CCACAGCTGGATC--TTTTTTGTTGGGGGGGGAGTTCTT  685
      |||||||||||||  ||||||||||||||||||||||||
seq2  CCACAGCTGGATCTTTTTTTTGTTGGGGGGGGAGTTCTT  689

seq1: chr18_61234045_61234620
seq2: B6Ng01-174H12.g_67_641 (reverse)

seq1  CTGCCTTCATGATGAAGTCTTGCCTGTATGTCAGTGTTCCTGTGTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTCATGATGAAGTCTTGCCTGTATGTCAGTGTTCCTGTGTGTGTG  50

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCATATGTATGTGTG  100
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCATATGTATGTGTG  100

seq1  TCTGGTACTTGAGAAGGCCAGAAGAGGTCATCAGATCCTCTGAAACTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTACTTGAGAAGGCCAGAAGAGGTCATCAGATCCTCTGAAACTGGA  150

seq1  GTGACAGATGGTTGTGAGCCAGTGGGTAGGTGCTCGGTATTGAACCAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGATGGTTGTGAGCCAGTGGGTAGGTGCTCGGTATTGAACCAAGG  200

seq1  TTGTCTGCATGAACAAGTGCTCCTAACAGCTGACCATCCCTCCCACCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGCATGAACAAGTGCTCCTAACAGCTGACCATCCCTCCCACCTCC  250

seq1  TTTTTCATATTTCCACAATACATTTTGAAAACCGTGAGAAAGTAACAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATATTTCCACAATACATTTTGAAAACCGTGAGAAAGTAACAGAG  300

seq1  CCCATCCATGTACTAACCAGGAACTGGCTTTGTTTACATCAGTGTTGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCATGTACTAACCAGGAACTGGCTTTGTTTACATCAGTGTTGGAA  350

seq1  GTCATTCTGCCAACTGCGATGATCTGAGGGCCTGGTTACCCACTGGGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTCTGCCAACTGCGATGATCTGAGGGCCTGGTTACCCACTGGGCTG  400

seq1  TCAACATCGTAATAATCATGAAGTTATTGCCCTTTGCAGCTGCTTGTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATCGTAATAATCATGAAGTTATTGCCCTTTGCAGCTGCTTGTTGT  450

seq1  GAGATCTGGGATTTTCCTCGGTGTTGTGTAATCAGCCTAAATACAGAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTGGGATTTTCCTCGGTGTTGTGTAATCAGCCTAAATACAGAAGT  500

seq1  ACATTGCGCATGGACTGTTGTCTGTGCTTGCAATGACCGTATTTCTTTTT  550
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCTCATGGACTGTTGTCTGTGCTTGCAATGACCGTATTTCTTTTT  550

seq1  TTTTTCTTTTTTTAAAAAAAGAATTC  576
      |||||| |||||||||||||||||||
seq2  TTTTTC-TTTTTTAAAAAAAGAATTC  575