BAC Information

Click to search

BAC

Clone NameB6Ng01-175N14
Chromosome18 (Build37)
Map Location 45,247,300 - 45,378,306
singlet/doubletdoublet
Overlap geneLOC225457
Upstream geneSpink12, LOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot, Dcp2, Mcc, LOC100042883, Ythdc2, LOC626309
Downstream geneLOC100042900, Kcnn2, Trim36, LOC100042905
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175N14.bB6Ng01-175N14.g
ACCGA003544GA003545
length1,094839
definitionB6Ng01-175N14.b B6Ng01-175N14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,247,300 - 45,248,391)(45,377,759 - 45,378,306)
sequence
gaattcagagaaattgagttatgttctcataaaatgaattagattcatgc
atttttgctataaaacaatattaaggcatcataggctatctgggaaatga
atatctcatgattttagcacccttatgtagtgaacactttggaaaataga
tatgaaatttctgtttaaagatctatgtcatcagtatgcagagacatttc
tattaagggcatttaatgtacacccacacaaacatacatgtatacacaca
catacataatatttattcaagtgtctataggaatgaagtatagataaaat
acttcgtttaatgtcgattaattaatggtcaatcctgttcatcattggta
cttattatcttgactaccgtttccccactgaagtagatgtgattgtgtat
atcatctgctaaccttgagaatagtcattatactatagaacctgaggaaa
gagtgcttaaatcttacttgttcagtcagtggctgcttgatgaaccagat
caggaccttagtttggcgggacagaacacaagctacccaggctgatcatg
gaaagagactgaaatgtcgcagtgacagtaagtttcagaacacgtgccag
catgtcttatttagaactatcagtctgagtatttaaagtgctcagctata
gggcagaacattactatgttgtttaatgtgtaatgctgtgcacacagtag
gctctaaatgtttagctctgctactctccactttaaaaatatcccccaaa
atgtaaagaccttacaaaaatcatgcatttctgagcattatagctttctt
ggcctttcccaacatatgcgctcatttcctattcttttgaaaaaattcaa
agtatttgcagttcttttatgatttattggttctgcaaaatgtctatgag
tcagaatgataaaatacctaagagaaataaagactgatgacatgaaaatt
agtaggtgcagggactgagaacacgtgggctctctgattctgaggatctt
catctgaggattcacctgagaacagattaactaatgctctctctggcatg
actggtgctacttctgaccacatatgtgtgtattatgtttgtgg

gaattctctcacctgtcttggagtagccagtgccagtatttgagtcacag
tcctttttctttgcaataggcacattggtccttctctaaagtcttatgga
tgggtcttcttctttcaggtctaggttccctgttgcccagttaccctgtc
tgtctattcttaggcctgtttcttcctttacgctcccctactactgcggc
caaaatcttgcttaagttcctctcctgtcttctatcccttttattctccc
tctcttcttttttttcttctgtctctctcttgtgatacaccttttctgcc
tccctgactaaatcttgtaaagccatggcatgtaatctttctagactctg
tctatcaatctttctagaaaaacagatgggggctttgttgggccctgcat
cacctctcttaccttagccaaattggtagggtgtcttgtcgctcccttta
gactagagcccggtgtaaactgccaaccactccttaccttgagccatgtt
gtagctctaatctggccggtctagagggaacccagcgttccagttgtaca
gatctgcagagattgcaggtctgtgggcagattgcccacagctcgaaaag
aaaaaccgaagtggtgtcaggagctccatctgctgggggactctgggctc
gttggctccagatccccatcttctagctgtgccagcggtcccagtgggga
taaaagatagggcagaggggaaggagctgtgggttgaagaggaggctctg
tttcagcagagactgtggtttcatttttgttcaggcttggggctgcgtgc
tcactgggggagtgggagcagctttgaggaaggagcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_45247300_45248391
seq2: B6Ng01-175N14.b_46_1139

seq1  GAATTCAGAGAAATTGAGTTATGTTCTCATAAAATGAATTAGATTCATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGAAATTGAGTTATGTTCTCATAAAATGAATTAGATTCATGC  50

seq1  ATTTTTGCTATAAAACAATATTAAGGCATCATAGGCTATCTGGGAAATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGCTATAAAACAATATTAAGGCATCATAGGCTATCTGGGAAATGA  100

seq1  ATATCTCATGATTTTAGCACCCTTATGTAGTGAACACTTTGGAAAATAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCATGATTTTAGCACCCTTATGTAGTGAACACTTTGGAAAATAGA  150

seq1  TATGAAATTTCTGTTTAAAGATCTATGTCATCAGTATGCAGAGACATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAATTTCTGTTTAAAGATCTATGTCATCAGTATGCAGAGACATTTC  200

seq1  TATTAAGGGCATTTAATGTACACCCACACAAACATACATGTATACACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGGGCATTTAATGTACACCCACACAAACATACATGTATACACACA  250

seq1  CATACATAATATTTATTCAAGTGTCTATAGGAATGAAGTATAGATAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATAATATTTATTCAAGTGTCTATAGGAATGAAGTATAGATAAAAT  300

seq1  ACTTCGTTTAATGTCGATTAATTAATGGTCAATCCTGTTCATCATTGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCGTTTAATGTCGATTAATTAATGGTCAATCCTGTTCATCATTGGTA  350

seq1  CTTATTATCTTGACTACCGTTTCCCCACTGAAGTAGATGTGATTGTGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTATCTTGACTACCGTTTCCCCACTGAAGTAGATGTGATTGTGTAT  400

seq1  ATCATCTGCTAACCTTGAGAATAGTCATTATACTATAGAACCTGAGGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTGCTAACCTTGAGAATAGTCATTATACTATAGAACCTGAGGAAA  450

seq1  GAGTGCTTAAATCTTACTTGTTCAGTCAGTGGCTGCTTGATGAACCAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTTAAATCTTACTTGTTCAGTCAGTGGCTGCTTGATGAACCAGAT  500

seq1  CAGGACCTTAGTTTGGCGGGACAGAACACAAGCTACCCAGGCTGATCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCTTAGTTTGGCGGGACAGAACACAAGCTACCCAGGCTGATCATG  550

seq1  GAAAGAGACTGAAATGTCGCAGTGACAGTAAGTTTCAGAACACGTGCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGACTGAAATGTCGCAGTGACAGTAAGTTTCAGAACACGTGCCAG  600

seq1  CATGTCTTATTTAGAACTATCAGTCTGAGTATTTAAAGTGCTCAGCTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTTATTTAGAACTATCAGTCTGAGTATTTAAAGTGCTCAGCTATA  650

seq1  GGGCAGAACATTACTATGTTGTTTAATGTGTAATGCTGTGCACACAGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGAACATTACTATGTTGTTTAATGTGTAATGCTGTGCACACAGTAG  700

seq1  GCTCTAAATGTTTAGCTCTGCTACTCTCCACTTTAAAAATATCCCCCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAAATGTTTAGCTCTGCTACTCTCCACTTTAAAAATATCCCCCAAA  750

seq1  ATGTAAAGACCTTACAAAAATCATGCATTTCTGAGCATTATAGCTTTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAGACCTTACAAAAATCATGCATTTCTGAGCATTATAGCTTTCTT  800

seq1  GGCCTTTCCCAACATATGCGCTCATTTCCTATTCTTTTGAAAAAATTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTCCCAACATATGCGCTCATTTCCTATTCTTTTGAAAAAATTCAA  850

seq1  AGTATTTGCAGTTCTTTTATGATTTATTGGTTCTGCAAAATGTCTATGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTGCAGTTCTTTTATGATTTATTGGTTCTGCAAAATGTCTATGAG  900

seq1  TCAGAATGATAAAATACCTAAGAGAAATAAAGACTGATGACATGAAAAAT  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCAGAATGATAAAATACCTAAGAGAAATAAAGACTGATGACATG-AAAAT  949

seq1  TAGTAGGTGCAGGGACTGAGAACACGTGGGCTCTCTGATTCTGAGGATCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGGTGCAGGGACTGAGAACACGTGGGCTCTCTGATTCTGAGGATCT  999

seq1  TCATCTGAGGATTCACCTGAGAACAGATTAACTAATGCTCTCTCTGGCAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGAGGATTCACCTGAGAACAGATTAACTAATGCTCTCTCTGGCAT  1049

seq1  GACT-GTGCTACTTCTGACCACATATGTGTGTA-TATG-TTGTGG  1092
      |||| |||||||||||||||||||||||||||| |||| ||||||
seq2  GACTGGTGCTACTTCTGACCACATATGTGTGTATTATGTTTGTGG  1094


seq1: chr18_45377759_45378306
seq2: B6Ng01-175N14.g_358_906 (reverse)

seq1  GGGGCTCC-TCCTC-CAGCTGCTCCCACTCCCCCAGTGAGCACGCAGCCC  48
      |||||||| |||||  ||||||||||||||||||||||||||||||||||
seq2  GGGGCTCCTTCCTCAAAGCTGCTCCCACTCCCCCAGTGAGCACGCAGCCC  50

seq1  CAAGCCTGAACAAAACTGAAACCACAGTCTCTGCCTGAAACAGAGCCTCC  98
      ||||||||||||||| ||||||||||||||||| ||||||||||||||||
seq2  CAAGCCTGAACAAAAATGAAACCACAGTCTCTG-CTGAAACAGAGCCTCC  99

seq1  TCTTCAACCCACAGCTCCTTCCCCTCTGCCCTATCTTTTATCCCCACTGG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAACCCACAGCTCCTTCCCCTCTGCCCTATCTTTTATCCCCACTGG  149

seq1  GACCGCTGGCACAGCTAGAAGATGGGGATCTGGAGCCAACGAGCCCAGAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGCTGGCACAGCTAGAAGATGGGGATCTGGAGCCAACGAGCCCAGAG  199

seq1  TCCCCCAGCAGATGGAGCTCCTGACACCACTTCGGTTTTTCTTTTCGAGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCAGCAGATGGAGCTCCTGACACCACTTCGGTTTTTCTTTTCGAGC  249

seq1  TGTGGGCAATCTGCCCACAGACCTGCAATCTCTGCAGATCTGTACAACTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCAATCTGCCCACAGACCTGCAATCTCTGCAGATCTGTACAACTG  299

seq1  GAACGCTGGGTTCCCTCTAGACCGGCCAGATTAGAGCTACAACATGGCTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGCTGGGTTCCCTCTAGACCGGCCAGATTAGAGCTACAACATGGCTC  349

seq1  AAGGTAAGGAGTGGTTGGCAGTTTACACCGGGCTCTAGTCTAAAGGGAGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAAGGAGTGGTTGGCAGTTTACACCGGGCTCTAGTCTAAAGGGAGC  399

seq1  GACAAGACACCCTACCAATTTGGCTAAGGTAAGAGAGGTGATGCAGGGCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGACACCCTACCAATTTGGCTAAGGTAAGAGAGGTGATGCAGGGCC  449

seq1  CAACAAAGCCCCCATCTGTTTTTCTAGAAAGATTGATAGACAGAGTCTAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAGCCCCCATCTGTTTTTCTAGAAAGATTGATAGACAGAGTCTAG  499

seq1  AAAGATTACATGCCATGGCTTTACAAGATTTAGTCAGGGAGGCAGAAAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTACATGCCATGGCTTTACAAGATTTAGTCAGGGAGGCAGAAAAG  549


| Home | SequenceCutter | Blast | Download |