BAC Information

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BAC

Clone NameB6Ng01-176H01
Chromosome18 (Build37)
Map Location 17,337,921 - 17,339,021
singlet/doubletsinglet
Overlap genenone
Upstream genePpia-ps18_172.1, EG665509, Cdh2, LOC665519, 1700001G01Rik
Downstream gene4921533I20Rik, LOC100040647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176H01.bB6Ng01-176H01.g
ACCGA003973GA003974
length1,1281,111
definitionB6Ng01-176H01.b B6Ng01-176H01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatgttgtaattgttttcaaaagctgagtaatagtttttatcca
tccttcagttgggatatacctaggttgtttctagttcctggctattgtga
ataagcttgctctgaacatagttgaacaagtacccttgtggtataatgga
gtaccttttgattatatgcccagcagtagtatggtggagtctggaagtaa
attgattcctagtttaaaaaacaaacaaataaacaaacaaaaccaacaaa
aactccatactgatttccaaagtggaaatataggtttgtattcccaccag
cagtggaggattttcctattgctccacatcctcgccagcatcagctgtca
tttgtatttttgctcttaggcatcctgacagatataagatggaatctcaa
agtcgttttgattttgatttccctgatggctaaggttgttcaatatttct
ttaagtgtttctcagctatttgagattcctctgctgagaattctctgttt
agatctgtaccccattttttcttggattatttagtttgctgatatctact
ttcttgagttctttgcatattttagatattagcctactgtcaagtgtgga
gttgtgaaaatgtatttccattttgtgggcttccattttatcctattgat
agtgtactttgccttacagaagtttttcagtttcatgtgttcaaggctat
ttcccattttctcttctatcaggttcagtatatttggttttttatctact
tggatttaagtttttgtgctaggtgatagatatggatatatttgcattct
tctacatgccaacatccagttagaccagcagtatgtgtttgaagatgttt
tcttttagccattgtatatttatggcttctctatcaaatatcaaatatat
cccaatttatatatttatatcaaatataagtgtgtaggatttataccctg
gtggcttcaatttcaaccacattgatcactgatcattgtgtaatgtctgg
tatttatgctgataccatgaattttgcttttgtttcttggtatcaccttt
gtctgcttgcttgttgtctgatttatctcccatatgttacagcctttgat
acctccagtgaacatttataactgctct
gaattctttccctacatgggacatttatatcatctgctctgaggctcagg
aaacaaagagagtggaaagactatagtagaagcagaacggtgaacaactg
tcctttagatagaacatggtcactgcaatcatggatacacataccacatg
actatttcaattatggatacacatacctacaacttggccactgcaatcat
gagtacacacacagcatgggcattgcaatcatggatacacagcatctatg
gatacctgcataaaaatcacactaaaaacacatgaaaatagaactacaaa
gaaaggagttgagcaggagttaagggaggtgatgggagaggataaaggca
tgaacaattccttgaaggaaggcaaggaattgtcaaaatattaaaatggg
gaaaaaatgagaagtagcaagactttacattgtacctatgatgaaattca
cactgtactacaaagttgttaaaaagagcgttctttgtgtttagcacagg
gctgagcagtttataaacatttttaaagcagtcacctgataaatctatgt
tgctcatgtttttttggaggatcaaattttgatttactaaatttaaagat
ataattattgagtcatagtttgagtagaaaattgtctggctttggagtca
gtgccatttttctcctctgcacaactcaactttaacagtgaacaagactg
aggacatcttctatgccagacacatttgtaaaaccaatgaagtcactgca
ttccatcaaaattaccagacatgaatgtcaggaaatgtctaacctgtcca
cgcctttactgattgctaccaaagtcataaatcaaatatctttctcagcc
tcctctcctccctgatcctgcctcttcctattatcctcccactctttcgt
ccctttccttctctgccttcccatcctctgttattcccctcattttatct
cagaactgaagctcatggtcttgcacaaaggctacattgtcccagcttgc
ccctttgggttcacccttactctcatcccggttattgtttatcctgtttt
tctgtgctactgctaataaatatatctggaggcttatttcaatttaagtc
gtgtaaatatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_17337921_17339021
seq2: B6Ng01-176H01.g_64_1174

seq1  GAATTCTTTCCCTACATGGGACATTTATATCATCTGCTCTGAGGCTCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCCTACATGGGACATTTATATCATCTGCTCTGAGGCTCAGG  50

seq1  AAACAAAGAGAGTGGAAAGACTATAGTAGAAGCAGAACGGTGAACAACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGAGAGTGGAAAGACTATAGTAGAAGCAGAACGGTGAACAACTG  100

seq1  TCCTTTAGATAGAACATGGTCACTGCAATCATGGATACACATACCACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAGATAGAACATGGTCACTGCAATCATGGATACACATACCACATG  150

seq1  ACTATTTCAATTATGGATACACATACCTACAACTTGGCCACTGCAATCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTCAATTATGGATACACATACCTACAACTTGGCCACTGCAATCAT  200

seq1  GAGTACACACACAGCATGGGCATTGCAATCATGGATACACAGCATCTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACACACACAGCATGGGCATTGCAATCATGGATACACAGCATCTATG  250

seq1  GATACCTGCATAAAAATCACACTAAAAACACATGAAAATAGAACTACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCTGCATAAAAATCACACTAAAAACACATGAAAATAGAACTACAAA  300

seq1  GAAAGGAGTTGAGCAGGAGTTAAGGGAGGTGATGGGAGAGGATAAAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAGTTGAGCAGGAGTTAAGGGAGGTGATGGGAGAGGATAAAGGCA  350

seq1  TGAACAATTCCTTGAAGGAAGGCAAGGAATTGTCAAAATATTAAAATGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAATTCCTTGAAGGAAGGCAAGGAATTGTCAAAATATTAAAATGGG  400

seq1  GAAAAAATGAGAAGTAGCAAGACTTTACATTGTACCTATGATGAAATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAATGAGAAGTAGCAAGACTTTACATTGTACCTATGATGAAATTCA  450

seq1  CACTGTACTACAAAGTTGTTAAAAAGAGCGTTCTTTGTGTTTAGCACAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTACTACAAAGTTGTTAAAAAGAGCGTTCTTTGTGTTTAGCACAGG  500

seq1  GCTGAGCAGTTTATAAACATTTTTAAAGCAGTCACCTGATAAATCTATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCAGTTTATAAACATTTTTAAAGCAGTCACCTGATAAATCTATGT  550

seq1  TGCTCATGTTTTTTTGGAGGATCAAATTTTGATTTACTAAATTTAAAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATGTTTTTTTGGAGGATCAAATTTTGATTTACTAAATTTAAAGAT  600

seq1  ATAATTATTGAGTCATAGTTTGAGTAGAAAATTGTCTGGCTTTGGAGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTATTGAGTCATAGTTTGAGTAGAAAATTGTCTGGCTTTGGAGTCA  650

seq1  GTGCCATTTTTCTCCTCTGCACAACTCAACTTTAACAGTGAACAAGACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCATTTTTCTCCTCTGCACAACTCAACTTTAACAGTGAACAAGACTG  700

seq1  AGGACATCTTCTATGCCAGACACATTTGTAAAACCAATGAAGTCACTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATCTTCTATGCCAGACACATTTGTAAAACCAATGAAGTCACTGCA  750

seq1  TTCCATCAAAATTACCAGACATGAATGTCAGGAAATGTCTAACCTGTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCAAAATTACCAGACATGAATGTCAGGAAATGTCTAACCTGTCCA  800

seq1  CGCCTTTACTGATTGCTACCAAAGTCATAAATCAAATATCTTTCTCAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTTACTGATTGCTACCAAAGTCATAAATCAAATATCTTTCTCAGCC  850

seq1  TCCTCTCCTCCCTGATCCTGCCTCTTCCTATTATCCTCCCACTCTTTCGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCCTCCCTGATCCTGCCTCTTCCTATTATCCTCCCACTCTTTCGT  900

seq1  CCC-TTCCTTCTCTGCCTTCCCATCCTCTGTTATT-CCCTCATTTTATCT  948
      ||| ||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCCTTTCCTTCTCTGCCTTCCCATCCTCTGTTATTCCCCTCATTTTATCT  950

seq1  CAG-ACTGAAGCTCATGGTCTTGCACAAAGGCTACA-TGT-CCAGC-TGC  994
      ||| |||||||||||||||||||||||||||||||| ||| ||||| |||
seq2  CAGAACTGAAGCTCATGGTCTTGCACAAAGGCTACATTGTCCCAGCTTGC  1000

seq1  CCCTTTGGGTTCACCCTTACTCTCAT-CCGGTTATTGTTTTATCTG-TTT  1042
      |||||||||||||||||||||||||| |||||||||||||   ||| |||
seq2  CCCTTTGGGTTCACCCTTACTCTCATCCCGGTTATTGTTTATCCTGTTTT  1050

seq1  TCTGTGGCTACTGCTATAATATAT-TCTGGAAGGCTTAATTCA--TTTAG  1089
      ||||| ||||||||||  | |||| ||||| ||||||| ||||  || ||
seq2  TCTGT-GCTACTGCTAATAAATATATCTGG-AGGCTTATTTCAATTTAAG  1098

seq1  TCGTGT-AATATG  1101
      |||||| ||||||
seq2  TCGTGTAAATATG  1111