BAC Information

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BAC

Clone NameB6Ng01-176L17
Chromosome18 (Build37)
Map Location 31,601,829 - 31,739,451
singlet/doubletdoublet
Overlap geneSyt4, LOC383420
Upstream geneEG666111, EG666114, LOC433168, Rit2, EG666130
Downstream geneSlc25a46, Sap130, LOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2, Ercc3, Bin1, Gypc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176L17.bB6Ng01-176L17.g
ACCGA004193GA004194
length1,1921,158
definitionB6Ng01-176L17.b B6Ng01-176L17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,738,626 - 31,739,451)(31,601,829 - 31,602,993)
sequence
gaattcaagccaatatatatgtttctcttattgatactagaggactactc
atggtagggataaaaggtaatttttttttctagatagaaatgaagatcaa
gagaaacatatatgtaaaattgaacatttgccaccacctatttaaaaaaa
attcccttgcatcataaaactaaagttaagtattagttagcagaacgcag
gagaagagattagagcactcacagtgattaagaaaacaaaaccaaaaatc
gatttaaacaataaaatcaagcccacagttaaatttagtaaaaaagtccc
aaattactgagtcagaaatgaataatttggccattgctaaacgtagcatg
ccacacagcatgagttgtatgaccatgctatgaaagaccatgtgccagat
tggacaacctacacgaaatggacaaatctgtaagcaaactgcaacagcag
gcacaagaactagaaagtctgagcaggttaggccaagtgtgaaccagtta
aaaactcaaaaacaaagtcttggactagctttattggtgaagtctaccaa
acaactaaagaatttgtaccaatgctccattcaccaaaaacttgaggtgg
aaacactttccaacaaccttatgaagccagaattaagccaatacaggatt
aagtcctagacaagagctacaaagtaacatcttttatgagtttacatgca
aaaattaccctcctcccaaacctatcaaactagggactgcagagatggat
cagcaggtaagaacaccttcagaggatccctattcagttcccagcatcca
catggcagcttacaacagtgacaattccttgtaactacagttccaaggaa
tccaacaccctcttctctaattataattacttccctttccttccagtcct
catgttcattcctcaatctcagattgcctttatttttattacacacacac
acacacacacacacacacacacacacacacacacacacacacacacactc
atatagagtaagtacatctgctgagtctgttttttgtcttttgtgatggt
ggtttcagagctacactatgtgctgggaaatgaatcagactcatttctgg
gaggtgacaaatttctttcttgacagcattagtgtgcgcttgagtttttg
tctcaacttgggacccatgagcttttctcctccatttacatg
gaattcaagccacagaaaatctattctgcatccaacaattattctggacc
agggtcatgatggagttagaattcttgtcctttcatagtcaaagtctctt
ttcaatctaaggagaaaataaataaatttaagtacttgggagaactgact
ctaactttaaaacttggttttagggagtaacatagatccctttactgaag
gctatttatgcttagttttatatgaaagacattacctaagactgctaaga
ctgtaacgttcaagctttaactacaactaacaaaacaataacatgggact
tgcttataattaagaacagctaaataaaaatgcatcaaaaaagagctaaa
gttgagaaaaaccacctaaaactaaacagtttaccaaaaaagcacaccaa
agaaagcaaaacaacaaccagggagctatttgatcctcatgggccccagt
cagtcaggtgcctcacacaagctgtgcaactctctgggcctgaattccac
tattgtcaatacaagacaggaagatgattacaaagtgttctaaagatatt
tttagctcaaaaatattgtgatttttaaaaaacataaataatgtgattgt
tgttttcttaagttgcggcattagaacaaattgttctgaaatacgaagat
taggaactgtgaagtttatttaaagcagaaaaggattctctttgctaaat
tgatatcatgtcatttcctaattatccaagagctatcaaaggagtccatg
tcagagggcagggtaacacacttcctgtatgcaggagaaaaaaaatggac
attcggaagtcaacataacagaatgacccttgttcaaaagcaatttcatg
aaaagtacattcaaatcccacatcctgagaaggaactggcttacttttta
atttcggtttcaaattcagttactctgaactgaaacactttaataacata
tgctaagagacacacacatgaaattttaagtcgcagcctttttcaaacta
ttttaatagaaattttaaaaatacctgttacataaatgatgtattaagta
tcatgcaaatgcttctctattttgatcacaaagattcctttgagccattc
catgtgattaaacttccctttgcattcctaatccttgtctcagctaccta
ttacccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_31738626_31739451
seq2: B6Ng01-176L17.b_422_1237 (reverse)

seq1  CATGTAAATGAGAGAGAAAAAGCTCATGGGGTCCCAGCTGAGACAAAAAA  50
      |||||||||| |||   |||||||||||||  || || ||||||||||| 
seq2  CATGTAAATG-GAGGAGAAAAGCTCATGGGTCCCAAGTTGAGACAAAAA-  48

seq1  CCTCAGGC---AACTAATGCTGTTCAAAGAAGAAAATTTGTCA-CTCCCA  96
       |||| ||    |||||||||||   |||||  |||||||||| ||||||
seq2  -CTCAAGCGCACACTAATGCTGT--CAAGAAAGAAATTTGTCACCTCCCA  95

seq1  GAAATGAGTTCCTTGATTCATTATCCAGCACATAGTGGTAGCTCTGAAAC  146
      |||||||||    |||||||||  |||||||||||| |||||||||||||
seq2  GAAATGAGT---CTGATTCATTTCCCAGCACATAGT-GTAGCTCTGAAAC  141

seq1  CACATTCAC-AAAGAC-AAAAACAGACTCAGCAGGTTGTACTTACTTCTT  194
      |||  |||| |||||| |||||||||||||||| | ||||||||||   |
seq2  CACCATCACAAAAGACAAAAAACAGACTCAGCA-GATGTACTTACT--CT  188

seq1  ATATGAGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  244
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAGT-GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  237

seq1  TGTGTGTGTGTGTGTAATAAAAAATAAAGGCAATCTGAGATTGGAGGGAA  294
      |||||||||||||||||| ||||||||||||||||||||||||   ||||
seq2  TGTGTGTGTGTGTGTAAT-AAAAATAAAGGCAATCTGAGATTG--AGGAA  284

seq1  TGAACATGAGGACTGGAAGGAAAGGGAAGTAATTATAATTAGAGAAGAGG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATGAGGACTGGAAGGAAAGGGAAGTAATTATAATTAGAGAAGAGG  334

seq1  GTGTTGGATTCCTTGGAACTGTAGTTACAAGGAATTGTCACTGTTGTAAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGGATTCCTTGGAACTGTAGTTACAAGGAATTGTCACTGTTGTAAG  384

seq1  CTGCCATGTGGATGCTGGGAACTGAATAGGGATCCTCTGAAGGTGTTCTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATGTGGATGCTGGGAACTGAATAGGGATCCTCTGAAGGTGTTCTT  434

seq1  ACCTGCTGATCCATCTCTGCAGTCCCTAGTTTGATAGGTTTGGGAGGAGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTGATCCATCTCTGCAGTCCCTAGTTTGATAGGTTTGGGAGGAGG  484

seq1  GTAATTTTTGCATGTAAACTCATAAAAGATGTTACTTTGTAGCTCTTGTC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTTTGCATGTAAACTCATAAAAGATGTTACTTTGTAGCTCTTGTC  534

seq1  TAGGACTTAATCCTGTATTGGCTTAATTCTGGCTTCATAAGGTTGTTGGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACTTAATCCTGTATTGGCTTAATTCTGGCTTCATAAGGTTGTTGGA  584

seq1  AAGTGTTTCCACCTCAAGTTTTTGGTGAATGGAGCATTGGTACAAATTCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTTCCACCTCAAGTTTTTGGTGAATGGAGCATTGGTACAAATTCT  634

seq1  TTAGTTGTTTGGTAGACTTCACCAATAAAGCTAGTCCAAGACTTTGTTTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGTTTGGTAGACTTCACCAATAAAGCTAGTCCAAGACTTTGTTTT  684

seq1  TGAGTTTTTAACTGGTTCACACTTGGCCTAACCTGCTCAGACTTTCTAGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTTTAACTGGTTCACACTTGGCCTAACCTGCTCAGACTTTCTAGT  734

seq1  TCTTGTGCCTGCTGTTGCAGTTTGCTTACAGATTTGTCCATTTCGTGTAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGCCTGCTGTTGCAGTTTGCTTACAGATTTGTCCATTTCGTGTAG  784

seq1  GTTGTCCAATCTGGCACATGGTCTTTCATAGC  826
      ||||||||||||||||||||||||||||||||
seq2  GTTGTCCAATCTGGCACATGGTCTTTCATAGC  816

seq1: chr18_31601829_31602993
seq2: B6Ng01-176L17.g_66_1223

seq1  GAATTCAAGCCACAGAAAATCTATTCTGCATCCAACAATTATTCTGGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGCCACAGAAAATCTATTCTGCATCCAACAATTATTCTGGACC  50

seq1  AGGGTCATGATGGAGTTAGAATTCTTGTCCTTTCATAGTCAAAGTCTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCATGATGGAGTTAGAATTCTTGTCCTTTCATAGTCAAAGTCTCTT  100

seq1  TTCAATCTAAGGAGAAAATAAATAAATTTAAGTACTTGGGAGAACTGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCTAAGGAGAAAATAAATAAATTTAAGTACTTGGGAGAACTGACT  150

seq1  CTAACTTTAAAACTTGGTTTTAGGGAGTAACATAGATCCCTTTACTGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTTTAAAACTTGGTTTTAGGGAGTAACATAGATCCCTTTACTGAAG  200

seq1  GCTATTTATGCTTAGTTTTATATGAAAGACATTACCTAAGACTGCTAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTATGCTTAGTTTTATATGAAAGACATTACCTAAGACTGCTAAGA  250

seq1  CTGTAACGTTCAAGCTTTAACTACAACTAACAAAACAATAACATGGGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACGTTCAAGCTTTAACTACAACTAACAAAACAATAACATGGGACT  300

seq1  TGCTTATAATTAAGAACAGCTAAATAAAAATGCATCAAAAAAGAGCTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATAATTAAGAACAGCTAAATAAAAATGCATCAAAAAAGAGCTAAA  350

seq1  GTTGAGAAAAACCACCTAAAACTAAACAGTTTACCAAAAAAGCACACCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGAAAAACCACCTAAAACTAAACAGTTTACCAAAAAAGCACACCAA  400

seq1  AGAAAGCAAAACAACAACCAGGGAGCTATTTGATCCTCATGGGCCCCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCAAAACAACAACCAGGGAGCTATTTGATCCTCATGGGCCCCAGT  450

seq1  CAGTCAGGTGCCTCACACAAGCTGTGCAACTCTCTGGGCCTGAATTCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGGTGCCTCACACAAGCTGTGCAACTCTCTGGGCCTGAATTCCAC  500

seq1  TATTGTCAATACAAGACAGGAAGATGATTACAAAGTGTTCTAAAGATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCAATACAAGACAGGAAGATGATTACAAAGTGTTCTAAAGATATT  550

seq1  TTTAGCTCAAAAATATTGTGATTTTTAAAAAACATAAATAATGTGATTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTCAAAAATATTGTGATTTTTAAAAAACATAAATAATGTGATTGT  600

seq1  TGTTTTCTTAAGTTGCGGCATTAGAACAAATTGTTCTGAAATACGAAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTTAAGTTGCGGCATTAGAACAAATTGTTCTGAAATACGAAGAT  650

seq1  TAGGAACTGTGAAGTTTATTTAAAGCAGAAAAGGATTCTCTTTGCTAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAACTGTGAAGTTTATTTAAAGCAGAAAAGGATTCTCTTTGCTAAAT  700

seq1  TGATATCATGTCATTTCCTAATTATCCAAGAGCTATCAAAGGAGTCCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATCATGTCATTTCCTAATTATCCAAGAGCTATCAAAGGAGTCCATG  750

seq1  TCAGAGGGCAGGGTAACACACTTCCTGTATGCAGGAGAAAAAAAATGGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGGCAGGGTAACACACTTCCTGTATGCAGGAGAAAAAAAATGGAC  800

seq1  ATTCGGAAGTCAACATAACAGAATGACCCTTGTTCAAAAGCAATTTCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGGAAGTCAACATAACAGAATGACCCTTGTTCAAAAGCAATTTCATG  850

seq1  AAAAGTACATTCAAATCCCACATCCTGAGAAGGAACTGGCTTACTTTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTACATTCAAATCCCACATCCTGAGAAGGAACTGGCTTACTTTTTA  900

seq1  ATTTCGGTTTCAAATTCAGTTACTCTGAACTGAAACACTTTAATAACATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCGGTTTCAAATTCAGTTACTCTGAACTGAAACACTTTAATAACATA  950

seq1  TGCTAAGAGACACACACATGAATTTTAAAGTCGCAGCCTTTTTCAAACTA  1000
      |||||||||||||||||||||| ||| |||||||||||||||||||||||
seq2  TGCTAAGAGACACACACATGAAATTTTAAGTCGCAGCCTTTTTCAAACTA  1000

seq1  TTTTAATAGAAATTTTAAAAATACCTGTTACATAAATGATGTATAAGGTA  1050
      |||||||||||||||||||||||||||||||||||||||||||| | |||
seq2  TTTTAATAGAAATTTTAAAAATACCTGTTACATAAATGATGTATTAAGTA  1050

seq1  TCATGC-AATGCTTTCTCTTATTTTTTTATCACAAAGATTCC-TTGAGCA  1098
      |||||| ||||| |||||   | |||| |||||||||||||| |||||| 
seq2  TCATGCAAATGC-TTCTC---TATTTTGATCACAAAGATTCCTTTGAGCC  1096

seq1  TTTCAATTGTGGATTAAACTTCCTTTTGCCTTCTCTATTCTCTTGTTCTC  1148
       ||| | ||| |||||||||||| ||||| ||| ||| || |||| ||||
seq2  ATTCCA-TGT-GATTAAACTTCCCTTTGCATTC-CTAATC-CTTG-TCTC  1141

seq1  AGCTTACTATTACCCAC  1165
      ||||  |||||||||||
seq2  AGCTACCTATTACCCAC  1158