BAC Information

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BAC

Clone NameB6Ng01-177O13
Chromosome18 (Build37)
Map Location 42,836,049 - 43,021,658
singlet/doubletdoublet
Overlap genePpp2r2b
Upstream geneLOC100041988, LOC100041997, Prelid2, Gm851, Sh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27, Pou4f3, LOC100042767, LOC100042027, Tcerg1, Gpr151, LOC100042037
Downstream geneLOC100042046, LOC100042051, EG666594, Stk32a, Dpysl3, LOC100042074, LOC100042807, Jakmip2, Spink3, Scgb3a2, Gm94
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177O13.bB6Ng01-177O13.g
ACCGA005046GA005047
length8181,020
definitionB6Ng01-177O13.b B6Ng01-177O13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,836,049 - 42,836,866)(43,020,644 - 43,021,658)
sequence
gaattccctgtctcatttttgattcaggatcccttattgatttggaactt
accagcttgtctaagttggctggctactgaaccaccaggattacaagcac
tcactgtcatgtctggcttttgtgcatgggctctgcagatcaaactcagg
tcttcatgccttcacaactgcaaacactttactgagccatctctctagcc
tccctatccttggctctccacctcaccctccacagctagttgataagcag
acctactaatttatacccctggcattgcttcagaccatgctatttgacat
cttaagaatgttgttctcatggatggacctggagggcatcatcctgagtg
aggtaacccaatcacaaaagaactcacacaatatgtactcactgataagt
gaatattagcccagaaacttagaatacccaagatacaagatacaatttgc
aaaacacatgaaactcaagaagaacgaagaccaaagtgtggacactttgc
cccttcttagaattgggaacaaaacacccatggaaggagttacagagaca
aagtttggagctgagacgaaaggatggaccacttagagactgccatactc
aggatccatcccataatcagcctccaaatgctgataccattgcatacact
agcaagattttgctgaaaggaccctgatatagctgtctcttgtgaggcta
tgctggggcctagcaaacacataagtggatgctcacagtcagctattgga
tggatcacagggcccccaatggaggagctagagaaagtacccaaggagct
aaaggggtctgcaaccct
gaattccaggggtgggagggtcctcttctgagagtttggcttgcaataaa
acaggatcatcatgtcttcagtgttttatgttttgttttaaagtaaaaga
gaaaaaaagtagatgatcctctttgtccatctactcactctctggtgtta
tctccatctggctgtctcaaagctttgagcctcccagctctgagtaaatg
tacaccagcagctattaatagctgaactctacaaccgtctgctgccacag
atggaattggagcttttggagaggaaaatccataaaaactcatcacagaa
agcagctcagccctttgttacctaatatgattaagctgtctataaataag
ggatgctccgagaagcctggcactatcccttgtgtggggcttgtgaacct
cacctgccaaactgttcattgatagacaagtctcttcagggtggtgttga
atggttctgaatatttatctaaggactaaataaaaaattgaaagagaatg
cacttcggaggtggaaggaaagttaacttgaaggtaaagcagcattccac
catagcaaagaaaaaggaggaaataaaatctttgagttaaagaatgtata
tcataggtcgtaaaaacccatggagatattatagagggccgattcaagaa
ggtgcttccttgaacgaccccatttggggggaagtatctttgatggattg
tgacaagctcttcaagtaggccagggagacttccaattctttttcccctg
agccaggcagagactgcccgtcttgaagaattgtctttattgtttctatt
taaagggtataggaagacgctgggaaaagggatttagagtgtatttctgg
gcctctctttctcagtgatccctttgcttcctcagtatttaccaagagaa
tttaaggctttatcaaatcagattaactgctgtgtcatcggattaattct
gcaatatcagagatggtgaatgaagctagggaactgggaggacatctgtg
cgtgaagttgatcttctaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_42836049_42836866
seq2: B6Ng01-177O13.b_47_864

seq1  GAATTCCCTGTCTCATTTTTGATTCAGGATCCCTTATTGATTTGGAACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGTCTCATTTTTGATTCAGGATCCCTTATTGATTTGGAACTT  50

seq1  ACCAGCTTGTCTAAGTTGGCTGGCTACTGAACCACCAGGATTACAAGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTTGTCTAAGTTGGCTGGCTACTGAACCACCAGGATTACAAGCAC  100

seq1  TCACTGTCATGTCTGGCTTTTGTGCATGGGCTCTGCAGATCAAACTCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTCATGTCTGGCTTTTGTGCATGGGCTCTGCAGATCAAACTCAGG  150

seq1  TCTTCATGCCTTCACAACTGCAAACACTTTACTGAGCCATCTCTCTAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATGCCTTCACAACTGCAAACACTTTACTGAGCCATCTCTCTAGCC  200

seq1  TCCCTATCCTTGGCTCTCCACCTCACCCTCCACAGCTAGTTGATAAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTATCCTTGGCTCTCCACCTCACCCTCCACAGCTAGTTGATAAGCAG  250

seq1  ACCTACTAATTTATACCCCTGGCATTGCTTCAGACCATGCTATTTGACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTAATTTATACCCCTGGCATTGCTTCAGACCATGCTATTTGACAT  300

seq1  CTTAAGAATGTTGTTCTCATGGATGGACCTGGAGGGCATCATCCTGAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGAATGTTGTTCTCATGGATGGACCTGGAGGGCATCATCCTGAGTG  350

seq1  AGGTAACCCAATCACAAAAGAACTCACACAATATGTACTCACTGATAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAACCCAATCACAAAAGAACTCACACAATATGTACTCACTGATAAGT  400

seq1  GAATATTAGCCCAGAAACTTAGAATACCCAAGATACAAGATACAATTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTAGCCCAGAAACTTAGAATACCCAAGATACAAGATACAATTTGC  450

seq1  AAAACACATGAAACTCAAGAAGAACGAAGACCAAAGTGTGGACACTTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACATGAAACTCAAGAAGAACGAAGACCAAAGTGTGGACACTTTGC  500

seq1  CCCTTCTTAGAATTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTTAGAATTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACA  550

seq1  AAGTTTGGAGCTGAGACGAAAGGATGGACCACTTAGAGACTGCCATACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGGAGCTGAGACGAAAGGATGGACCACTTAGAGACTGCCATACTC  600

seq1  AGGATCCATCCCATAATCAGCCTCCAAATGCTGATACCATTGCATACACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCCATCCCATAATCAGCCTCCAAATGCTGATACCATTGCATACACT  650

seq1  AGCAAGATTTTGCTGAAAGGACCCTGATATAGCTGTCTCTTGTGAGGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGATTTTGCTGAAAGGACCCTGATATAGCTGTCTCTTGTGAGGCTA  700

seq1  TGCTGGGGCCTAGCAAACACATAAGTGGATGCTCACAGTCAGCTATTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGGCCTAGCAAACACATAAGTGGATGCTCACAGTCAGCTATTGGA  750

seq1  TGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCT  800

seq1  AAAGGGGTCTGCAACCCT  818
      ||||||||||||||||||
seq2  AAAGGGGTCTGCAACCCT  818

seq1: chr18_43020644_43021658
seq2: B6Ng01-177O13.g_65_1084 (reverse)

seq1  GTTAAAAGATCAACTTCACGCACAGTATGTGCTTCCAGTCCCCTAGCTTC  50
      |||| |||||||||||||||||||| |||| || ||||| ||||||||||
seq2  GTTAGAAGATCAACTTCACGCACAG-ATGTCCTCCCAGTTCCCTAGCTTC  49

seq1  A-TCA-CATCTCTGATATTACCAAGAATAAAACAGATGACACAAGCAGTT  98
      | ||| ||||||||||||| |  ||||| || | |||||||| |||||||
seq2  ATTCACCATCTCTGATATTGC--AGAATTAATCCGATGACAC-AGCAGTT  96

seq1  AATCTGATTTGATAAAGCCTTTAATTCTCTTGGTAAATACTGAGG-AGCA  147
      ||||||||||||||||||||| ||||||||||||||||||||||| ||||
seq2  AATCTGATTTGATAAAGCCTTAAATTCTCTTGGTAAATACTGAGGAAGCA  146

seq1  AAGGGATCACTGAGAAAGAGA-GCCCAGAAATACACTCT-AATCCCTTTT  195
      ||||||||||||||||||||| ||||||||||||||||| ||||||||||
seq2  AAGGGATCACTGAGAAAGAGAGGCCCAGAAATACACTCTAAATCCCTTTT  196

seq1  -CCAGCGTCTTCCTATACCC-TTAAATAGAAACAAT-AAGACAATTCTTC  242
       ||||||||||||||||||| ||||||||||||||| |||||||||||||
seq2  CCCAGCGTCTTCCTATACCCTTTAAATAGAAACAATAAAGACAATTCTTC  246

seq1  AAGACGGGCAGTCTCTGCCTGGCTCAGGGGAAAAAGAATTGGAAGTCTCC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACGGGCAGTCTCTGCCTGGCTCAGGGGAAAAAGAATTGGAAGTCTCC  296

seq1  CTGGCCTACTTGAAGAGCTTGTCACAATCCATCAAAGATACTT-CCCCCA  341
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTGGCCTACTTGAAGAGCTTGTCACAATCCATCAAAGATACTTCCCCCCA  346

seq1  AATGGGGTCGTTCAAGGAAGCACCTTCTTGAATCGGCCCTCTATAATATC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGTCGTTCAAGGAAGCACCTTCTTGAATCGGCCCTCTATAATATC  396

seq1  TCCATGGGTTTTTACGACCTATGATATACATTCTTTAACTCAAAGATTTT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGGTTTTTACGACCTATGATATACATTCTTTAACTCAAAGATTTT  446

seq1  ATTTCCTCCTTTTTCTTTGCTATGGTGGAATGCTGCTTTACCTTCAAGTT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTCCTTTTTCTTTGCTATGGTGGAATGCTGCTTTACCTTCAAGTT  496

seq1  AACTTTCCTTCCACCTCCGAAGTGCATTCTCTTTCAATTTTTTATTTAGT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCCTTCCACCTCCGAAGTGCATTCTCTTTCAATTTTTTATTTAGT  546

seq1  CCTTAGATAAATATTCAGAACCATTCAACACCACCCTGAAGAGACTTGTC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGATAAATATTCAGAACCATTCAACACCACCCTGAAGAGACTTGTC  596

seq1  TATCAATGAACAGTTTGGCAGGTGAGGTTCACAAGCCCCACACAAGGGAT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATGAACAGTTTGGCAGGTGAGGTTCACAAGCCCCACACAAGGGAT  646

seq1  AGTGCCAGGCTTCTCGGAGCATCCCTTATTTATAGACAGCTTAATCATAT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCAGGCTTCTCGGAGCATCCCTTATTTATAGACAGCTTAATCATAT  696

seq1  TAGGTAACAAAGGGCTGAGCTGCTTTCTGTGATGAGTTTTTATGGATTTT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAACAAAGGGCTGAGCTGCTTTCTGTGATGAGTTTTTATGGATTTT  746

seq1  CCTCTCCAAAAGCTCCAATTCCATCTGTGGCAGCAGACGGTTGTAGAGTT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCAAAAGCTCCAATTCCATCTGTGGCAGCAGACGGTTGTAGAGTT  796

seq1  CAGCTATTAATAGCTGCTGGTGTACATTTACTCAGAGCTGGGAGGCTCAA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATTAATAGCTGCTGGTGTACATTTACTCAGAGCTGGGAGGCTCAA  846

seq1  AGCTTTGAGACAGCCAGATGGAGATAACACCAGAGAGTGAGTAGATGGAC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGAGACAGCCAGATGGAGATAACACCAGAGAGTGAGTAGATGGAC  896

seq1  AAAGAGGATCATCTACTTTTTTTCTCTTTTACTTTAAAACAAAACATAAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGATCATCTACTTTTTTTCTCTTTTACTTTAAAACAAAACATAAA  946

seq1  ACACTGAAGACATGATGATCCTGTTTTATTGCAAGCCAAACTCTCAGAAG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAAGACATGATGATCCTGTTTTATTGCAAGCCAAACTCTCAGAAG  996

seq1  AGGACCCTCCCACCCCTGGAATTC  1015
      ||||||||||||||||||||||||
seq2  AGGACCCTCCCACCCCTGGAATTC  1020