BAC Information

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BAC

Clone NameB6Ng01-178F18
Chromosome3 (Build37)18 (Build37)
Map Location 87,918,427 - 87,919,48464,716,963 - 64,717,068
singlet/doubletsingletsinglet
Overlap geneIqgap3
Upstream geneKirrel1, LOC100042355, Msr2, Cd5l, Fcrl1, Fcrl5, Etv3, EG546801, Arhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24
Downstream geneMef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178F18.bB6Ng01-178F18.g
ACCGA005370GA005371
length1,076190
definitionB6Ng01-178F18.b B6Ng01-178F18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(87,918,427 - 87,919,484)(64,716,963 - 64,717,068)
sequence
gaattcacctcacgcctctcagtcggaatgaagcagcacggcgggctggg
ctggtcatctgcaccagttagcggcaccagctccctgaaccagctctcca
ctcattcacacgctgtcgctgtcaacaagagttggagacacaagcagaga
gcttcccagagggagagggcagacatgagggtggctaccaggaggaagtg
aatacttgggctgagggatcagaggaggccagtttaggggagagtattct
cagggacaccgcctccccctggaccctccctctctctgcatcctgggcat
ccccaacagtccagacctggggcaggatccacttatccttggctctttgg
cctaccctgtccagacctttcctggtcctcaccctgcccttccctgcagc
accaaacagatgctggccgacctcatccagttccaccctggggagtccct
ggaagagatcctgacctcctcggctcccagagagcatgtgagtagccagg
acagtcatgacagctaagccttagacaccacctcacccttagtctgccac
agagaccagtgggcacatagaaggccaagcctcagaccttgatgccaagg
gtcacaagctgaaggagcagcctaagcagctctctcgctcgctctttctc
tctctttctctctctttctctctttctctgtctctctctcagtctctccc
tgtaccgtgcaggggttaggacagtgctgaggggcagtctgttctgagaa
ccacataagggaattgctctggaaatggaggctgttggagggtttggagg
caagagaggatgccaggtggacttgctgtaggggttggcgtaagggcaaa
accaggagtttagtttccctgagtaaaagtgggtagttggcaaggcagag
gcatgggcccaaaacagttagggcaggcttccacctacactttatgccca
cagagagcaccatgctggggtggggaagctgtttagcagccagttgtctc
ctttggtctatacaaatgtcttggggccactatagatgatcctttaagaa
ctctttctatgtctctgggttttttt
agctgaagagaggtttgtgagaaggaaagtgtaagaagccttgagagctg
cttgtacacacttttgatcccagtagaagcagacagatctctggaaattc
agagctagtctgatatagtagtgagttccaggagagcagagagaacctgt
cccaaacagcaggaagaaagaaagggagggagggagggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_87918427_87919484
seq2: B6Ng01-178F18.b_43_1118

seq1  GAATTCACCTCACGCCTCTCAGTCGGAATGAAGCAGCACGGCGGGCTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTCACGCCTCTCAGTCGGAATGAAGCAGCACGGCGGGCTGGG  50

seq1  CTGGTCATCTGCACCAGTTAGCGGCACCAGCTCCCTGAACCAGCTCTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCATCTGCACCAGTTAGCGGCACCAGCTCCCTGAACCAGCTCTCCA  100

seq1  CTCATTCACACGCTGTCGCTGTCAACAAGAGTTGGAGACACAAGCAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCACACGCTGTCGCTGTCAACAAGAGTTGGAGACACAAGCAGAGA  150

seq1  GCTTCCCAGAGGGAGAGGGCAGACATGAGGGTGGCTACCAGGAGGAAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCCAGAGGGAGAGGGCAGACATGAGGGTGGCTACCAGGAGGAAGTG  200

seq1  AATACTTGGGCTGAGGGATCAGAGGAGGCCAGTTTAGGGGAGAGTATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTGGGCTGAGGGATCAGAGGAGGCCAGTTTAGGGGAGAGTATTCT  250

seq1  CAGGGACACCGCCTCCCCCTGGACCCTCCCTCTCTCTGCATCCTGGGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACACCGCCTCCCCCTGGACCCTCCCTCTCTCTGCATCCTGGGCAT  300

seq1  CCCCAACAGTCCAGACCTGGGGCAGGATCCACTTATCCTTGGCTCTTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACAGTCCAGACCTGGGGCAGGATCCACTTATCCTTGGCTCTTTGG  350

seq1  CCTACCCTGTCCAGACCTTTCCTGGTCCTCACCCTGCCCTTCCCTGCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCCTGTCCAGACCTTTCCTGGTCCTCACCCTGCCCTTCCCTGCAGC  400

seq1  ACCAAACAGATGCTGGCCGACCTCATCCAGTTCCACCCTGGGGAGTCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACAGATGCTGGCCGACCTCATCCAGTTCCACCCTGGGGAGTCCCT  450

seq1  GGAAGAGATCCTGACCTCCTCGGCTCCCAGAGAGCATGTGAGTAGCCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGATCCTGACCTCCTCGGCTCCCAGAGAGCATGTGAGTAGCCAGG  500

seq1  ACAGTCATGACAGCTAAGCCTTAGACACCACCTCACCCTTAGTCTGCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCATGACAGCTAAGCCTTAGACACCACCTCACCCTTAGTCTGCCAC  550

seq1  AGAGACCAGTGGGCACATAGAAGGCCAAGCCTCAGACCTTGATGCCAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCAGTGGGCACATAGAAGGCCAAGCCTCAGACCTTGATGCCAAGG  600

seq1  GTCACAAGCTGAAGGAGCAGCCTAAGCAGCTCTCTCGCTCGCTCTTTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAAGCTGAAGGAGCAGCCTAAGCAGCTCTCTCGCTCGCTCTTTCTC  650

seq1  TCTCTTTCTCTCTCTTTCTCTCTTTCTCTGTCTCTCTCTCAGTCTCTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCTCTCTCTTTCTCTCTTTCTCTGTCTCTCTCTCAGTCTCTCCC  700

seq1  TGTACCGTGCAGGGGTTAGGACAGTGCTGAGGGGCAGTCTGTTCTGAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCGTGCAGGGGTTAGGACAGTGCTGAGGGGCAGTCTGTTCTGAGAA  750

seq1  CCACATAAGGGAATTGCTCTGGAAATGGAGGCTGTTGGAGGGTTTGGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATAAGGGAATTGCTCTGGAAATGGAGGCTGTTGGAGGGTTTGGAGG  800

seq1  CAAGAGAGGATGCCAGGTGGACTTGCTGTAGGGGTTGGCGTAAGGGCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAGGATGCCAGGTGGACTTGCTGTAGGGGTTGGCGTAAGGGCAAA  850

seq1  ACCAGGAG-TTAG-TTCCCTGAGTAAAAGT-GGTAG-TGGC-AGGCAGAG  895
      |||||||| |||| |||||||||||||||| ||||| |||| ||||||||
seq2  ACCAGGAGTTTAGTTTCCCTGAGTAAAAGTGGGTAGTTGGCAAGGCAGAG  900

seq1  GCAT-GGCCCAAAACAGTTA-GGCAGGC-TCCACCTACACTTTATGCCCA  942
      |||| ||||||||||||||| ||||||| |||||||||||||||||||||
seq2  GCATGGGCCCAAAACAGTTAGGGCAGGCTTCCACCTACACTTTATGCCCA  950

seq1  CAGAGAGCACCATGCT-GGGTTGGGAAGCTG-TTAGCAGCCAG-TGTCTC  989
      |||||||||||||||| |||| ||||||||| ||||||||||| ||||||
seq2  CAGAGAGCACCATGCTGGGGTGGGGAAGCTGTTTAGCAGCCAGTTGTCTC  1000

seq1  C-TTGGTCTATACAAATG-CTTTGGGCCACCATAGATGATCC-TTAAG-A  1035
      | |||||||||||||||| ||| ||||||| ||||||||||| ||||| |
seq2  CTTTGGTCTATACAAATGTCTTGGGGCCACTATAGATGATCCTTTAAGAA  1050

seq1  CTC-TTCTATG--TCTGGGTTTTTTT  1058
      ||| |||||||  |||||||||||||
seq2  CTCTTTCTATGTCTCTGGGTTTTTTT  1076

seq1: chr18_64716963_64717068
seq2: B6Ng01-178F18.g_185_261 (reverse)

seq1  CTCCCTCCCTCCCTCCCTTTCTTTCTTTTTTTTTTTTTCTTTTCTGGAGG  50
      |||||||||||||||||||||||||||  |                   |
seq2  CTCCCTCCCTCCCTCCCTTTCTTTCTTCCT-------------------G  31

seq1  GGGGTTGAGACAGGGTTTCTCTGTGTAGTCTTGGCTGTCCTGGAACTCAC  100
        | ||| |||||| | |||||           ||| |||||||||||||
seq2  CTGTTTGGGACAGGTTCTCTCT-----------GCTCTCCTGGAACTCAC  70

seq1  T-CTATA  106
      | |||||
seq2  TACTATA  77