BAC Information

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BAC

Clone NameB6Ng01-178H07
Chromosome18 (Build37)
Map Location 69,592,511 - 69,671,324
singlet/doubletdoublet
Overlap geneTcf4
Upstream geneLOC100043380, EG225681
Downstream geneCcdc68, Rab27b, 2310002L13Rik, 4930503L19Rik, Stard6, Poli
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178H07.bB6Ng01-178H07.g
ACCGA005438GA005439
length1121,153
definitionB6Ng01-178H07.b B6Ng01-178H07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,671,213 - 69,671,324)(69,592,511 - 69,593,656)
sequence
ttaacaatcaagaggaggacccttcttaaaaactagttcttggggcaggt
ggaataaggttcagaatattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtctgtgt

cggaattatggccaatgttggcagttctgttaggagaggtgtggtttggc
cagaatccaaggcttttgtctgtctcccaagagatgacatatatatttca
aaacttcatgtcctttcccatttcaatacccatcctgtagtcttgacagt
gtcctttactctgggctttgggcaagctcttgaatgaatgaagtagataa
caaagattgctgagtataaggcagccaagctatgtgagctccaactgcca
agactcccatgctgggtagacagattgtatgtgggggccagaagtgtctc
ctacttggtacaaagataaacccaaaagccttgacttaggactaactgtc
tcaccactatttcaccaccatagatctggcatgtgtgattaatgcctaga
tagtaaaagggaagctggatcgtctgtaggtctaaaggttgtaggtgaga
tttatttaaaagtaattttaaaagagtttagaagtctctttctgtgagga
ataacaaaattagctccacgactgttatcttcctgatcctttatgtgtgt
acatcaaaggaagccacaaaaaacttaaaaagctctgtacagaaaggaca
ccctaggagaacatgagtattgatttcaagtggtgtggaagtgagcaaga
tggaagttcgagagcaagtctttgaggtacaacccgagacactggccacc
tccgccgttatccacaccttttccttttcttggctgattactggatctga
tggcagtttgatgtgccgttcagccctcagattctctatggcttgatctg
ggctgaattgagctcagatcacattcatgtacagaagattctcgagggac
cctggtccctagatgccctcaggatggagatggttttgattttcttgagt
ttaataccacagcacacgctaataatttgtggcaaccggaacaggccgtt
tgtttaccagttccgtggaataggcagcgatttcggcagcgtgaatgtct
gtgattcttaatttctgaaagcctcctttttttgattagcgacgctgccg
gcgcacacttactcatcttcctagcctgctgctctgtcattccgctcttc
ggacttaagcttgggcattccagaactgtaactctgaaacctgaagttag
gtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_69671213_69671324
seq2: B6Ng01-178H07.b_52_163 (reverse)

seq1  ACACAGACACACACACACACACACACACACACACACACACACAATATTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGACACACACACACACACACACACACACACACACACACAATATTCT  50

seq1  GAACCTTATTCCACCTGCCCCAAGAACTAGTTTTTAAGAAGGGTCCTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTATTCCACCTGCCCCAAGAACTAGTTTTTAAGAAGGGTCCTCCT  100

seq1  CTTGATTGTTAA  112
      ||||||||||||
seq2  CTTGATTGTTAA  112


seq1: chr18_69592511_69593656
seq2: B6Ng01-178H07.g_60_1210

seq1  GAATTATGGCCAATGTTGGCAGTTCTGTTAGGAGAGGTGTGGTTTGGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATGGCCAATGTTGGCAGTTCTGTTAGGAGAGGTGTGGTTTGGCCA  50

seq1  GAATCCAAGGCTTTTGTCTGTCTCCCAAGAGATGACATATATATTTCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCAAGGCTTTTGTCTGTCTCCCAAGAGATGACATATATATTTCAAA  100

seq1  ACTTCATGTCCTTTCCCATTTCAATACCCATCCTGTAGTCTTGACAGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATGTCCTTTCCCATTTCAATACCCATCCTGTAGTCTTGACAGTGT  150

seq1  CCTTTACTCTGGGCTTTGGGCAAGCTCTTGAATGAATGAAGTAGATAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACTCTGGGCTTTGGGCAAGCTCTTGAATGAATGAAGTAGATAACA  200

seq1  AAGATTGCTGAGTATAAGGCAGCCAAGCTATGTGAGCTCCAACTGCCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTGCTGAGTATAAGGCAGCCAAGCTATGTGAGCTCCAACTGCCAAG  250

seq1  ACTCCCATGCTGGGTAGACAGATTGTATGTGGGGGCCAGAAGTGTCTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCATGCTGGGTAGACAGATTGTATGTGGGGGCCAGAAGTGTCTCCT  300

seq1  ACTTGGTACAAAGATAAACCCAAAAGCCTTGACTTAGGACTAACTGTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTACAAAGATAAACCCAAAAGCCTTGACTTAGGACTAACTGTCTC  350

seq1  ACCACTATTTCACCACCATAGATCTGGCATGTGTGATTAATGCCTAGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTATTTCACCACCATAGATCTGGCATGTGTGATTAATGCCTAGATA  400

seq1  GTAAAAGGGAAGCTGGATCGTCTGTAGGTCTAAAGGTTGTAGGTGAGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGGGAAGCTGGATCGTCTGTAGGTCTAAAGGTTGTAGGTGAGATT  450

seq1  TATTTAAAAGTAATTTTAAAAGAGTTTAGAAGTCTCTTTCTGTGAGGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAAAGTAATTTTAAAAGAGTTTAGAAGTCTCTTTCTGTGAGGAAT  500

seq1  AACAAAATTAGCTCCACGACTGTTATCTTCCTGATCCTTTATGTGTGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATTAGCTCCACGACTGTTATCTTCCTGATCCTTTATGTGTGTAC  550

seq1  ATCAAAGGAAGCCACAAAAAACTTAAAAAGCTCTGTACAGAAAGGACACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGGAAGCCACAAAAAACTTAAAAAGCTCTGTACAGAAAGGACACC  600

seq1  CTAGGAGAACATGAGTATTGATTTCAAGTGGTGTGGAAGTGAGCAAGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGAACATGAGTATTGATTTCAAGTGGTGTGGAAGTGAGCAAGATG  650

seq1  GAAGTTCGAGAGCAAGTCTTTGAGGTACAACCCGAGACACTGGCCACCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCGAGAGCAAGTCTTTGAGGTACAACCCGAGACACTGGCCACCTC  700

seq1  CGCCGTTATCCACACCTTTTCCTTTTCTTGGCTGATTACTGGATCTGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCGTTATCCACACCTTTTCCTTTTCTTGGCTGATTACTGGATCTGATG  750

seq1  GCAGTTTGATGTGCCGTTCAGCCCTCAGATTCTCTATGGCTTGATCTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTGATGTGCCGTTCAGCCCTCAGATTCTCTATGGCTTGATCTGGG  800

seq1  CTGAATTGAGCTCAGATCACATTCATGTACAGAAGATTCTCGAGGGACCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTGAGCTCAGATCACATTCATGTACAGAAGATTCTCGAGGGACCC  850

seq1  TGGTCCCTAGATGCCCTCAGGATGGAGATGGTTTTGA-TTTCTTGAGTTT  899
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGGTCCCTAGATGCCCTCAGGATGGAGATGGTTTTGATTTTCTTGAGTTT  900

seq1  AATACCACAGCACACGCT-ATAATTTGTGGCAACCGGAACAGG-CGTTTG  947
      |||||||||||||||||| |||||||||||||||||||||||| ||||||
seq2  AATACCACAGCACACGCTAATAATTTGTGGCAACCGGAACAGGCCGTTTG  950

seq1  TTTAACAAGTTCCGTGG-ATAGGCAGCGA-TTCGGCAGCGTGAATGTCTG  995
      ||| || |||||||||| ||||||||||| ||||||||||||||||||||
seq2  TTT-ACCAGTTCCGTGGAATAGGCAGCGATTTCGGCAGCGTGAATGTCTG  999

seq1  TGATTCTAAATTTCTGAAAAGCTCC-TTTTTTGATTAAGCACGCTGCCCG  1044
      ||||||| |||||||||||  |||| |||||||||||   |||||||| |
seq2  TGATTCTTAATTTCTGAAAGCCTCCTTTTTTTGATTAGCGACGCTGCCGG  1049

seq1  CCGCCACACTTACTCATCTTCTCAGGCTGCTGCTCTGTCATCCCGCTCCT  1094
      |   |||||||||||||||||  || ||||||||||||||| |||||| |
seq2  C--GCACACTTACTCATCTTCCTAGCCTGCTGCTCTGTCATTCCGCTCTT  1097

seq1  CGGACTT-AGCTT-GGCATCCCAGACTTGTAACTCTGAGACCTGAAGGTA  1142
      ||||||| ||||| ||||| |||||  ||||||||||| |||||||| ||
seq2  CGGACTTAAGCTTGGGCATTCCAGAACTGTAACTCTGAAACCTGAAGTTA  1147

seq1  GGTG  1146
      ||||
seq2  GGTG  1151


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