BAC Information

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BAC

Clone NameB6Ng01-178K01
Chromosome18 (Build37)
Map Location 17,670,310 - 17,745,310
singlet/doubletdoublet
Overlap genenone
Upstream geneCdh2, LOC665519, 1700001G01Rik, 4921533I20Rik
Downstream geneLOC100040647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178K01.bB6Ng01-178K01.g
ACCGA005565GA005566
length1,107961
definitionB6Ng01-178K01.b B6Ng01-178K01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,744,204 - 17,745,310)(17,670,310 - 17,670,846)
sequence
gaattcaactcccaaccaccaccatttgtacacttacagtgtactcacat
acataaagtaaataaataaatcttttctttaaaaaaaagagttgctgtgg
ctatgatgtctgttcataccaataaaaccctaacacttatcagataaaga
tgtttgctgtgaaaccatacaacctgagtttgattgccaggacctacgtt
ttggaaggagaaaaatgacttctacaattgttctctgtcttccttgcatg
gattgctgtttatgtgtacccacctctacatatgtgtgtaccacatgtaa
agaaatatgtttttatgtctattatttgaaaaagaggaaagatatctctt
ccatttttattgtatccatcagcaatcatacctagtatgcaacacacaac
agatatctctgttaaagtgctttgaattaaaacacaaggaatgactggaa
gcagtaagtgataagccatcatattgttgccccaatattgtcataacatg
tatagaaaagcatgtaaacttctatattactagagatcactaaggtcaaa
attacaccagttttcttgcatattttataattttgtcactcgaatattct
ctccacctagtaacattgatgcatgtctttatgctgtagaggaatgcaat
tattgtggttcagaaaatttataattacaaacattattatttctttaggt
caaaacaaaggtataatattttctagagcttcgttatgttattggtgaat
gttatttaaagacaaaattagctccctaattttgcttagtagcaaaggtg
gcaggatgctaatgaagtctacttcagtttatggacaatctaggcaggat
agcttactcaacctgcaaattatttgcaaatgtatgaaatgtttatagct
gcagttgaaataccatattaagatgtttctggggtcacattaaaatgact
gagtggtttaaaactttgtccttgtagtttcttgcagaaagaaaagtcag
ataaacagtttggcattttgcaattgtgtatgtgtgagatggcaaatatt
tttatttatatttgagtacattttcatatttgcctgtatcctctggtgtt
ttggggg

gaattcattacttggaaatcatattgaaagtacttgcgagacaaccgacc
acattcctggtgagagcacaggggtccgcctggcctgagaggcttctgcc
tcactttccgtgggggccaccttggtttctggactctgcggcgggcggtc
tgcgagtgagagtgtggaacacagaggcttctggaacgggcgagagccac
agagcctctgaggcggcgtcatttccggctccagacaaccggccatcttc
ctggtcagagcacaggtgtccacccggcccgagaggcttctgcctcactt
tcctcgggggccaccttggttccgggactccacggaaagtagtctacaca
ggtgagagtgtggactactgaaacaaaggcttctgtgacaggccaaagca
acacagcttctaggaaagatcctgttttgggccttcatcttcggccagga
ggaggtccaaacaccagataactgtgcacctccctgaaagaggagacctt
gcctgcagagactgctctgaccactgaaactcagggaagagagctagtct
ccctggtctgctgatagagagtaacaaaatcaccagaggaacaatctcta
aacagagacagctataacaactaactccagagattaccagatggcgaaag
gtaaacgtaagaatcctactaacagaaaccaggaccactcacaatcatca
gaacccaggactcccacttcgcccagtccagggcaccccaacacacctga
aaagctagatctggatttaaaagcatatctcatgatgatggtagaggaca
tcaagaaaggacttaaataactcacttaaagaaatacaggagaacactgc
taaacaagtagaagacattaaagaggaaacacaaaaatcccctaaagaat
tgcaggaaaacataacccaaacaggtaggagacatttaagaggaaacaca
aatccctttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_17744204_17745310
seq2: B6Ng01-178K01.b_41_1147 (reverse)

seq1  CCCCCCAAACA-CAGA-GATACAGGCAAATATGAAAATGTACTCAAATAT  48
      ||||| ||||| |||| |||||||||||||||||||||||||||||||||
seq2  CCCCCAAAACACCAGAGGATACAGGCAAATATGAAAATGTACTCAAATAT  50

seq1  AAATAAAAATATTTGCCATCTCACACATACACAATTGCAAAATGCCAAAC  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAATATTTGCCATCTCACACATACACAATTGCAAAATGCCAAAC  100

seq1  TGTTTATCTGACTTTTCTTTCCTGCAAGAAACTACAAGGACAAAGTTTTA  148
      |||||||||||||||||||| |||||||||||||||||||||||||||| 
seq2  TGTTTATCTGACTTTTCTTT-CTGCAAGAAACTACAAGGACAAAGTTTT-  148

seq1  AAACCACTCAGTCATTTTAATGTGACCCCAGAAACATCTTAATATGGTAT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACTCAGTCATTTTAATGTGACCCCAGAAACATCTTAATATGGTAT  198

seq1  TTCAACTGCAGCTATAAACATTTCATACATTTGCAAATAATTTGCAGGTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTGCAGCTATAAACATTTCATACATTTGCAAATAATTTGCAGGTT  248

seq1  GAGTAAGCTATCCTGCCTAGATTGTCCATAAACTGAAGTAGACTTCATTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGCTATCCTGCCTAGATTGTCCATAAACTGAAGTAGACTTCATTA  298

seq1  GCATCCTGCCACCTTTGCTACTAAGCAAAATTAGGGAGCTAATTTTGTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTGCCACCTTTGCTACTAAGCAAAATTAGGGAGCTAATTTTGTCT  348

seq1  TTAAATAACATTCACCAATAACATAACGAAGCTCTAGAAAATATTATACC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAACATTCACCAATAACATAACGAAGCTCTAGAAAATATTATACC  398

seq1  TTTGTTTTGACCTAAAGAAATAATAATGTTTGTAATTATAAATTTTCTGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGACCTAAAGAAATAATAATGTTTGTAATTATAAATTTTCTGA  448

seq1  ACCACAATAATTGCATTCCTCTACAGCATAAAGACATGCATCAATGTTAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAATAATTGCATTCCTCTACAGCATAAAGACATGCATCAATGTTAC  498

seq1  TAGGTGGAGAGAATATTCGAGTGACAAAATTATAAAATATGCAAGAAAAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGGAGAGAATATTCGAGTGACAAAATTATAAAATATGCAAGAAAAC  548

seq1  TGGTGTAATTTTGACCTTAGTGATCTCTAGTAATATAGAAGTTTACATGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTAATTTTGACCTTAGTGATCTCTAGTAATATAGAAGTTTACATGC  598

seq1  TTTTCTATACATGTTATGACAATATTGGGGCAACAATATGATGGCTTATC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTATACATGTTATGACAATATTGGGGCAACAATATGATGGCTTATC  648

seq1  ACTTACTGCTTCCAGTCATTCCTTGTGTTTTAATTCAAAGCACTTTAACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTGCTTCCAGTCATTCCTTGTGTTTTAATTCAAAGCACTTTAACA  698

seq1  GAGATATCTGTTGTGTGTTGCATACTAGGTATGATTGCTGATGGATACAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATATCTGTTGTGTGTTGCATACTAGGTATGATTGCTGATGGATACAA  748

seq1  TAAAAATGGAAGAGATATCTTTCCTCTTTTTCAAATAATAGACATAAAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGGAAGAGATATCTTTCCTCTTTTTCAAATAATAGACATAAAAA  798

seq1  CATATTTCTTTACATGTGGTACACACATATGTAGAGGTGGGTACACATAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTCTTTACATGTGGTACACACATATGTAGAGGTGGGTACACATAA  848

seq1  ACAGCAATCCATGCAAGGAAGACAGAGAACAATTGTAGAAGTCATTTTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAATCCATGCAAGGAAGACAGAGAACAATTGTAGAAGTCATTTTTC  898

seq1  TCCTTCCAAAACGTAGGTCCTGGCAATCAAACTCAGGTTGTATGGTTTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCAAAACGTAGGTCCTGGCAATCAAACTCAGGTTGTATGGTTTCA  948

seq1  CAGCAAACATCTTTATCTGATAAGTGTTAGGGTTTTATTGGTATGAACAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAACATCTTTATCTGATAAGTGTTAGGGTTTTATTGGTATGAACAG  998

seq1  ACATCATAGCCACAGCAACTCTTTTTTTTAAAGAAAAGATTTATTTATTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATAGCCACAGCAACTCTTTTTTTTAAAGAAAAGATTTATTTATTT  1048

seq1  ACTTTATGTATGTGAGTACACTGTAAGTGTACAAATGGTGGTGGTTGGGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATGTATGTGAGTACACTGTAAGTGTACAAATGGTGGTGGTTGGGA  1098

seq1  GTTGAATTC  1107
      |||||||||
seq2  GTTGAATTC  1107


seq1: chr18_17670310_17670846
seq2: B6Ng01-178K01.g_62_598

seq1  GAATTCATTACTTGGAAATCATATTGAAAGTACTTGCGAGACAACCGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTACTTGGAAATCATATTGAAAGTACTTGCGAGACAACCGACC  50

seq1  ACATTCCTGGTGAGAGCACAGGGGTCCGCCTGGCCTGAGAGGCTTCTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCTGGTGAGAGCACAGGGGTCCGCCTGGCCTGAGAGGCTTCTGCC  100

seq1  TCACTTTCCGTGGGGGCCACCTTGGTTTCTGGACTCTGCGGCGGGCGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTCCGTGGGGGCCACCTTGGTTTCTGGACTCTGCGGCGGGCGGTC  150

seq1  TGCGAGTGAGAGTGTGGAACACAGAGGCTTCTGGAACGGGCGAGAGCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAGTGAGAGTGTGGAACACAGAGGCTTCTGGAACGGGCGAGAGCCAC  200

seq1  AGAGCCTCTGAGGCGGCGTCATTTCCGGCTCCAGACAACCGGCCATCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTCTGAGGCGGCGTCATTTCCGGCTCCAGACAACCGGCCATCTTC  250

seq1  CTGGTCAGAGCACAGGTGTCCACCCGGCCCGAGAGGCTTCTGCCTCACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCAGAGCACAGGTGTCCACCCGGCCCGAGAGGCTTCTGCCTCACTT  300

seq1  TCCTCGGGGGCCACCTTGGTTCCGGGACTCCACGGAAAGTAGTCTACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCGGGGGCCACCTTGGTTCCGGGACTCCACGGAAAGTAGTCTACACA  350

seq1  GGTGAGAGTGTGGACTACTGAAACAAAGGCTTCTGTGACAGGCCAAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGAGTGTGGACTACTGAAACAAAGGCTTCTGTGACAGGCCAAAGCA  400

seq1  ACACAGCTTCTAGGAAAGATCCTGTTTTGGGCCTTCATCTTCGGCCAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCTTCTAGGAAAGATCCTGTTTTGGGCCTTCATCTTCGGCCAGGA  450

seq1  GGAGGTCCAAACACCAGATAACTGTGCACCTCCCTGAAAGAGGAGACCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTCCAAACACCAGATAACTGTGCACCTCCCTGAAAGAGGAGACCTT  500

seq1  GCCTGCAGAGACTGCTCTGACCACTGAAACTCAGGGA  537
      |||||||||||||||||||||||||||||||||||||
seq2  GCCTGCAGAGACTGCTCTGACCACTGAAACTCAGGGA  537


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