BAC Information

Click to search

BAC

Clone NameB6Ng01-178K07
Chromosome18 (Build37)
Map Location 49,342,715 - 49,343,834
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042323, LOC545470
Downstream geneDtwd2, Dmxl1, Tnfaip8, Hsd17b4, LOC626721
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178K07.g
ACCGA005573
length1,109
definitionB6Ng01-178K07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttattagaaactccaaaaacaggaagagttagtaacaatgcatt
agaagacaatgagggccaacttagactaataatacccattaaaactattc
accatatttgaaagagaaagaaaaccatatgatataaacagctcaaaaat
gaatatccaacaaggcaattttaaagaaattacaggaagcagtatttcag
gctgaagacaagaatgagcatggccaagagactggaaattaaaaaaaaaa
atggagctctaatcactaaaacacaaataccaccaaggacataagcaaca
gcaccaaaaatcaacagcaaaatgaatccaattcatgcatacatttaaat
gtcgttaaatatctgtgatcttaatttacccataaaaatatacaggccat
gtgaattgatcaagaaacaaaatccagctttgtctacaagatccatatat
gaagttaaagatggatgaacaaaggtactcacacatcaaaagccacagct
aaccctaagtgttgctacttacacaccacagcctaattataaacaatcac
atgcagtattgccagttagttagtgtttgctgaaaagctatggaatgttt
tatgtaggccgtttcacttaggacactgggatattaatgctgaaaggaaa
aaggcaaactgtaagaccaggaattaagcaggcacagttatgctaaaacc
taacaaagtagacttgagtctaaaactaatgttcatatcacggtatcagt
taaccaagaagacattactatacgaaacatgtatgcacaaaattctggtg
cacctaattaaaaagtgcactactgcatttaaagttgtagattaacatcc
aaccattaatagcaggtgagactatctgtctaaaagggaggactcttaaa
tctttgcagcgatataaggaaaacttcatcaataaagcttcactctactt
gagcatctgatacagatttattattcatgaggagattattagcattgcac
tgcttctgtatgatccagtaaaagtaaaaagaaaaaaatgtagatatttg
ttgcagacatgaaatttaaattttttatctttgaactgctttttaaataa
atacctatg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_49342715_49343834
seq2: B6Ng01-178K07.g_64_1172

seq1  GAATTCTTATTAGAAACTCCAAAAACAGGAAGAGTTAGTAACAATGCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTAGAAACTCCAAAAACAGGAAGAGTTAGTAACAATGCATT  50

seq1  AGAAGACAATGAGGGCCAACTTAGACTAATAATACCCATTAAAACTATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACAATGAGGGCCAACTTAGACTAATAATACCCATTAAAACTATTC  100

seq1  ACCATATTTGAAAGAGAAAGAAAACCATATGATATAAACAGCTCAAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATTTGAAAGAGAAAGAAAACCATATGATATAAACAGCTCAAAAAT  150

seq1  GAATATCCAACAAGGCAATTTTAAAGAAATTACAGGAAGCAGTATTTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATCCAACAAGGCAATTTTAAAGAAATTACAGGAAGCAGTATTTCAG  200

seq1  GCTGAAGACAAGAATGAGCATGGCCAAGAGACTGGAAATTAAAAAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGACAAGAATGAGCATGGCCAAGAGACTGGAAATTAAAAAAAAAA  250

seq1  ATGGAGCTCTAATCACTAAAACACAAATACCACCAAGGACATAAGCAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGCTCTAATCACTAAAACACAAATACCACCAAGGACATAAGCAACA  300

seq1  GCACCAAAAATCAACAGCAAAATGAATCCAATTCATGCATACATTTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAAAAATCAACAGCAAAATGAATCCAATTCATGCATACATTTAAAT  350

seq1  GTCGTTAAATATCTGTGATCTTAATTTACCCATAAAAATATACAGGCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTTAAATATCTGTGATCTTAATTTACCCATAAAAATATACAGGCCAT  400

seq1  GTGAATTGATCAAGAAACAAAATCCAGCTTTGTCTACAAGATCCATATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTGATCAAGAAACAAAATCCAGCTTTGTCTACAAGATCCATATAT  450

seq1  GAAGTTAAAGATGGATGAACAAAGGTACTCACACATCAAAAGCCACAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTAAAGATGGATGAACAAAGGTACTCACACATCAAAAGCCACAGCT  500

seq1  AACCCTAAGTGTTGCTACTTACACACCACAGCCTAATTATAAACAATCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTAAGTGTTGCTACTTACACACCACAGCCTAATTATAAACAATCAC  550

seq1  ATGCAGTATTGCCAGTTAGTTAGTGTTTGCTGAAAAGCTATGGAATGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTATTGCCAGTTAGTTAGTGTTTGCTGAAAAGCTATGGAATGTTT  600

seq1  TATGTAGGCCGTTTCACTTAGGACACTGGGATATTAATGCTGAAAGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGGCCGTTTCACTTAGGACACTGGGATATTAATGCTGAAAGGAAA  650

seq1  AAGGCAAACTGTAAGACCAGGAATTAAGCAGGCACAGTTATGCTAAAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAACTGTAAGACCAGGAATTAAGCAGGCACAGTTATGCTAAAACC  700

seq1  TAACAAAGTAGACTTGAGTCTAAAACTAATGTTCATATCACGGTATCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAGTAGACTTGAGTCTAAAACTAATGTTCATATCACGGTATCAGT  750

seq1  TAACCAAGAAGACATTACTATACGAAACATGTATGCACAAAATTCTGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAAGAAGACATTACTATACGAAACATGTATGCACAAAATTCTGGTG  800

seq1  CACCTAATTAAAAAGTGCACTACTGCATTTAAAGTTGTAGATTAACATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAATTAAAAAGTGCACTACTGCATTTAAAGTTGTAGATTAACATCC  850

seq1  AACCATTAATAGCAGGTGAGACTATCTGTCTAAAAGGGAGGACTCTTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTAATAGCAGGTGAGACTATCTGTCTAAAAGGGAGGACTCTTAAA  900

seq1  TCTTTGCAGCGATATAAGGAAAACTTCATCAATAAAGCTTCACTCTACTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCAGCGATATAAGGAAAACTTCATCAATAAAGCTTCACTCTACTT  950

seq1  GAGCATCTGATAACAGATTTATTATTCATGAGGAAGAATTATTAGCATTG  1000
      ||||||||||| ||||||||||||||||||||||   |||||||||||||
seq2  GAGCATCTGAT-ACAGATTTATTATTCATGAGGA--GATTATTAGCATTG  997

seq1  CACTGCTTCTGTATGATTCCAGTAAAAGTTAAAAAGAAAAAAATGTAAGA  1050
      |||||||||||||||| ||||||||||| ||||||||||||||||| |||
seq2  CACTGCTTCTGTATGA-TCCAGTAAAAG-TAAAAAGAAAAAAATGT-AGA  1044

seq1  TATTTGTTGCAGAACATGAAATTTTAAATTTTTTATCCTTTGAAAACTGC  1100
      |||||||||||| |||||||| |||||||||||||| |||||  ||||||
seq2  TATTTGTTGCAG-ACATGAAA-TTTAAATTTTTTAT-CTTTG--AACTGC  1089

seq1  CTTTTAAAATAATACCTATG  1120
       |||||||  ||||||||||
seq2  TTTTTAAATAAATACCTATG  1109


| Home | SequenceCutter | Blast | Download |